View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12256_low_1 (Length: 1225)
Name: NF12256_low_1
Description: NF12256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12256_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 1164; Significance: 0; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 1164; E-Value: 0
Query Start/End: Original strand, 20 - 1212
Target Start/End: Complemental strand, 17109119 - 17107923
Alignment:
| Q |
20 |
gtttacagtcacagattttcaaattcactaaacattcaagtgactttggcattttgcctttcagacttggacatcgcactatataaagctttcgtaggcg |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17109119 |
gtttacagtcacagattttcaaattcactaaacattcaagtgactttggcattttgcctttcagacttggacatcgcactatataaagctttcgtaggcg |
17109020 |
T |
|
| Q |
120 |
tggaaatacaccctcaacctcaacagcttcagattcccaatctttccatccatccatatccttaaaaattaaagtttccaaggatggaaatggaacagat |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17109019 |
tggaaatacaccctcaacctcaacagcttcagattcccaatctttccatccatccatatccttaaaaattaaagtttccaaggatggaaatggaacagat |
17108920 |
T |
|
| Q |
220 |
ggagaagagcagctcacatccctataaaactccgtcctaatctccactatcccagagagcccagtgatccgaaggtgcttaagtgatgacatagttccaa |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17108919 |
ggagaagagcagctcacatccctataaaactccgtcctaatctccactatcccagagagcccagtgatccgaaggtgcttaagtgatgacatagttccaa |
17108820 |
T |
|
| Q |
320 |
gcgaaggaagcatcatacaatgtttacaattgctcaactctagcgataccagacttatcaatgagttgtctccaaaccaacttggaaaaaatgttccacc |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17108819 |
gcgaaggaagcatcatacaatgtttacaattgctcaactctagcgataccagacttatcaatgagttgtctccaaaccaacttggaaaaaatgttccacc |
17108720 |
T |
|
| Q |
420 |
gtacttttcaattgagagcgttgtcaaatgtatggaaggtttaagtttctcgagcacctccctttcattttttgaactggtactagtagcgttccacctt |
519 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17108719 |
gtacttttcaattgagagcgttgtcaaatgtatggaaggtttaaggttctcgagcacctccctttcattttttgaactggtactagtagcgttccacctt |
17108620 |
T |
|
| Q |
520 |
aaatttagtttcaaaagatgagatttacttttcatatctgccagagctgcatctgatggattagtaatattctgtagctcgaaaatggacagatctccat |
619 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17108619 |
aaatttagtttcaaaagatgagatttacttttcatatctgccagagctgcatctgatggattagtaatattctgtagctcgaaaatggacagatctccat |
17108520 |
T |
|
| Q |
620 |
gtagattgagatctcctaactgtttcacattggactcactgcccttgtccacataaaaggaactaagaacttgaagattttgtagtctatccatttggat |
719 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17108519 |
gtagagtgagatctcctaactgtttcacattggactcactgcccttgtccacataaaaggaactaagaacttgaagattttgtagtctatccatttggat |
17108420 |
T |
|
| Q |
720 |
tggcattcttgtaaccttagttccactaaagtcaagataagacaatttcacca----gtgtaaattcacaggcagctcttccaaatactcacaatccttc |
815 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17108419 |
tggcattcttgtaaccttagttccactaaagtcaagataagacaatttcaccagtttgtgtaaattcacaggcagctcttccaaatactcacaatccttc |
17108320 |
T |
|
| Q |
816 |
