View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12255_low_6 (Length: 246)
Name: NF12255_low_6
Description: NF12255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12255_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 195779 - 196005
Alignment:
| Q |
1 |
ttatatcttaaattgattgaagtatgaatcaatgatgttaaattagttctcataagtgtttgttaaaattcaaacattatttaaaagatagtttctccat |
100 |
Q |
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| T |
195779 |
ttatatcttaaattgattgaagtatgaatcaatgatgttaaattagttctcataagtgcttgttaaaattcaaacattatttaaaagatagtttctccat |
195878 |
T |
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| Q |
101 |
ctaagattataattcacttggcaaaaacaaattgttacaaaatgataagtagttttacaataagtgagctgaatgacataacatgaaattaaaatataga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
195879 |
ctaagattataattcacttggcaaaaacaaattgttacaaaatgataagtagttttacaagaagtgagctgaatgacataacatgaaattaaaatataga |
195978 |
T |
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| Q |
201 |
aaccaaatgtaaaaccttaatggcatg |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
195979 |
aaccaaatgtaaaaccttaatggcatg |
196005 |
T |
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