View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12255_high_6 (Length: 222)
Name: NF12255_high_6
Description: NF12255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12255_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 17658820 - 17658618
Alignment:
| Q |
1 |
ctattggatccggtgtacataattccgatctctaaccttttttgtgtatcgtcaacccagttagtatatcttctgtcattgttccatacatccaacccac |
100 |
Q |
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| T |
17658820 |
ctattggatccggtgtacataattccgatctccaaccttttttgtgtatcgtcagcccagttagtatatcttcagtcattgttccatacatccaacccac |
17658721 |
T |
|
| Q |
101 |
ctaaaattccaataagatcaattcaatttcctgttatag--cnnnnnnnnaaacaaccaaaatttattaaccgctacatctgcacaagacgcatagagca |
198 |
Q |
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|||||||||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
17658720 |
ctaaaattccaacaagatcaatccaatttcctgttatagttttttttttgaaacaaccaaaatttattaaccgctacatctgcacaagacgcacagagca |
17658621 |
T |
|
| Q |
199 |
agc |
201 |
Q |
| |
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||| |
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|
| T |
17658620 |
agc |
17658618 |
T |
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