View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12258_low_1 (Length: 679)
Name: NF12258_low_1
Description: NF12258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12258_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 363; Significance: 0; HSPs: 22)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 106 - 669
Target Start/End: Original strand, 30243024 - 30243587
Alignment:
| Q |
106 |
attagtgctgagcaagtacttgaaatgcttcaacctcactcaaatctcaagtgcttgaaaatagattactatgatggattatcgttaccaagttggataa |
205 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||| |||||||| |||||||||||||||| |
|
|
| T |
30243024 |
attagtgctgagcaagtacttgaagtgcttcaacctcactcaaatctcaagtgcttgaaaataagtttctatgagggattatccttaccaagttggataa |
30243123 |
T |
|
| Q |
206 |
gccttcttagtaatttaatttctcttgaacttcggaattgcaacaaaattgtgcggcttccgttacttggtaaactaccatctctnnnnnnnctggaatt |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
30243124 |
ttcttcttagtaatttaatttctcttgaacttcggaattgcaacaaaattgtgcggcttccgttacttggtaaactaccatatctaaaaaaactggaatt |
30243223 |
T |
|
| Q |
306 |
atttcgtatggataatctgaaatacttggatgatgatgaatctgaggatggtatgaaggtcagggttttcccatctctggaggtactcgtattaaaattc |
405 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||| |||| | |
|
|
| T |
30243224 |
attcgaaatggataatctgaaatacttggatgatgatgaatctgaggatggtatggaggtgagggttttcccatctctagaggtactccaattatcttgt |
30243323 |
T |
|
| Q |
406 |
ctagaaaacatagaggggttattgaaagtggaaagaggggagatgtttccttgtctttctaacttggaaatctctgattgccctaaacttggactgtcat |
505 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| | |||||||||||||||||| ||| |
|
|
| T |
30243324 |
ctaccaaacatagaggggttattgaaagtggaaagaggggagatgtttccttgtctttctagtttggatatctggaaatgccctaaacttggactgccat |
30243423 |
T |
|
| Q |
506 |
gtcttccatctcttaaagaactctatgtatgggaatgtaacaatgaggtactgaggtcaatctctaccttccgtggtcttactctgctttacctatttgg |
605 |
Q |
| |
|
||||||||||||||||||| |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| | ||| || |
|
|
| T |
30243424 |
gtcttccatctcttaaagacctctttgtatgggaatgtaacaatgagttactgaggtcaatctctaccttccgtggtcttactcagcttaaactaattca |
30243523 |
T |
|
| Q |
606 |
cggtgaaggaataacatccttcccagaggggatgttcaaaaaccttacttctcttcaatctctg |
669 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30243524 |
cggtttcggaataacatccttcccagaggggatgttcaaaaaccttacttctcttcaatctctg |
30243587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 48 - 665
Target Start/End: Complemental strand, 30399574 - 30398957
Alignment:
| Q |
48 |
ccttcatgaattatgcttgtcatgggaaagcgatgatggatttaccaagcccccaactattagtgctgagcaagtacttgaaatgcttcaacctcactca |
147 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||| |||||||||| ||| ||||||||||||||||| |
|
|
| T |
30399574 |
ccttcatgaattatgcttgtcatgggaaagcaactatggatttaccaatcccccaactattagtgctcagcaagtactcgaagtgcttcaacctcactca |
30399475 |
T |
|
| Q |
148 |
aatctcaagtgcttgaaaatagattactatgatggattatcgttaccaagttggataagccttcttagtaatttaatttctcttgaacttcggaattgca |
247 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |||||||| |||||||||||||||| |||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
30399474 |