accttcaatgtttgcaagtaaaggagggagcataaagaatccggcaaatttcttatcccagtccgggaaaggtcgagatgacggaggtgtataagatttc |
915 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17108319 |
accttcaatgtttgcaagtaaaggagggagcataaagaatccggcaaatttcttatcccagtccgggaaaggtcgagatgacggaggtgtataagatttc |
17108220 |
T |
|
| Q |
916 |
ttactgtatccggcaactccaccatatccatgtatccgcacaatgacaatacacgcaacaacttacacttcaagaacaactttggaagctccaatgacgt |
1015 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
17108219 |
ttactgtatccggcaactccaccatatccatgtatccgcacaatgacaatacacgcaacaacttacatttcaagaacaactttggaagctccaatgacgt |
17108120 |
T |
|
| Q |
1016 |
caagggcgacaaccaacgatgttggtaagaattcatagacagtggtataaatgtccacaacttattatctgtatataaggtctcgaacccttttgaagat |
1115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17108119 |
caagggcgacaaccaacgatgttggtaagaattcatagacagtggtataaatgtccacaacttattatctgtatataaggtctcgaacccttttgaagat |
17108020 |
T |
|
| Q |
1116 |
ccaattttatcacataaaaatgaaaaatgacgagttatccctgatatatttttccctctttcggctcccaatgttaagcaaaaatccccaaacacag |
1212 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17108019 |
ccaattttatcacatacaaatgaaaaatgacgagttatccctgatatatttttccctctttcggctcccaatgttaagcaaaaatccccaaacacag |
17107923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 143; E-Value: 2e-74
Query Start/End: Original strand, 28 - 532
Target Start/End: Complemental strand, 16977779 - 16977278
Alignment:
| Q |
28 |
tcacagattttcaaattcactaaacattcaagtgactttggcattttgcctttcagacttggacatcgcactatataaagctttcgtaggcgtggaaata |
127 |
Q |
| |
|
||||| ||||||| | |||||||||||||||||| || ||| | |||| |||||||| |||||||||||| |||| |||||||| ||| |||||||| | |
|
|
| T |
16977779 |
tcacaaattttcagactcactaaacattcaagtgtctctggtaatttgtctttcagatttggacatcgcattatagaaagcttttttagacgtggaaaaa |
16977680 |
T |
|
| Q |
128 |
caccctcaacctcaacagcttcagattcccaatctttccatccatccatatccttaaaaattaaagtttccaaggatggaaatggaacagatggagaaga |
227 |
Q |
| |
|
|| || | | ||||| ||||| ||||||| | || |||||||| ||||||||||||| |||| |||||||||||||||||||||| |||| || ||| |
|
|
| T |
16977679 |
caacccc---cccaacaacttcaaattcccatttttcccatccattcatatccttaaaagttaaggtttccaaggatggaaatggaatagatacagtaga |
16977583 |
T |
|
| Q |
228 |
gcagctcacatccctataaaactccgtcctaatctccactatcccagagagcccagtgatccgaaggtgcttaagtgatgacatagttccaagcgaagga |
327 |
Q |
| |
|
|| ||| ||||||||||||||||| | | |||| ||||||| |||||||| || || |||||||||||||| |||||||||||| |||||| |||||| |
|
|
| T |
16977582 |
gcttctcccatccctataaaactccataccaatcaccactattccagagagtccggtaatccgaaggtgcttgagtgatgacataactccaagtgaagga |
16977483 |
T |
|
| Q |
328 |
agcatcatacaatgtttacaattgctcaactctagcgataccagacttatcaatgagttgtctccaaaccaacttggaaaaaatgttccaccgtactttt |
427 |
Q |
| |
|
|||| ||||| | || ||||||||| |||| | |||||||||| | || ||| ||||||||||||||| ||| || || || |||| ||||| | |
|
|
| T |
16977482 |
agcaaaatacagttttcacaattgcttaacttcaaggataccagacatgacagtgaattgtctccaaaccaatgtgggaataacgtaccacaatacttct |
16977383 |
T |
|
