View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12256_low_3 (Length: 409)
Name: NF12256_low_3
Description: NF12256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12256_low_3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 18 - 401
Target Start/End: Original strand, 396247 - 396636
Alignment:
| Q |
18 |
ataaacacatgacacctgagatttgtatctagtagtcgatataatttcttata------atggattttacaagtgttgacttgatttatgtttgagttga |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
396247 |
ataaacacatgacacctgagatttgtatctagtagtcgatataatttcttatatatataatggattttacaagtgttgacttgatttatgtttgagttga |
396346 |
T |
|
| Q |
112 |
aaaatatgcttttcatacttttcttctgaaaataaccagtatatgtttgttctcatcaatactttctgtacttgatcaacagctacggagaaacagatat |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
396347 |
aaaatatgcttttcatacttttcttctgaaaataaccagtatatgtttgttctcatcaatactttctgtacttgatcaacagctacggagaaacagatat |
396446 |
T |
|
| Q |
212 |
cagttaatttggcctctctaatagctttcttgatatgaaaccagactaatgaaagcatatagcttatagaaatagcttatacttgtataataaacactta |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
396447 |
cagttaatttggcctctctaatagctttcttgatatgaaaccagactaatgaaagcatatagcttatagaaatagcttatacttgtataataaacactta |
396546 |
T |
|
| Q |
312 |
tgttataagcacttaagtaagatgtttatcctaacagtgtccaagtgtattaacatttctctaatttccatttttgggttttcacaggtt |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
396547 |
tgttataagcacttaagtaagatgtttatcctaacagtgtccaaatgtattaacatttctctaatttccatttttgggtttttacaggtt |
396636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 352
Target Start/End: Original strand, 27481428 - 27481488
Alignment:
| Q |
292 |
acttgtataataaacacttatgttataagcacttaagtaagatgtttatcctaacagtgtc |
352 |
Q |
| |
|
|||| ||||||||||| ||||| ||||||||| ||| |||| ||||||||| ||||||||| |
|
|
| T |
27481428 |
acttatataataaacatttatgctataagcacctaattaagttgtttatccaaacagtgtc |
27481488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 292 - 348
Target Start/End: Original strand, 657818 - 657874
Alignment:
| Q |
292 |
acttgtataataaacacttatgttataagcacttaagtaagatgtttatcctaacag |
348 |
Q |
| |
|
|||| ||| |||| ||||||||| |||||||||||| |||| ||||||||| ||||| |
|
|
| T |
657818 |
acttctatgataatcacttatgtgataagcacttaattaagttgtttatccaaacag |
657874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 292 - 340
Target Start/End: Original strand, 40205206 - 40205254
Alignment:
| Q |
292 |
acttgtataataaacacttatgttataagcacttaagtaagatgtttat |
340 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||| |||| ||||||| |
|
|
| T |
40205206 |
acttatataataaacacttatgttataagcatgtaaataagttgtttat |
40205254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University