aatctcaagtgcttgaaaataaattactatgacggattatcattaccaagttggataattattcttagtaatttagtttctcttgaacttgggaattgca |
30399375 |
T |
|
| Q |
248 |
acaaaattgtgcggcttccgttacttggtaaactaccatctctnnnnnnnctggaattatttcgtatggataatctgaaatacttggatgatgatgaatc |
347 |
Q |
| |
|
| ||| ||||||| |||| |||| ||||||||||||| ||||| |||||||||| | |||||||||||||||||||||||||||||||||||| |
|
|
| T |
30399374 |
agaaagttgtgcgacttcagttaattggtaaactaccgtctctaaaaaaactggaattatctgatatggataatctgaaatacttggatgatgatgaatc |
30399275 |
T |
|
| Q |
348 |
tgaggatggtatgaaggtcagggttttcccatctctggaggtactcgtattaaaattcctagaaaacatagaggggttattgaaagtggaaagaggggag |
447 |
Q |
| |
|
| |||||||| || |||| |||||||||||||||||||||| |||| ||| || |||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30399274 |
tcaggatggtgtggaggtgagggttttcccatctctggaggaactccatttactatgcctaccaaacatagaggggttattgaaagtggaaagaggggag |
30399175 |
T |
|
| Q |
448 |
atgtttccttgtctttctaacttggaaatctctgattgccctaaacttggactgtcatgtcttccatctcttaaagaactctatgtatgggaatgtaaca |
547 |
Q |
| |
|
|||||||||||||||||| | ||| |||| | | |||||||||||||||| || |||||||||||||||||||| |||||||||| || |||||||| |
|
|
| T |
30399174 |
atgtttccttgtctttctgagttgagaatcacagcttgccctaaacttggagtgccatgtcttccatctcttaaatccctctatgtattgggatgtaaca |
30399075 |
T |
|
| Q |
548 |
atgaggtactgaggtcaatctctaccttccgtggtcttactctgctttacctatttggcggtgaaggaataacatccttcccagaggggatgttcaaaaa |
647 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| ||||| |||| | |||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
30399074 |
atgagttactgaggtcaatctctaccttccgtggtcttactgagctttccctagattacggtagaggaataacatccttcccagaggggatgttcaaaaa |
30398975 |
T |
|
| Q |
648 |
ccttacttctcttcaatc |
665 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
30398974 |
ccttacttctcttcaatc |
30398957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 50 - 669
Target Start/End: Complemental strand, 29852806 - 29852187
Alignment:
| Q |
50 |
ttcatgaattatgcttgtcatgggaaagcgatgatggatttaccaagcccccaactattagtgctgagcaagtacttgaaatgcttcaacctcactcaaa |
149 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||| || |||||||||||| ||| |||||||||||||||||| |
|
|
| T |
29852806 |
ttcatgaattatgtttgtcatgggaaagcaatgatggatttactgagcccccaactattcatgatgagcaagtactcgaagagcttcaacctcactcaaa |
29852707 |
T |
|
| Q |
150 |
tctcaagtgcttgaaaatagattactatgatggattatcgttaccaagttggataagccttcttagtaatttaatttctcttgaacttcggaattgcaac |
249 |
Q |
| |
|
||||||||||||| | ||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
29852706 |
tctcaagtgcttggacataaattactatgaaggattatcgttaccaagttggataagccttcttagtagtttaatttctcttgaacttcggaattgcaac |
29852607 |
T |
|
| Q |
250 |
aaaattgtgcggcttccgttacttggtaaactaccatctctnnnnnnnctggaattatttcgtatggataatctgaaatacttggatgatgatgaatctg |
349 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| ||| ||| |||||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
29852606 |
aaaattgtgcggcttccgttactttgtaaactaccatatctaaaaaagttggtattattcaaaatggataatctgaaatacttagatgatgatgaatctg |
29852507 |
T |
|
| Q |
350 |
aggatggtatgaaggtcagggttttcccatctctggaggtactcgtattaaaattcctagaaaacatagaggggttattgaaagtggaaagaggggagat |
449 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||||| |||| ||||| || |||| |||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