| Q |
428 |
caattgagagcgttgtcaaatgtatggaaggtttaagtttctcgagcacctccctttcattttttgaactggtactagtagcgttccaccttaaatttag |
527 |
Q |
| |
|
||||||||||| |||||||||| |||||||| || |||| ||||||||||||||| |||| ||||||| | | ||| || ||||| ||||| | ||| |
|
|
| T |
16977382 |
caattgagagctcattcaaatgtatagaaggttttaggttctggagcacctccctttctttttgtgaactgttgcgagttgcattccatcttaattctag |
16977283 |
T |
|
| Q |
528 |
tttca |
532 |
Q |
| |
|
||||| |
|
|
| T |
16977282 |
tttca |
16977278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 139; E-Value: 4e-72
Query Start/End: Original strand, 28 - 532
Target Start/End: Complemental strand, 17047989 - 17047488
Alignment:
| Q |
28 |
tcacagattttcaaattcactaaacattcaagtgactttggcattttgcctttcagacttggacatcgcactatataaagctttcgtaggcgtggaaata |
127 |
Q |
| |
|
||||| ||||||| | |||||||||||||||||| || ||| | |||| |||||||| |||||||||||| |||| |||||||| ||| |||||||| | |
|
|
| T |
17047989 |
tcacaaattttcagactcactaaacattcaagtgtctctggtaatttgtctttcagatttggacatcgcattatagaaagcttttttagacgtggaaaaa |
17047890 |
T |
|
| Q |
128 |
caccctcaacctcaacagcttcagattcccaatctttccatccatccatatccttaaaaattaaagtttccaaggatggaaatggaacagatggagaaga |
227 |
Q |
| |
|
|| || | || |||| ||||| ||||||| | || |||||||| ||||||||||||| |||| |||||||||||||||||||||| |||| || ||| |
|
|
| T |
17047889 |
caacccc---cttaacaacttcaaattcccatttttcccatccattcatatccttaaaagttaaggtttccaaggatggaaatggaatagatacagtaga |
17047793 |
T |
|
| Q |
228 |
gcagctcacatccctataaaactccgtcctaatctccactatcccagagagcccagtgatccgaaggtgcttaagtgatgacatagttccaagcgaagga |
327 |
Q |
| |
|
|| ||| ||||||| ||||||||| | | |||| ||||||| |||||||| || || |||||||||||||| |||||||||||| |||||| |||||| |
|
|
| T |
17047792 |
gcttctcccatccctgtaaaactccataccaatcaccactattccagagagtccggtaatccgaaggtgcttgagtgatgacataactccaagtgaagga |
17047693 |
T |
|
| Q |
328 |
agcatcatacaatgtttacaattgctcaactctagcgataccagacttatcaatgagttgtctccaaaccaacttggaaaaaatgttccaccgtactttt |
427 |
Q |
| |
|
|||| ||||| | || ||||||||| |||| | |||||||||| | || ||| ||||||||||||||| ||| || || || |||| ||||| | |
|
|
| T |
17047692 |
agcaaaatacagttttcacaattgcttaacttcaaggataccagacgtgacagtgaattgtctccaaaccaatgtgggaataacgtaccacaatacttct |
17047593 |
T |
|
| Q |
428 |
caattgagagcgttgtcaaatgtatggaaggtttaagtttctcgagcacctccctttcattttttgaactggtactagtagcgttccaccttaaatttag |
527 |
Q |
| |
|
||||||||||| |||||||||| |||||||| || |||| ||||||||||||||| |||| ||||||| | | ||| || ||||| ||||| | ||| |
|
|
| T |
17047592 |
caattgagagctcattcaaatgtatagaaggttttaggttctggagcacctccctttctttttgtgaactgttgcgagttgcattccatcttaattctag |
17047493 |
T |
|
| Q |
528 |
tttca |
532 |
Q |
| |
|
||||| |
|
|
| T |
17047492 |
tttca |
17047488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 137; E-Value: 6e-71
Query Start/End: Original strand, 28 - 532
Target Start/End: Complemental strand, 17029651 - 17029150
Alignment:
| Q |
28 |
tcacagattttcaaattcactaaacattcaagtgactttggcattttgcctttcagacttggacatcgcactatataaagctttcgtaggcgtggaaata |
