View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12258_high_2 (Length: 519)
Name: NF12258_high_2
Description: NF12258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12258_high_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 19 - 295
Target Start/End: Original strand, 7965606 - 7965880
Alignment:
| Q |
19 |
attaatggattttcattttgatgctatttattgtttaacttttttgacaggggttattgctggtaggtgtggtttcatagggttttaatccattgcattt |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7965606 |
attaatggattttcattttgatgctatttattgtttaacttttttgacagg--ttattgctggtaggtgtggtttcatagggttttaatccattgcattt |
7965703 |
T |
|
| Q |
119 |
agaaattcnnnnnnncatataaagtaggttcagcttttgaccagaacaactgcagttgtagtgtgtactgatgaacttttgtcaattattttcctagtta |
218 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
7965704 |
agaaattcaaaaaaacatataaagtaggttcagcttttgaccagaacaactgcagttgtagtgtgtactgatgaacttttctcaattattttcctagtta |
7965803 |
T |
|
| Q |
219 |
cttaccattgcttagttttgaagggaaactttgcagttccttattacccttttactacccaacgtttccaatgttaa |
295 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7965804 |
cttaccattgcttagttttgaagggaaactttgcagttccttattacccttttactacccaacgtttccaatgttaa |
7965880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 363 - 492
Target Start/End: Original strand, 7965947 - 7966077
Alignment:
| Q |
363 |
atatgtttagagttaataaccttgaaattaacaaggttagctatggtgagtctagggatgaaggtgactgaaagggagtgcttgctttttt-aaataata |
461 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
7965947 |
atatgtttagagttaataaccttgaaattaacaaggttaactatggtgagtctagggatgaaggtgactgaaagggagtgcttgcttttttaaaataata |
7966046 |
T |
|
| Q |
462 |
aaaattaaagacaatataaacctcatatagt |
492 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |
|
|
| T |
7966047 |
aaaattaaagacaatataaacttcatatagt |
7966077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University