29852506 |
aggatggtatggaggtgagggttttcccatctctggagatacttctattacaacgcctacgaaacatagaggggttattgaaagtggaaagagggaagat |
29852407 |
T |
|
| Q |
450 |
gtttccttgtctttctaacttggaaatctctgattgccctaaacttggactgtcatgtcttccatctcttaaagaactctatgtatgggaatgtaacaat |
549 |
Q |
| |
|
||||||||||||||||| ||| ||||||| |||||||| ||||||||||| |||||||||||||||| ||| ||| |||||| || |||||||||| |
|
|
| T |
29852406 |
atttccttgtctttctaatttgaaaatctcatattgccctgaacttggactgccatgtcttccatctctgaaactgctccatgtattgggatgtaacaat |
29852307 |
T |
|
| Q |
550 |
gaggtactgaggtcaatctctaccttccgtggtcttactctgctttacctatttggcggtgaaggaataacatccttcccagaggggatgttcaaaaacc |
649 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||| ||||| ||| || |||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
29852306 |
gagttactgaggtcaatctctaccttccgtggtcttacaaagctttggctacatgacggtttcagaataacatccttcccagaggagatgttcaaaaacc |
29852207 |
T |
|
| Q |
650 |
ttacttctcttcaatctctg |
669 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
29852206 |
ttacttctcttcaatctctg |
29852187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 106 - 669
Target Start/End: Original strand, 30339177 - 30339740
Alignment:
| Q |
106 |
attagtgctgagcaagtacttgaaatgcttcaacctcactcaaatctcaagtgcttgaaaatagattactatgatggattatcgttaccaagttggataa |
205 |
Q |
| |
|
||||||||||||||||| || ||| |||||||||||||||||||||||| | ||||| | || ||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
30339177 |
attagtgctgagcaagtgctcgaagagcttcaacctcactcaaatctcaattccttgacagtaaatttctatgaaggattatcgttaccaagttggataa |
30339276 |
T |
|
| Q |
206 |
gccttcttagtaatttaatttctcttgaacttcggaattgcaacaaaattgtgcggcttccgttacttggtaaactaccatctctnnnnnnnctggaatt |
305 |
Q |
| |
|
|||||||||||||||||||||||||| | ||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||| || | | |
|
|
| T |
30339277 |
gccttcttagtaatttaatttctcttaatctttggaattgcaacaaaattgtgctgcttcagttacttggtaaactaccatctctaaaaaatcttagagt |
30339376 |
T |
|
| Q |
306 |
atttcgtatggataatctgaaatacttggatgatgatgaatctgaggatggtatgaaggtcagggttttcccatctctggaggtactcgtattaaaattc |
405 |
Q |
| |
|
|| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||| || | |
|
|
| T |
30339377 |
atatcgtatgaataatctgaaatacttggatgatgatgaatctgaggatggtatggaggtgagggttttcccatctctggaggtactctacttacaacgc |
30339476 |
T |
|
| Q |
406 |
ctagaaaacatagaggggttattgaaagtggaaagaggggagatgtttccttgtctttctaacttggaaatctctgattgccctaaacttggactgtcat |
505 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||| ||| |
|
|
| T |
30339477 |
ctaccaaacatagaggggttattgaaagtggaaagaggggagatgtttccttgtctttctaacttgacaatctcctattgccctaaaattggactgccat |
30339576 |
T |
|
| Q |
506 |
gtcttccatctcttaaagaactctatgtatgggaatgtaacaatgaggtactgaggtcaatctctaccttccgtggtcttactctgctttacctatttgg |
605 |
Q |
| |
|
||||||||||||||||||| |||||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||| |||| | ||| || |
|
|
| T |
30339577 |
gtcttccatctcttaaagacctctatgttgagggatgtaacaatgagttactgaggtcaatctctaccttccgtggtcttactcagcttatcttatatga |
30339676 |
T |
|
| Q |
606 |
cggtgaaggaataacatccttcccagaggggatgttcaaaaaccttacttctcttcaatctctg |