127 |
Q |
| |
|
||||| ||||||| | |||||||||||||||||| || ||| | |||| |||||||| |||||||||||| |||| |||||||| ||| |||||||| | |
|
|
| T |
17029651 |
tcacaaattttcagactcactaaacattcaagtgtctctggtaatttgtctttcagatttggacatcgcattatagaaagcttttttagacgtggaaaaa |
17029552 |
T |
|
| Q |
128 |
caccctcaacctcaacagcttcagattcccaatctttccatccatccatatccttaaaaattaaagtttccaaggatggaaatggaacagatggagaaga |
227 |
Q |
| |
|
|| || | | |||| ||||| ||||||| | || |||||||| ||||||||||||| |||| |||||||||||||||||||||| |||| || ||| |
|
|
| T |
17029551 |
caacccc---ccnaacaacttcaaattcccatttttcccatccattcatatccttaaaagttaaggtttccaaggatggaaatggaatagatacagtaga |
17029455 |
T |
|
| Q |
228 |
gcagctcacatccctataaaactccgtcctaatctccactatcccagagagcccagtgatccgaaggtgcttaagtgatgacatagttccaagcgaagga |
327 |
Q |
| |
|
|| ||| ||||||||||||||||| | | |||| ||||||| |||||||| | || |||||||||||||| |||||||||||| |||||| |||||| |
|
|
| T |
17029454 |
gcttctcccatccctataaaactccataccaatcaccactattccagagagtcnggtaatccgaaggtgcttgagtgatgacataactccaagtgaagga |
17029355 |
T |
|
| Q |
328 |
agcatcatacaatgtttacaattgctcaactctagcgataccagacttatcaatgagttgtctccaaaccaacttggaaaaaatgttccaccgtactttt |
427 |
Q |
| |
|
|||| ||||| | || ||||||||| |||| | |||||||||| | || ||| ||||||||||||||| ||| || || || |||| ||||| | |
|
|
| T |
17029354 |
agcaaaatacagttttcacaattgcttaacttcaaggataccagacatgacagtgaattgtctccaaaccaatgtgggaataacgtaccacaatacttct |
17029255 |
T |
|
| Q |
428 |
caattgagagcgttgtcaaatgtatggaaggtttaagtttctcgagcacctccctttcattttttgaactggtactagtagcgttccaccttaaatttag |
527 |
Q |
| |
|
||||||||||| |||||||||| |||||||| || |||| ||||||||||||||| |||| ||||||| | | ||| || ||||| ||||| | ||| |
|
|
| T |
17029254 |
caattgagagctcattcaaatgtatagaaggttttaggttctggagcacctccctttctttttgtgaactgttgcgagttgcattccatcttaattctag |
17029155 |
T |
|
| Q |
528 |
tttca |
532 |
Q |
| |
|
||||| |
|
|
| T |
17029154 |
tttca |
17029150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1112 - 1153
Target Start/End: Complemental strand, 17028560 - 17028519
Alignment:
| Q |
1112 |
agatccaattttatcacataaaaatgaaaaatgacgagttat |
1153 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||||||||||| |
|
|
| T |
17028560 |
agatcctatttcatcacataaaaatgaaaaatgacgagttat |
17028519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1112 - 1153
Target Start/End: Complemental strand, 17046898 - 17046857
Alignment:
| Q |
1112 |
agatccaattttatcacataaaaatgaaaaatgacgagttat |
1153 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||||||||||| |
|
|
| T |
17046898 |
agatcctatttcatcacataaaaatgaaaaatgacgagttat |
17046857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1112 - 1153
Target Start/End: Complemental strand, 17094391 - 17094350
Alignment:
| Q |
1112 |
agatccaattttatcacataaaaatgaaaaatgacgagttat |
1153 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||||||||||| |
|
|
| T |
17094391 |
agatcctatttcatcacataaaaatgaaaaatgacgagttat |
