View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12255_high_1 (Length: 558)
Name: NF12255_high_1
Description: NF12255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12255_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 16 - 539
Target Start/End: Original strand, 13371836 - 13372359
Alignment:
| Q |
16 |
gctgtgatctgtgattggttaaaccatccttgtgttttgtcaaactaatatttactcttatttgcaggacctcttcattgcaggcacagacacctcagca |
115 |
Q |
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| T |
13371836 |
gctgtgatctgtgattggttaaaccatccttgtgttttgtcaaactaatatttactcttatttgcaggacctcttcattgcaggcacagacacctcagca |
13371935 |
T |
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| Q |
116 |
gaagcaatgcaatgggcaatggctgagctccttaaccaccatgaatcattccacaaggtaagaaaggagatagagtcggtcacacaaaatgttaggctag |
215 |
Q |
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| T |
13371936 |
gaagctatgcaatgggcaatagctgagctccttaaccatccagaatcattccacaaggtaagaaaggagatagagtcagtcacacaaaatgttaggctag |
13372035 |
T |
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| Q |
216 |
tagaagaatcagatataccaaacatgccatatttacaagcagttgtgaaagaaacactgagactttatccgccaggaccagttacaacaagagaatgcaa |
315 |
Q |
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| T |
13372036 |
tagaagaatcagatataccaaacatgccatatttacaagcagttgtgaaagaaacactgagactttatccgccaggaccagttacaacaagagaatgcaa |
13372135 |
T |
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| Q |
316 |
ccaagactgcaaaataaatggatttgatataccagaaaaaacagcagtagcaatcaatttatatgctataatgagagatccagaagtttgggaagatcca |
415 |
Q |
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| T |
13372136 |
ccaagactgcaaaataaatggatttgatataccagaaaaaacagcagtagcaatcaatttatatgctataatgagagatccagaagtttgggaagatcca |
13372235 |
T |
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| Q |
416 |
aatgaatttcatcctgaaaggttcttgaaagaaagagatgattcaagtagtgatcatgattatcagaatgatgctaagagagtggagtttgattttgttc |
515 |
Q |
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| T |
13372236 |
aatgaatttcatcctgaaaggttcttgaaagaaaaagagaatcaaagtagtgattatgactgtcagaatgatgctaaaagagtggcgtttgattttgttc |
13372335 |
T |
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| Q |
516 |
cgttcggagcaggcagaagagggt |
539 |
Q |
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| T |
13372336 |
catttggagcaggaagaagagggt |
13372359 |
T |
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