View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12257_low_4 (Length: 214)
Name: NF12257_low_4
Description: NF12257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12257_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 8e-91; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 20 - 204
Target Start/End: Complemental strand, 26784755 - 26784571
Alignment:
| Q |
20 |
tacattacagtcaattttgtgttcttgaaaatgaaatgacatagggactgctggtgtgtggcgaatttcggcgttgaatgaagctggtgggtggaaagat |
119 |
Q |
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| T |
26784755 |
tacattacagtcaattttgtgttcttgaaaatgaaatgacatagggactgcgggtgtgtggagaatttcggcgttgaatgaagctggtgggtggaaagat |
26784656 |
T |
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| Q |
120 |
aggaccacagttgaagatatggatctgtcagtacgtgcaagtctcgaaggatggaaattcttatacctctccaatacacaggttc |
204 |
Q |
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| T |
26784655 |
aggaccacagttgaagatatggatctatcagtacgtgcaagtctcgaaggatggaaattcttatacctctccaatatacaggttc |
26784571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 60 - 187
Target Start/End: Complemental strand, 26817748 - 26817621
Alignment:
| Q |
60 |
atagggactgctggtgtgtggcgaatttcggcgttgaatgaagctggtgggtggaaagataggaccacagttgaagatatggatctgtcagtacgtgcaa |
159 |
Q |
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| T |
26817748 |
atagggactgctggtgtgtggagaatttcagcattgaatgaagctggtgggtggaaagataggaccacagttgaagatatggacctggctgtacgtgcta |
26817649 |
T |
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| Q |
160 |
gtctcgaaggatggaaattcttatacct |
187 |
Q |
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| T |
26817648 |
gtctggaaggatggaaattcttatacct |
26817621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 48 - 204
Target Start/End: Complemental strand, 26791053 - 26790897
Alignment:
| Q |
48 |
aaatgaaatgacatagggactgctggtgtgtggcgaatttcggcgttgaatgaagctggtgggtggaaagataggaccacagttgaagatatggatctgt |
147 |
Q |
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| T |
26791053 |
aaatgaaatgacatagggactgctggtgtatggagaatttcggcgttgaatgaagcgggtggatggaaagatagaaccaccgtcgaagacatggatttgg |
26790954 |
T |
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| Q |
148 |
cagtacgtgcaagtctcgaaggatggaaattcttatacctctccaatacacaggttc |
204 |
Q |
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| T |
26790953 |
ctgtacgtgctagtctcaaaggatggaaattcctatatctctccaatttacaggttc |
26790897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 55 - 191
Target Start/End: Complemental strand, 26831424 - 26831288
Alignment:
| Q |
55 |
atgacatagggactgctggtgtgtggcgaatttcggcgttgaatgaagctggtgggtggaaagataggaccacagttgaagatatggatctgtcagtacg |
154 |
Q |
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| T |
26831424 |
atgacacagggactgcgggtgtatggagaatttcggcgttgaatgaagctggtgggtggaaagatagaaccaccgtcgaagacatggatttggctgtacg |
26831325 |
T |
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| Q |
155 |
tgcaagtctcgaaggatggaaattcttatacctctcc |
191 |
Q |
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| T |
26831324 |
tgccagtctcaaaggatggaaattcttatacctctcc |
26831288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 69 - 178
Target Start/End: Original strand, 41546852 - 41546961
Alignment:
| Q |
69 |
gctggtgtgtggcgaatttcggcgttgaatgaagctggtgggtggaaagataggaccacagttgaagatatggatctgtcagtacgtgcaagtctcgaag |
168 |
Q |
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| T |
41546852 |
gctggtgtttggagaatttcagcactaaatgaagctggtggatggaaggaccgcacaacagtggaagatatggacctagcagtaagagccagtctcaaag |
41546951 |
T |
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| Q |
169 |
gatggaaatt |
178 |
Q |
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| T |
41546952 |
gatggaaatt |
41546961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 60 - 142
Target Start/End: Original strand, 41919711 - 41919793
Alignment:
| Q |
60 |
atagggactgctggtgtgtggcgaatttcggcgttgaatgaagctggtgggtggaaagataggaccacagttgaagatatgga |
142 |
Q |
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| T |
41919711 |
atagggactgcgggagtgtggagaatttcggcgctgaacgaggctggtggatggaaggataggaccacagttgaagatatgga |
41919793 |
T |
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