View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12258_high_10 (Length: 240)

Name: NF12258_high_10
Description: NF12258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12258_high_10
NF12258_high_10
[»] scaffold0157 (2 HSPs)
scaffold0157 (148-224)||(36379-36455)
scaffold0157 (15-100)||(36499-36584)
[»] chr4 (5 HSPs)
chr4 (148-224)||(12484022-12484098)
chr4 (15-100)||(12483893-12483978)
chr4 (52-100)||(12465196-12465244)
chr4 (151-224)||(12465300-12465364)
chr4 (175-221)||(6206427-6206473)


Alignment Details
Target: scaffold0157 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 148 - 224
Target Start/End: Complemental strand, 36455 - 36379
Alignment:
Q  148 ggccactcaccaatgaggttaatcgtgcattctttgtactctgagcaggatacaatatgtcttggccaccataatat 224  Q
    |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  36455 ggccactcaccaataaggttaatcgtgcaatctttgtactctgagcaggatacaatatgtcttggccaccataatat 36379  T

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Target: scaffold0157; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 100
Target Start/End: Complemental strand, 36584 - 36499
Alignment:
Q  15 tttgatacaatttgttgggacatacagtnnnnnnnnngtctaagatttaattatgtagttgatacaatttgttaggatgggatata 100  Q
    |||||||||||||||||||| ||||| |         |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  36584 tttgatacaatttgttgggatatacaataaaaaaaaagtctaagatttaattatgtagttgatacaatttgttgggatgggatata 36499  T

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Target: chr4 (Bit Score: 69; Significance: 4e-31; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 148 - 224
Target Start/End: Original strand, 12484022 - 12484098
Alignment:
Q  148 ggccactcaccaatgaggttaatcgtgcattctttgtactctgagcaggatacaatatgtcttggccaccataatat 224  Q
    |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  12484022 ggccactcaccaataaggttaatcgtgcaatctttgtactctgagcaggatacaatatgtcttggccaccataatat 12484098  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 100
Target Start/End: Original strand, 12483893 - 12483978
Alignment:
Q  15 tttgatacaatttgttgggacatacagtnnnnnnnnngtctaagatttaattatgtagttgatacaatttgttaggatgggatata 100  Q
    |||||||||||||||||||| ||||| |         |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  12483893 tttgatacaatttgttgggatatacaataaaaaaaaagtctaagatttaattatgtagttgatacaatttgttgggatgggatata 12483978  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 52 - 100
Target Start/End: Original strand, 12465196 - 12465244
Alignment:
Q  52 gtctaagatttaattatgtagttgatacaatttgttaggatgggatata 100  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  12465196 gtctaagatttaattatgtagctgatacaatttgttgggatgggatata 12465244  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 224
Target Start/End: Original strand, 12465300 - 12465364
Alignment:
Q  151 cactcaccaatgaggttaatcgtgcattctttgtactctgagcaggatacaatatgtcttggccaccataatat 224  Q
    |||||||||||||||||||||||||||         ||||||||||||| | ||||||||||||||||||||||    
T  12465300 cactcaccaatgaggttaatcgtgcat---------tctgagcaggataaagtatgtcttggccaccataatat 12465364  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 221
Target Start/End: Complemental strand, 6206473 - 6206427
Alignment:
Q  175 cattctttgtactctgagcaggatacaatatgtcttggccaccataa 221  Q
    |||||| || ||||||||||||||| | |||||||||||||||||||    
T  6206473 cattctgtgaactctgagcaggataaattatgtcttggccaccataa 6206427  T

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