View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12258_high_7 (Length: 264)
Name: NF12258_high_7
Description: NF12258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12258_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 14 - 243
Target Start/End: Complemental strand, 20209074 - 20208845
Alignment:
| Q |
14 |
tgtgaatatgaaaactatgggctctaaaagttgttgtgcaagaactgctcatgatattgttccttcggttagctccaaatggttgaggaagaagaatcca |
113 |
Q |
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| T |
20209074 |
tgtgaatatgaaaactatggggtctaaaagttgttgtgcaagaactgctcatgatattgttccttcggttagctccaaatggttgaggaagaaaaatcca |
20208975 |
T |
|
| Q |
114 |
cgtgttggactgttcctgtgttctttcagagttagagcttgtcaatccactgctaacaacaataataaggatatctacaaacaagtgggtctgttccaaa |
213 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
20208974 |
cgtgttggactgttcttgtgttctttcagagttagagcttgtcaatccactgctaacaacaacaataaggatatctacaaacaagtgggtctgttccaaa |
20208875 |
T |
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| Q |
214 |
atgctgtcnnnnnnngtgtaagagcatgta |
243 |
Q |
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||||||| ||||||||||||||| |
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| T |
20208874 |
ctgctgtctttttttgtgtaagagcatgta |
20208845 |
T |
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