669 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30339677 |
aggtgaaggaataacatccttcccagaggggatgttcaaaaaccttacttctcttcaatctctg |
30339740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 107 - 669
Target Start/End: Complemental strand, 30749093 - 30748531
Alignment:
| Q |
107 |
ttagtgctgagcaagtacttgaaatgcttcaacctcactcaaatctcaagtgcttgaaaatagattactatgatggattatcgttaccaagttggataag |
206 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||| |||||||||| ||||||||||||||||||||||||| |
|
|
| T |
30749093 |
ttagtgctgagcaagtacttgaagtgcttcaacctcactcaaatctcaaatgcttgacaataaattactatgaaggattatcgttaccaagttggataat |
30748994 |
T |
|
| Q |
207 |
ccttcttagtaatttaatttctcttgaacttcggaattgcaacaaaattgtgcggcttccgttacttggtaaactaccatctctnnnnnnnctggaatta |
306 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
|
|
| T |
30748993 |
tattcttagtaatttaatttctcttgaacttgagatttgcaacaaaattgtgcggcttccgttacttggtaaactaccatctctaaaaaaactaagatta |
30748894 |
T |
|
| Q |
307 |
tttcgtatggataatctgaaatacttggatgatgatgaatctgaggatggtatgaaggtcagggttttcccatctctggaggtactcgtattaaaattcc |
406 |
Q |
| |
|
| | ||||| ||||||||||||||||||||||||||||||||||| |||||||| |||| || |||||||||||||| |||| |||| ||||||| || |
|
|
| T |
30748893 |
tatggtatgaataatctgaaatacttggatgatgatgaatctgagtatggtatggaggtgagcgttttcccatctctagaggaactcaacttaaaatccc |
30748794 |
T |
|
| Q |
407 |
tagaaaacatagaggggttattgaaagtggaaagaggggagatgtttccttgtctttctaacttggaaatctctgattgccctaaacttggactgtcatg |
506 |
Q |
| |
|
|| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||| ||||||||||| |||| |
|
|
| T |
30748793 |
taccaaacatagagggattattgaaagtggaaagaggggagatgtttccttgtctttctaagttggatatctgggattgccctgaacttggactgccatg |
30748694 |
T |
|
| Q |
507 |
tcttccatctcttaaagaactctatgtatgggaatgtaacaatgaggtactgaggtcaatctctaccttccgtggtcttactctgctttacctatttggc |
606 |
Q |
| |
|
|||||||||||||||| ||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||| | | |
|
|
| T |
30748693 |
tcttccatctcttaaatccctccatttatgggaatgtaacaatgagttactgaggtcaatctctaccttccgtggtcttactcagcttaccctaaatagt |
30748594 |
T |
|
| Q |
607 |
ggtgaaggaataacatccttcccagaggggatgttcaaaaaccttacttctcttcaatctctg |
669 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
30748593 |
ggtgaaggaataacatccttaccagaggagatgttcaaaaaccttacttctcttcaatctctg |
30748531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 107 - 669
Target Start/End: Original strand, 30677821 - 30678386
Alignment:
| Q |
107 |
ttagtgctgagcaagtacttgaaatgcttcaacctcactcaaatctcaagtgcttgaaaatagattactatgatggattatcgttaccaagttggataag |
206 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||| |||| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
30677821 |
ttagtgctgagcaagtacttgaagtgcttaaacctcactcaaatctcaaatgcttgacaataaattactatgaaagattatcgttaccaagttggataat |
30677920 |
T |
|
| Q |
207 |
ccttcttagtaatttaatttctcttgaacttcggaattgcaacaaaattgtgcggcttccgttacttggtaaactaccatctctnnnnnnnctggaatta |
306 |
Q |
| |
|
||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||| |||||||||||||||||| ||| |||| |
|
|
| T |
30677921 |
tattcttagtaatttaatttctcttgaacttgaggaatgcaacaaaattgtgcggcttccgttacgtggtaaactaccatctctaaaaagactgagatta |
