View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12255_low_2 (Length: 468)
Name: NF12255_low_2
Description: NF12255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12255_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 389; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 20 - 456
Target Start/End: Original strand, 3790624 - 3791060
Alignment:
| Q |
20 |
aaattatgataacaacaaaagcaatgaataataaactagctttatggaattttattacaaaaattctaattgtgaaatctataccaaaacagtaaaaagt |
119 |
Q |
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|||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |
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| T |
3790624 |
aaattaagataacaacaaaagcaatgaatagtaaactagatttatggaattttattataaaaattctaattgtgaaatctataccaaaacaataaaaagt |
3790723 |
T |
|
| Q |
120 |
attaccttcagaatcaataataccatcttcaataagtttaggtatacagacggcacatgccaaagtagtggaagaagctggacaaagtagagaccctttg |
219 |
Q |
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| T |
3790724 |
attaccttcagaatcaataataccatcttcaataagtttaggtatgcagacagcacatgctaaagtagtggaagaagctggacaaagtagagcccctttg |
3790823 |
T |
|
| Q |
220 |
attcccaaattgcggcccacttccaaggcccaacccatactaaatgtaacaataatacaattgatcttgttgtcaacattcaaagcattaacttcttcta |
319 |
Q |
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| T |
3790824 |
attcccaaattgtggcccacttccaaggcccaacccatactaaatgtaacaataatacaattgatcttgttgtcaacattcaaagcattaacttcttcta |
3790923 |
T |
|
| Q |
320 |
taagttttggaagtctaggaggcatggtgcttttaattgataaaagaactttctttatatcacttctatcatcttcaggttccaaaccatctgggagtgt |
419 |
Q |
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| T |
3790924 |
taagttttggaagtctaggaggcatggtgcttttaattgataaaagaactttctttatatcacttctatcatcttcaggttccaaaccatctggaagtgt |
3791023 |
T |
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| Q |
420 |
caccacttgtatcttgtcttgctcggaaacacaggtt |
456 |
Q |
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| T |
3791024 |
caccacttgtatcttgtcttgctcggaaacaccggtt |
3791060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 21 - 456
Target Start/End: Complemental strand, 3798729 - 3798297
Alignment:
| Q |
21 |
aattatgataacaacaaaagcaatgaataataaactagctttatggaattttattacaaaaattctaattgtgaaatctataccaaaacagtaaaaagta |
120 |
Q |
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| T |
3798729 |
aattatcataacaacaaaaggaatgaataataaactagctttatgtaattatattccaaaattttaaattgtaaaatttata---aaataaaataaatta |
3798633 |
T |
|
| Q |
121 |
ttaccttcagaatcaataataccatcttcaataagtttaggtatacagacggcacatgccaaagtagtggaagaagctggacaaagtagagaccctttga |
220 |
Q |
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| T |
3798632 |
ttaccttgagaatcaataatcccatcttcaataagtttatgtacgcaaacaccacaagccaaagtagtggcagaagctggaaaaagtagagctcctttga |
3798533 |
T |
|
| Q |
221 |
ttcccaaattgcggcccacttccaaggcccaacccatactaaatgtaacaataatacaattgatcttgttgtcaacattcaaagcattaacttcttctat |
320 |
Q |
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| T |
3798532 |
tccccaaattgtgtcccacttccaaagcccaacccatattaaatgtaacaacaatacaattgatcttgctctcaacattcaaagcattaacttcttctat |
3798433 |
T |
|
| Q |
321 |
aagttttggaagtctaggaggcatggtgcttttaattgataaaagaactttctttatatcacttctatcatcttcaggttccaaaccatctgggagtgtc |
420 |
Q |
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||| ||||||||| ||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
3798432 |
aagctttggaagtttagaaggcatggtgcttttaatagataaaataactttctttatatcacttctatcatcttcagattccaaaccatctgggagtgtc |
3798333 |
T |
|
| Q |
421 |
accacttgtatcttgtcttgctcggaaacacaggtt |
456 |
Q |
| |
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| T |
3798332 |
atcacttgtatcttgtcttgctcgaaaacaccggtt |
3798297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 213 - 419
Target Start/End: Original strand, 3770707 - 3770913
Alignment:
| Q |
213 |
ccctttgattcccaaattgcggcccacttccaaggcccaacccatactaaatgtaacaataatacaattgatcttgttgtcaacattcaaagcattaact |
312 |
Q |
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| T |
3770707 |
ccctttaattcctaagttgtgtccaacttccaaagcccatcccatattgaaggtaacaataatacaacaaatcttattttcatcatccaaagcattaact |
3770806 |
T |
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| Q |
313 |
tcttctataagttttggaagtctaggaggcatggtgcttttaattgataaaagaactttctttatatcacttctatcatcttcaggttccaaaccatctg |
412 |
Q |
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| T |
3770807 |
tcttctataagcttaggaagcaaaggaggcatgtttcttttgattgagaagagaactttcttttgatcacttctatcatcttcaggttccaaaccatctg |
3770906 |
T |
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| Q |
413 |
ggagtgt |
419 |
Q |
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| T |
3770907 |
ggagtgt |
3770913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 238 - 419
Target Start/End: Original strand, 3783126 - 3783307
Alignment:
| Q |
238 |
acttccaaggcccaacccatactaaatgtaacaataatacaattgatcttgttgtcaacattcaaagcattaacttcttctataagttttggaagtctag |
337 |
Q |
| |
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|||||||| ||||| |||||| | || ||||||||||||||| ||||| || ||| ||| || ||||||||| |||||||| || || || || || |
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| T |
3783126 |
acttccaaagcccatcccatattgaaagtaacaataatacaagaaatcttattctcagcatccatagcattaacatcttctatgagattagggagcaaag |
3783225 |
T |
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| Q |
338 |
gaggcatggtgcttttaattgataaaagaactttctttatatcacttctatcatcttcaggttccaaaccatctgggagtgt |
419 |
Q |
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|||||||| | ||| ||||||| |||| ||||||| || |||||||| | |||||| ||||||||||||||||||||| |
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| T |
3783226 |
gaggcatgtttcttctaattgagaaaataactttcctttggtcacttctgttgtcttcatcttccaaaccatctgggagtgt |
3783307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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