View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12255_low_7 (Length: 246)
Name: NF12255_low_7
Description: NF12255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12255_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 195429 - 195194
Alignment:
| Q |
1 |
cctagcaaaatcagccgttaactagtttgatcgaagtcaatcgcatgcttttgctcctcatttcgatgcttctcttccttatttcatcgacaaatgattc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
195429 |
cctagcaaaatcagccgttaactagtttgatcgaagtcaatcgcatgcttttgctcctcatttcgatgcttctcttccttatttcatcgacaaatgattc |
195330 |
T |
|
| Q |
101 |
aatattgcggtgtgaagaaccaccatctctaatagcagcttccgctgccgccttcaagctgagcacattttgctttatctcctttgccttggttccaaca |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
195329 |
aatattgcggtgtgaagaaccaccatctctaatagcagcttccgctgccgccttcaagctgagcacattttgctttatctcctttgccttggttccaaca |
195230 |
T |
|
| Q |
201 |
gttgcctccaacaaacacttgttgacctcatctctg |
236 |
Q |
| |
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||||||||||||||||||||||| |||||||||||| |
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|
| T |
195229 |
gttgcctccaacaaacacttgttaacctcatctctg |
195194 |
T |
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