30678020 |
T |
|
| Q |
307 |
tttcgtatggataatctgaaatacttggatgatgatgaatctgaggatggtatgaaggtcagggttttcccatctctggaggtactcgtattaaaattcc |
406 |
Q |
| |
|
| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||| | | | |
|
|
| T |
30678021 |
tctcgtatgaataatctgaaatacttggatgatgatgaatctgaggatggtatgaaggtgagggttttcccatctctggagaaactcttattagattctc |
30678120 |
T |
|
| Q |
407 |
tagaaaacatagaggggttattgaaagtggaaagaggggagatgtttccttgtctttctaacttggaaatctctgattgccctaaact---tggactgtc |
503 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||| ||||||| | |
|
|
| T |
30678121 |
taccaaacatagaggggttattgaaagtggaaagaggggagatgtttccttgtctttctaggttggatatctggaattgccctaaactgcttggactgcc |
30678220 |
T |
|
| Q |
504 |
atgtcttccatctcttaaagaactctatgtatgggaatgtaacaatgaggtactgaggtcaatctctaccttccgtggtcttactctgctttacctattt |
603 |
Q |
| |
|
||||||||||||||||||||||||| | |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||| | |
|
|
| T |
30678221 |
atgtcttccatctcttaaagaactcgagatatggggatgtaacaatgagttactgaggtcaatctctaccttccgtggtcttactcagctttccctatat |
30678320 |
T |
|
| Q |
604 |
ggcggtgaaggaataacatccttcccagaggggatgttcaaaaaccttacttctcttcaatctctg |
669 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30678321 |
aacggtttcggaataacatccttcccagaggggatgttcaaaaaccttacttctcttcaatctctg |
30678386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 106 - 669
Target Start/End: Complemental strand, 30482855 - 30482292
Alignment:
| Q |
106 |
attagtgctgagcaagtacttgaaatgcttcaacctcactcaaatctcaagtgcttgaaaatagattactatgatggattatcgttaccaagttggataa |
205 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||| ||||| |||| || |||||||||||||||||||||| |
|
|
| T |
30482855 |
attagtgctgagcaagtacttgaagagcttcaacctcactcaaatctcaaatgcttgacaataaattacaatgaagggttatcgttaccaagttggataa |
30482756 |
T |
|
| Q |
206 |
gccttcttagtaatttaatttctcttgaacttcggaattgcaacaaaattgtgcggcttccgttacttggtaaactaccatctctnnnnnnnctggaatt |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
30482755 |
gccttcttagtaatttaatttctcttgaacttcggaattgcaacaaaattgtgcggcttccgttacttggtaaactaccatctctaaaaaaactggaatt |
30482656 |
T |
|
| Q |
306 |
atttcgtatggataatctgaaatacttggatgatgatgaatctgaggatggtatgaaggtcagggttttcccatctctggaggtactcgtattaaaattc |
405 |
Q |
| |
|
|| | ||||||||||||||||||||||||||||||||||||| |||||||| || |||| | |||||||| ||||||| || ||| ||| || | |
|
|
| T |
30482655 |
atcttatatggataatctgaaatacttggatgatgatgaatctcaggatggtgtggaggtgatggttttccgatctctgatggatctccatttacgatac |
30482556 |
T |
|
| Q |
406 |
ctagaaaacatagaggggttattgaaagtggaaagaggggagatgtttccttgtctttctaacttggaaatctctgattgccctaaacttggactgtcat |
505 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||| ||| |
|
|
| T |
30482555 |
ctacgaaacatagaggggttattgaaagtggaaagaggggagatgtttccttgtctttcttacttggaaatctcatattgccataaacttggactgccat |
30482456 |
T |
|
| Q |
506 |
gtcttccatctcttaaagaactctatgtatgggaatgtaacaatgaggtactgaggtcaatctctaccttccgtggtcttactctgctttacctatttgg |
605 |
Q |
| |
|
||||||||||||| ||| |||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||| | | |
|
|
| T |
30482455 |
ctcttccatctcttgaaggcctctatgtggatggatgtaacaatgagttactgaggtcaatctctaccttccgtggtcttactcagcttaccctaatgga |
