View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12255_low_10 (Length: 205)
Name: NF12255_low_10
Description: NF12255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12255_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 171; Significance: 5e-92; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 14 - 184
Target Start/End: Original strand, 14752107 - 14752277
Alignment:
| Q |
14 |
acctgtgaagctcttcaaaactgagaccactagtgttgtgattgtatatctgatgaaatgcatgttcaagaatgttccaagtcttgtcaccatattcagg |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14752107 |
acctgtgaagctcttcaaaactgagaccactagtgttgtgattgtatatctgatgaaatgcatgttcaagaatgttccaagtcttgtcaccatattcagg |
14752206 |
T |
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| Q |
114 |
atccatgacatggctcttgaaaccccttatctgaaaaaccatcttcctcttgctactcatcttctccttct |
184 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14752207 |
atccatgacatggctcttgaaaccccttatctgaaaaaccatcttcctcttgctactcatcttctccttct |
14752277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 123
Target Start/End: Original strand, 14760238 - 14760350
Alignment:
| Q |
11 |
agaacctgtgaagctcttcaaaactgagaccactagtgttgtgattgtatatctgatgaaatgcatgttcaagaatgttccaagtcttgtcaccatattc |
110 |
Q |
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| T |
14760238 |
agaacctgtaaagctcttcaaaactgatattcctaacgttgtggttgtataagtcatgaattgcatgctccaggatgttccaagtcttgtcagcataatc |
14760337 |
T |
|
| Q |
111 |
aggatccatgaca |
123 |
Q |
| |
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|| |||||||||| |
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| T |
14760338 |
agcatccatgaca |
14760350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 107
Target Start/End: Original strand, 14768672 - 14768766
Alignment:
| Q |
13 |
aacctgtgaagctcttcaaaactgagaccactagtgttgtgattgtatatctgatgaaatgcatgttcaagaatgttccaagtcttgtcaccata |
107 |
Q |
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||||||| |||||||||||| || || ||||||| |||||||| || |||||||||| |||| ||| || ||| ||||||| || |||||||| |
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| T |
14768672 |
aacctgtaaagctcttcaaagctaagtccactagcattgtgattataaatctgatgaatagcattttccagtatgatccaagttttatcaccata |
14768766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 5e-24; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 11 - 111
Target Start/End: Original strand, 15884344 - 15884444
Alignment:
| Q |
11 |
agaacctgtgaagctcttcaaaactgagaccactagtgttgtgattgtatatctgatgaaatgcatgttcaagaatgttccaagtcttgtcaccatattc |
110 |
Q |
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||||||||| |||||||||||||||| | ||| || ||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||| || |||| |
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| T |
15884344 |
agaacctgtaaagctcttcaaaactgtaatcacaagagttgtgattgtatatctgatgaattgcatcttcaagaatgttccaagtcatgtcagcaaattc |
15884443 |
T |
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| Q |
111 |
a |
111 |
Q |
| |
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| |
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| T |
15884444 |
a |
15884444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 123
Target Start/End: Complemental strand, 17568287 - 17568175
Alignment:
| Q |
11 |
agaacctgtgaagctcttcaaaactgagaccactagtgttgtgattgtatatctgatgaaatgcatgttcaagaatgttccaagtcttgtcaccatattc |
110 |
Q |
| |
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||||||||| ||||||||||||||||| | ||| |||||| ||||||| | ||||| |||||| || || |||||||||||||||||| |||| || |
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| T |
17568287 |
agaacctgtaaagctcttcaaaactgatattcctaacgttgtggttgtataagtcatgaattgcatgctccaggatgttccaagtcttgtcagcataatc |
17568188 |
T |
|
| Q |
111 |
aggatccatgaca |
123 |
Q |
| |
|
|| |||||||||| |
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|
| T |
17568187 |
agcatccatgaca |
17568175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 11 - 62
Target Start/End: Original strand, 17622450 - 17622501
Alignment:
| Q |
11 |
agaacctgtgaagctcttcaaaactgagaccactagtgttgtgattgtatat |
62 |
Q |
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|
||||||||||||||||||||||| ||||| || ||||||||||||||||||| |
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| T |
17622450 |
agaacctgtgaagctcttcaaaattgagatcattagtgttgtgattgtatat |
17622501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 8e-23; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 11 - 112
Target Start/End: Original strand, 15197202 - 15197306
Alignment:
| Q |
11 |
agaacctgtgaagctcttcaaaactgagacca---ctagtgttgtgattgtatatctgatgaaatgcatgttcaagaatgttccaagtcttgtcaccata |
107 |
Q |
| |
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||||||||| ||||||||||||||||||| | |||| |||||||||||||||| || ||| ||||||||| ||||||||||||| |||||||||||| |
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| T |
15197202 |
agaacctgtaaagctcttcaaaactgagaatattcctagcgttgtgattgtatatccgacgaattgcatgttccagaatgttccaagccttgtcaccata |
15197301 |
T |
|
| Q |
108 |
ttcag |
112 |
Q |
| |
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||||| |
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| T |
15197302 |
ttcag |
15197306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 11 - 112
Target Start/End: Original strand, 15217620 - 15217724
Alignment:
| Q |
11 |
agaacctgtgaagctcttcaaaactgagacca---ctagtgttgtgattgtatatctgatgaaatgcatgttcaagaatgttccaagtcttgtcaccata |
107 |
Q |
| |
|
||||||||| ||||||||||||||||||| | |||| |||||||||||||||| || ||| ||||||||| ||||||||||||| |||||||||||| |
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| T |
15217620 |
agaacctgtaaagctcttcaaaactgagaatattcctagcgttgtgattgtatatccgacgaattgcatgttccagaatgttccaagccttgtcaccata |
15217719 |
T |
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| Q |
108 |
ttcag |
112 |
Q |
| |
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||||| |
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| T |
15217720 |
ttcag |
15217724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 119
Target Start/End: Original strand, 24400546 - 24400653
Alignment:
| Q |
12 |
gaacctgtgaagctcttcaaaactgagaccactagtgttgtgattgtatatctgatgaaatgcatgttcaagaatgttccaagtcttgtcaccatattca |
111 |
Q |
| |
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|||||||| ||| ||||||||||| |||||||||| ||| ||||| || |||| ||||| |||| ||||||||| ||||| ||||| || |||||| |
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| T |
24400546 |
gaacctgtaaagttcttcaaaactaagaccactagcgttatgattataaatctcatgaatagcatcttcaagaatcttccatgtcttatctgcatatttc |
24400645 |
T |
|
| Q |
112 |
ggatccat |
119 |
Q |
| |
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|||||||| |
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| T |
24400646 |
ggatccat |
24400653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 95
Target Start/End: Complemental strand, 3449227 - 3449153
Alignment:
| Q |
21 |
aagctcttcaaaactgagaccactagtgttgtgattgtatatctgatgaaatgcatgttcaagaatgttccaagt |
95 |
Q |
| |
|
|||||||||||| ||||| ||||||| || ||||||| |||| ||||| |||||||||||||| |||||||| |
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| T |
3449227 |
aagctcttcaaagctgagtccactagcattacgattgtaaatctcatgaattgcatgttcaagaagcttccaagt |
3449153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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