View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12257_low_1 (Length: 527)
Name: NF12257_low_1
Description: NF12257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12257_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 460; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 21 - 516
Target Start/End: Original strand, 35684173 - 35684668
Alignment:
| Q |
21 |
gccataaggtatcacattatcatttttcaccattctagttctactgcttaattcgattcacttatttcaccttatatactgctttaaccacttttatcat |
120 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
35684173 |
gccataaggtatcacattatcatttttcaccattctagttctactgcttaattcgattcacttatttcaccttatatactgctttaaccacttatatcat |
35684272 |
T |
|
| Q |
121 |
aaatgtttatgctatagacacttaattaagctgattatccaaacagagccttaggggagaaaatgagagctctttctctttcattccatttatcataaga |
220 |
Q |
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|||| ||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
35684273 |
aaatttttatgctatatacacttaattaagctgattatccaaacatatccttaggggagaaaatgagatctctttctctttcattccatttatcataaga |
35684372 |
T |
|
| Q |
221 |
attatatctcttgaaaaggattgttttcatctaaagaattaatcattttacactttttcattcacgtagtaacataatatgattacacacacttcaaatc |
320 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
35684373 |
attatatctcttgaaaaggatcgttttcatctaaagaattaatcattttacactttttccttcacgtagtaacataatatgattacacacacttcaaatc |
35684472 |
T |
|
| Q |
321 |
aggactgatatatttataacttattgtgctgtctgaggtaatttgggaagtttttgaattgaattaaaatgtaactaccaatgatcaggtggtggttgta |
420 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35684473 |
aggactgatatatttataacttattgtgctgtctgaggtaatttgggaagtttttgaattgaattaaaatgtaactaccaatgatcaggtggtggttgta |
35684572 |
T |
|
| Q |
421 |
actcatgcttatggaaaacgctctggggttagatacatgacaggtggtttaaaaatctactatgttccatggagaccattctttaatcagaacaca |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
35684573 |
actcatgcttatggaaaacgctctggggttagatacatgacaggtggtttaaaagtctactatgttccatggagaccattctttaatcagaacaca |
35684668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 119 - 171
Target Start/End: Original strand, 18512562 - 18512614
Alignment:
| Q |
119 |
ataaatgtttatgctatagacacttaattaagctgattatccaaacagagcct |
171 |
Q |
| |
|
|||||||||||||||||| |||||||||||| || |||||||| || ||||| |
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| T |
18512562 |
ataaatgtttatgctataagcacttaattaagttgcttatccaagcaaagcct |
18512614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 126 - 162
Target Start/End: Complemental strand, 52734750 - 52734714
Alignment:
| Q |
126 |
tttatgctatagacacttaattaagctgattatccaa |
162 |
Q |
| |
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||||||||||| |||||||||||||||| |||||||| |
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| T |
52734750 |
tttatgctataaacacttaattaagctgtttatccaa |
52734714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 150; Significance: 5e-79; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 233 - 507
Target Start/End: Original strand, 20685213 - 20685493
Alignment:
| Q |
233 |
gaaaaggattgttttcatctaaagaattaatcattttacactttttcattcacgtagtaacataatatgattacacacacttcaaatcaggactgatata |
332 |
Q |
| |
|
||||| || |||||| ||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||| |
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| T |
20685213 |
gaaaatgactgtttttatctaaagagttaatcatcttgcactttttcattcacgtagtaacataatatgattacacgc--ttcaaatcaggactggtata |
20685310 |
T |
|
| Q |
333 |
ttt-------ataacttattgtgctgtctgaggtaatttgggaagtttttgaattgaa-ttaaaatgtaactaccaatgatcaggtggtggttgtaactc |
424 |
Q |
| |
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||| |||||||||| ||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |
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| T |
20685311 |
tttctaaattataacttattatgctgtctgaggtaatttgcaatgtttttgaattgaaattaaaatgtaactaccaatgatcaggtggtggttgtaaccc |
20685410 |
T |
|
| Q |
425 |
atgcttatggaaaacgctctggggttagatacatgacaggtggtttaaaaatctactatgttccatggagaccattctttaat |
507 |
Q |
| |
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|||||||||||||| |||||||||||||| ||||||| | |||||| ||| | ||| |||||||| ||||||||||||||||| |
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|
| T |
20685411 |
atgcttatggaaaatgctctggggttagacacatgacggatggtttgaaagtgtaccatgttccacggagaccattctttaat |
20685493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 405 - 500
Target Start/End: Complemental strand, 40672585 - 40672490
Alignment:
| Q |
405 |
tcaggtggtggttgtaactcatgcttatggaaaacgctctggggttagatacatgacaggtggtttaaaaatctactatgttccatggagaccatt |
500 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| || |||||||| ||||| ||||| |||||| | ||| | ||||||||||||||||||||||| |
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| T |
40672585 |
tcaggtggtggttgcaactcatgcttatggaaatcgatctggggtcagatatatgactggtggtctgaaagtatactatgttccatggagaccatt |
40672490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 119 - 167
Target Start/End: Original strand, 753347 - 753395
Alignment:
| Q |
119 |
ataaatgtttatgctatagacacttaattaagctgattatccaaacaga |
167 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| || ||||||||||||| |
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|
| T |
753347 |
ataaatgtttatgctataaacacttaattaagttgtttatccaaacaga |
753395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 109 - 165
Target Start/End: Original strand, 30237879 - 30237935
Alignment:
| Q |
109 |
cacttttatcataaatgtttatgctatagacacttaattaagctgattatccaaaca |
165 |
Q |
| |
|
||||| ||| |||| || |||||||||||||||||||||||| || ||||||||||| |
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| T |
30237879 |
cacttatataataagtgcttatgctatagacacttaattaagttgtttatccaaaca |
30237935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 109 - 153
Target Start/End: Complemental strand, 31420895 - 31420851
Alignment:
| Q |
109 |
cacttttatcataaatgtttatgctatagacacttaattaagctg |
153 |
Q |
| |
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||||| ||| ||||||| |||||||||| |||||||||||||||| |
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| T |
31420895 |
cacttatataataaatgattatgctataaacacttaattaagctg |
31420851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 126 - 166
Target Start/End: Original strand, 16945133 - 16945173
Alignment:
| Q |
126 |
tttatgctatagacacttaattaagctgattatccaaacag |
166 |
Q |
| |
|
||||||||||| ||||||||||| |||| |||||||||||| |
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|
| T |
16945133 |
tttatgctataaacacttaattaggctgtttatccaaacag |
16945173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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