30482356 |
T |
|
| Q |
606 |
cggtgaaggaataacatccttcccagaggggatgttcaaaaaccttacttctcttcaatctctg |
669 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
30482355 |
gggtgaaggaataacatccttcccagaggggatgttcaaaaaccttacttgtcttcaatatctg |
30482292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 107 - 669
Target Start/End: Complemental strand, 30059807 - 30059245
Alignment:
| Q |
107 |
ttagtgctgagcaagtacttgaaatgcttcaacctcactcaaatctcaagtgcttgaaaatagattactatgatggattatcgttaccaagttggataag |
206 |
Q |
| |
|
|||||| |||||||||||||||| | ||||||||||||||||||||||| |||||||||||| || |||||| |||||||| || ||||||||||||| |
|
|
| T |
30059807 |
ttagtgttgagcaagtacttgaagttcttcaacctcactcaaatctcaactgcttgaaaataagtttctatgagggattatccttgccaagttggataat |
30059708 |
T |
|
| Q |
207 |
ccttcttagtaatttaatttctcttgaacttcggaattgcaacaaaattgtgcggcttccgttacttggtaaactaccatctctnnnnnnnctggaatta |
306 |
Q |
| |
|
|||||||||||||| |||||||| ||||| | ||| || ||| |||||||||||| ||||||||||| |||||||||| | ||||||||| |
|
|
| T |
30059707 |
tattcttagtaatttagtttctcttaaacttaagcgttgtaagaaagttgtgcggcttcagttacttggtatactaccatctttaaaaaacctggaatta |
30059608 |
T |
|
| Q |
307 |
tttcgtatggataatctgaaatacttggatgatgatgaatctgaggatggtatgaaggtcagggttttcccatctctggaggtactcgtattaaaattcc |
406 |
Q |
| |
|
| | ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |||||||||| | |
|
|
| T |
30059607 |
tcttatatggataatctgaaatacttggatgatgatgaatctgaggatggtatggaggtgagggttttcccatctctggaggaactcgtattatatcagt |
30059508 |
T |
|
| Q |
407 |
tagaaaacatagaggggttattgaaagtggaaagaggggagatgtttccttgtctttctaacttggaaatctctgattgccctaaacttggactgtcatg |
506 |
Q |
| |
|
|| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||| ||||||||||||| |||| |
|
|
| T |
30059507 |
taccaaacatagagggtttattgaaagtggaaagaggggagatgtttccttgtctttctaagttggatatctctgaatgccgtaaacttggactgccatg |
30059408 |
T |
|
| Q |
507 |
tcttccatctcttaaagaactctatgtatgggaatgtaacaatgaggtactgaggtcaatctctaccttccgtggtcttactctgctttacctatttggc |
606 |
Q |
| |
|
|||||||||||||||| ||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| | || ||| |
|
|
| T |
30059407 |
tcttccatctcttaaatccctcactgtatcggaatgtaacaatgagttactgaggtcaatctctaccttccgtggtcttactcagcttttcgtaaatggg |
30059308 |
T |
|
| Q |
607 |
ggtgaaggaataacatccttcccagaggggatgttcaaaaaccttacttctcttcaatctctg |
669 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30059307 |
ggtgaaggaataacatccttcccagaggggatgttcaaaaaccttacttctcttcaatctctg |
30059245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 106 - 669
Target Start/End: Complemental strand, 29871637 - 29871074
Alignment:
| Q |
106 |
attagtgctgagcaagtacttgaaatgcttcaacctcactcaaatctcaagtgcttgaaaatagattactatgatggattatcgttaccaagttggataa |
205 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||| |||| |||||||||| ||||||||||||||||||||||||| |
|
|
| T |
29871637 |
attagtgctgagcaagtactcgaagagcttcaacctcactcaaatctcaaatgcttgacaataaattactatgaaggattatcgttaccaagttggataa |
29871538 |
T |
|
| Q |
206 |
gccttcttagtaatttaatttctcttgaacttcggaattgcaacaaaattgtgcggcttccgttacttggtaaactaccatctctnnnnnnnctggaatt |
305 |
Q |
| |
|
||||||||||||||||||||||| ||||| | |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
