View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12257_high_2 (Length: 509)
Name: NF12257_high_2
Description: NF12257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12257_high_2 |
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| [»] scaffold0189 (1 HSPs) |
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Alignment Details
Target: scaffold0189 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: scaffold0189
Description:
Target: scaffold0189; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 3 - 493
Target Start/End: Original strand, 19321 - 19811
Alignment:
| Q |
3 |
cataggtggtggggatatttctgctgaaatttgtcctaatgaagatgtagttgatgttgatacatcaatacaatttaagaatatacctgattcttttgtc |
102 |
Q |
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| T |
19321 |
catagggggtggggatatttctgctgaaatttgtcctaatgaagatgtagttgatgttgatacatcaatacaatttaagaatataccagattcttttgtt |
19420 |
T |
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| Q |
103 |
aatcttcccgccaactcatacccacttgtgataacatttcagaagtttctaatgatgcttgatgggactgtggggaattcnnnnnnngaaaggattagtg |
202 |
Q |
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| T |
19421 |
aatctttccgccaacttatatccacttgtgataacattccataagtttctaatgatgcttgatggaactgtggggaattccttttttgaaaggtttagtg |
19520 |
T |
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| Q |
203 |
atctatcttctctaagcgagaaccttggtgtaagatctgttgtcttggagacttttataaggaagaaggaggtgacttatgacaggtttgattcattata |
302 |
Q |
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| T |
19521 |
atcaatcttctttaagtgagaaccttggtgtaagatctgttgctttggagacttttataaggaagaaggaagtgacttatgaaaggtttgattcattata |
19620 |
T |
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| Q |
303 |
ttggccacatttcaattcccattataccaagatgctagattcatcgagagtgttcactgaaatcgtgtctcatataaaagggggtatgcaatctctggat |
402 |
Q |
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| T |
19621 |
ttggccacatttcaattcccattataccaagatgctagattcatcgagagtgttcactgaaatcgtgtctcatataaaagggggtatgcaatctctggat |
19720 |
T |
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| Q |
403 |
cgtggtgaagggaagttaagccgacaggattatgtttccttgtctgaaaatcgatcgtcttctttaagcaaggagaaaagggagatcatat |
493 |
Q |
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| T |
19721 |
cgtggtgaagggaagttaagccgtcaggattatgtttccttgtctgaaaatcgatcgtcttctttaagcaaggagaaaagggagatcatat |
19811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 50 - 298
Target Start/End: Complemental strand, 34604510 - 34604262
Alignment:
| Q |
50 |
tagttgatgttgatacatcaatacaatttaagaatatacctgattcttttgtcaatcttcccgccaactcatacccacttgtgataacatttcagaagtt |
149 |
Q |
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| T |
34604510 |
tagttgatgttgatacatcaatacaatttaggaataaacctgattcttttgtcaatcttgccgccaactcatatccacttgtgataacatttcagaagtt |
34604411 |
T |
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| Q |
150 |
tctaatgatgcttgatgggactgtggggaattcnnnnnnngaaaggattagtgatctatcttctctaagcgagaaccttggtgtaagatctgttgtcttg |
249 |
Q |
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| T |
34604410 |
tctaatgatgcttgatgggactgtggggaattctttttttgaaagatttagtgatctatcttctctacgtgagaaccttggtgtaagatctgttgtcttg |
34604311 |
T |
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| Q |
250 |
gagacttttataaggaagaaggaggtgacttatgacaggtttgattcat |
298 |
Q |
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| T |
34604310 |
gagacttttataaggaagaaggaggtgacttatgacaggtttgattcat |
34604262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 340 - 493
Target Start/End: Complemental strand, 34604268 - 34604115
Alignment:
| Q |
340 |
gattcatcgagagtgttcactgaaatcgtgtctcatataaaagggggtatgcaatctctggatcgtggtgaagggaagttaagccgacaggattatgttt |
439 |
Q |
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|||||||| |||||||||||||||||| ||||||||||||||||| ||||| |||| |||| ||||||||||||||||||||| || |||||| ||| |
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| T |
34604268 |
gattcatctagagtgttcactgaaatcatgtctcatataaaagggagtatgtcatctgtggagtctggtgaagggaagttaagccgtcaagattatcttt |
34604169 |
T |
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| Q |
440 |
ccttgtctgaaaatcgatcgtcttctttaagcaaggagaaaagggagatcatat |
493 |
Q |
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| T |
34604168 |
tcttttatgaaaaccgggcgtcaagtttaagcaagcggaaaagggagatcatat |
34604115 |
T |
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