View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12256_low_4 (Length: 252)
Name: NF12256_low_4
Description: NF12256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12256_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 39813089 - 39812868
Alignment:
| Q |
18 |
tgagggtctaattgaacagctttaattatcctttgaactatctcaatcaacttcttatcaggatctccattactgtcataggaatcaagtgctataacaa |
117 |
Q |
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| T |
39813089 |
tgagggtctaattgaacagctttaattatcctttgaactatctcaatcaacttcttatcaggatctccattactgtcataggaatcaagtgctataacaa |
39812990 |
T |
|
| Q |
118 |
tcaacctgcgccttcgccttaatagagggtatttgtttgatacattatcaagcaacatgttctcatgatttgaaccagaatcttgcttccttatcttgct |
217 |
Q |
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| T |
39812989 |
tcaacctgcgccttcgccttaatagagggtatttgtttgatacattatcaagcaacatgttctcatgatttgaaccagaatcttgcttccttatcttgct |
39812890 |
T |
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| Q |
218 |
taagacacgtttcacttggtct |
239 |
Q |
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|||||||||||||||||||||| |
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| T |
39812889 |
taagacacgtttcacttggtct |
39812868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 151
Target Start/End: Complemental strand, 15801074 - 15800941
Alignment:
| Q |
18 |
tgagggtctaattgaacagctttaattatcctttgaactatctcaatcaacttcttatcaggatctccattactgtcataggaatcaagtgctataacaa |
117 |
Q |
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|||||||||| ||||||||||||||| || ||||||| ||| | |||| |||||||||||| |||||||| || || |||||| |||||||||| |
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| T |
15801074 |
tgagggtctagttgaacagctttaatgattctttgaattatttggatcatattcttatcaggagctccattatcatcgtacaaatcaaccgctataacaa |
15800975 |
T |
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| Q |
118 |
tcaacctgcgccttcgccttaatagagggtattt |
151 |
Q |
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||||||| |||| || ||| |||||||| ||||| |
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| T |
15800974 |
tcaacctccgccgtctcctcaatagaggatattt |
15800941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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