29871537 |
ttattcttagtaatttaatttctcttaaacttgaggattgcaacaagattgtgcggcttccgttacttggtaaactaccatctctaaaaaaactggaatt |
29871438 |
T |
|
| Q |
306 |
atttcgtatggataatctgaaatacttggatgatgatgaatctgaggatggtatgaaggtcagggttttcccatctctggaggtactcgtattaaaattc |
405 |
Q |
| |
|
|| | ||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||| |||||||||||||||||| |||||||||| | |
|
|
| T |
29871437 |
atcttatatggataatctgaaatacttggatgatgatgaatctcaggatggtatggaggtgaggattttcccatctctggaggaactcgtattatataag |
29871338 |
T |
|
| Q |
406 |
ctagaaaacatagaggggttattgaaagtggaaagaggggagatgtttccttgtctttctaacttggaaatctctgattgccctaaacttggactgtcat |
505 |
Q |
| |
|
|| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||| || | | ||||||||| |||||||| ||| |
|
|
| T |
29871337 |
ttaccaaacatagagggtttattgaaagttgaaagaggggagatgtttccttgtctttctagtttggatatttggaaatgccctaaaattggactgccat |
29871238 |
T |
|
| Q |
506 |
gtcttccatctcttaaagaactctatgtatgggaatgtaacaatgaggtactgaggtcaatctctaccttccgtggtcttactctgctttacctatttgg |
605 |
Q |
| |
|
||||||||||||||||||| ||| || ||||||||||||| |||||||||||||||||||||| |||||||||||| |||| |||| || |
|
|
| T |
29871237 |
gtcttccatctcttaaagacctcgttgccgatccatgtaacaatgagttactgaggtcaatctctaccttttgtggtcttactcagcttgccctaagtga |
29871138 |
T |
|
| Q |
606 |
cggtgaaggaataacatccttcccagaggggatgttcaaaaaccttacttctcttcaatctctg |
669 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
29871137 |
cggtgaaggaataacatccttcccagaggggatgttcaaaaaccttacttctcttctatctctg |
29871074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 113 - 665
Target Start/End: Complemental strand, 30435266 - 30434714
Alignment:
| Q |
113 |
ctgagcaagtacttgaaatgcttcaacctcactcaaatctcaagtgcttgaaaatagattactatgatggattatcgttaccaagttggataagccttct |
212 |
Q |
| |
|
|||||||| |||| ||| ||||||||||||||||||||||||||||||| | ||| ||| |||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
30435266 |
ctgagcaattactcgaagagcttcaacctcactcaaatctcaagtgcttggatataaattgctatgacggattatcgttaccaagttggataattattct |
30435167 |
T |
|
| Q |
213 |
tagtaatttaatttctcttgaacttcggaattgcaacaaaattgtgcggcttccgttacttggtaaactaccatctctnnnnnnnctggaattatttcgt |
312 |
Q |
| |
|
||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||| || | ||| | || |
|
|
| T |
30435166 |
tagtaatttaatttctcttaaacttggggattgcaacaaaattgtgcggcttccgttatttggtaaactaccatctctaaaaaaacttagagtatatggt |
30435067 |
T |
|
| Q |
313 |
atggataatctgaaatacttggatgatgatgaatctgaggatggtatgaaggtcagggttttcccatctctggaggtactcgtattaaaattcctagaaa |
412 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||| |||||||||||| |||| | || || |
|
|
| T |
30435066 |
atgaataatctgaaatacttggatgatgatgaatctgaggatggtatggaggtgagggctttcccatctttggaggtactcgaattacatgggttaccaa |
30434967 |
T |
|
| Q |
413 |
acatagaggggttattgaaagtggaaagaggggagatgtttccttgtctttctaacttggaaatctctgattgccctaaacttggactgtcatgtcttcc |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| | |||||||||||||||||| |||||||||| |
|
|
| T |
30434966 |
acatagaggggttattgaaagtggaaagaggggagatgtttccttgtctttctagtttggatatctggaaatgccctaaacttggactgccatgtcttcc |
30434867 |
T |
|
| Q |
513 |