17094350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 719 - 946
Target Start/End: Complemental strand, 17047301 - 17047070
Alignment:
| Q |
719 |
ttggcattcttgtaaccttagttccactaaagtcaagataagacaatttcaccagtgt----aaattcacaggcagctcttccaaatactcacaatcctt |
814 |
Q |
| |
|
|||||||| ||| ||||| ||||||||||| || |||||| |||| ||||| ||| | ||||||| |||||||||||| | | | | ||| ||| | |
|
|
| T |
17047301 |
ttggcattactgttacctttgttccactaaaatcgagataacacaagttcacgagtttgtgcaaattcataggcagctcttcaagaaattgacagtccct |
17047202 |
T |
|
| Q |
815 |
caccttcaatgtttgcaagtaaaggagggagcataaagaatccggcaaatttcttatcccagtccgggaaaggtcgagatgacggaggtgtataagattt |
914 |
Q |
| |
|
||||||||||||||||||||| | || ||||| || | |||||| | || ||||| ||| || ||||||||||| ||| |||| ||| ||||||| |
|
|
| T |
17047201 |
gaccttcaatgtttgcaagtaatgaagtgagcacaatgtatccggaagtttacttattttagtacgagaaaggtcgaggtgatggagatgtttaagattg |
17047102 |
T |
|
| Q |
915 |
cttactgtatccggcaactccaccatatccat |
946 |
Q |
| |
|
| || ||||||| ||||| | ||||||||| |
|
|
| T |
17047101 |
cctatgttatccggtaactcaatcatatccat |
17047070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 719 - 946
Target Start/End: Complemental strand, 17094794 - 17094563
Alignment:
| Q |
719 |
ttggcattcttgtaaccttagttccactaaagtcaagataagacaatttcaccagtgt----aaattcacaggcagctcttccaaatactcacaatcctt |
814 |
Q |
| |
|
|||||||| ||| ||||| ||||||||||| || |||||| |||| ||||| ||| | ||||||| |||||||||||| | | | | ||| ||| | |
|
|
| T |
17094794 |
ttggcattactgttacctttgttccactaaaatcgagataacacaagttcacgagtttgtgcaaattcataggcagctcttcaagaaattgacagtccct |
17094695 |
T |
|
| Q |
815 |
caccttcaatgtttgcaagtaaaggagggagcataaagaatccggcaaatttcttatcccagtccgggaaaggtcgagatgacggaggtgtataagattt |
914 |
Q |
| |
|
||||||||||||||||||||| | || ||||| || | |||||| | || ||||| ||| || ||||||||||| ||| |||| ||| ||||||| |
|
|
| T |
17094694 |
gaccttcaatgtttgcaagtaatgaagtgagcacaatgtatccggaagtttacttattttagtacgagaaaggtcgaggtgatggagatgtttaagattg |
17094595 |
T |
|
| Q |
915 |
cttactgtatccggcaactccaccatatccat |
946 |
Q |
| |
|
| || ||||||| ||||| | ||||||||| |
|
|
| T |
17094594 |
cctatgttatccggtaactcaatcatatccat |
17094563 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1124 - 1153
Target Start/End: Complemental strand, 16976676 - 16976647
Alignment:
| Q |
1124 |
atcacataaaaatgaaaaatgacgagttat |
1153 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
16976676 |
atcacataaaaatgaaaaatgacgagttat |
16976647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 217
Target Start/End: Complemental strand, 14298044 - 14297979
Alignment:
| Q |
152 |
attcccaatctttccatccatccatatccttaaaaattaaagtttccaaggatggaaatggaacag |
217 |
Q |
| |
|
||||||| |||| |||| ||| |||||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
14298044 |
attcccattcttcccattcatacatatcctcaaattgtaaagtttccaaggatggaaatggaacag |
14297979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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