atctcttaaagaactctatgtatgggaatgtaacaatgaggtactgaggtcaatctctaccttccgtggtcttactctgctttacctatttggcggtgaa |
612 |
Q |
| |
|
|||||||||||| ||| ||| | | ||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||| | | |||||| |
|
|
| T |
30434866 |
atctcttaaagacctcggtgtcgatggacgtaacaatgagttactgaggtcaatctctaccttccgtggtcttactcagcttaccctaaatagtggtgaa |
30434767 |
T |
|
| Q |
613 |
ggaataacatccttcccagaggggatgttcaaaaaccttacttctcttcaatc |
665 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
30434766 |
ggaataacatccttaccagaggagatgttcaaaaaccttacttctcttcaatc |
30434714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 107 - 533
Target Start/End: Original strand, 30714087 - 30714513
Alignment:
| Q |
107 |
ttagtgctgagcaagtacttgaaatgcttcaacctcactcaaatctcaagtgcttgaaaatagattactatgatggattatcgttaccaagttggataag |
206 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||| |||| |||||||||| |||||||| |||||||||||||||| |
|
|
| T |
30714087 |
ttagtgctgagcaagtactcgaagagcttcaacctcactcaaatctcaaatgcttgacaataaattactatgaaggattatcattaccaagttggataat |
30714186 |
T |
|
| Q |
207 |
ccttcttagtaatttaatttctcttgaacttcggaattgcaacaaaattgtgcggcttccgttacttggtaaactaccatctctnnnnnnnctggaatta |
306 |
Q |
| |
|
|||||||||||||| ||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
30714187 |
tattcttagtaatttagtttctcttgtacttctccattgcaagaaaattgtgcggcttccgttacttggtaaactaccatctctaaaaaaactgagatta |
30714286 |
T |
|
| Q |
307 |
tttcgtatggataatctgaaatacttggatgatgatgaatctgaggatggtatgaaggtcagggttttcccatctctggaggtactcgtattaaaattcc |
406 |
Q |
| |
|
| | |||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||| |||||| |||| | | |
|
|
| T |
30714287 |
tatggtatcaataatctgaaatacttggatgatgatgaatctgaggatggtatggaggtgagggttttcccctctctggagatactcgaattatcttgtc |
30714386 |
T |
|
| Q |
407 |
tagaaaacatagaggggttattgaaagtggaaagaggggagatgtttccttgtctttctaacttggaaatctctgattgccctaaacttggactgtcatg |
506 |
Q |
| |
|
|| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||| | ||||||||||||||||||| |||| |
|
|
| T |
30714387 |
tacgaaacatagtggggttattgaaagtggaaagaggggagatgtttccttctctttctaaattggtaatcgattgttgccctaaacttggactgccatg |
30714486 |
T |
|
| Q |
507 |
tcttccatctcttaaagaactctatgt |
533 |
Q |
| |
|
|||||||||||||||||| |||||||| |
|
|
| T |
30714487 |
tcttccatctcttaaagacctctatgt |
30714513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 212 - 585
Target Start/End: Complemental strand, 4381003 - 4380630
Alignment:
| Q |
212 |
ttagtaatttaatttctcttgaacttcggaattgcaacaaaattgtgcggcttccgttacttggtaaactaccatctctnnnnnnnctggaattatttcg |
311 |
Q |
| |
|
|||||||||||||||||||| ||||| | |||||||||| ||||||||||||||| ||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
4381003 |
ttagtaatttaatttctcttaaactttgtgtttgcaacaaagttgtgcggcttccgtcacttggtaaactaacatctctaaaaaaattggaattatttcg |
4380904 |
T |
|
| Q |
312 |
tatggataatctgaaatacttggatgatgatgaatctgaggatggtatgaaggtcagggttttcccatctctggaggtactcgtattaaaattcctagaa |
411 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||| |||| | | ||| | |
|
|
| T |
4380903 |
tacggataatctgaaatacttggatgatgatgaatttgaggatggtatggaggtgagggttttcccatctctggaggtactcgaattatattgtctacca |
4380804 |
T |
|
| Q |
412 |
aacatagaggggttattgaaagtggaaagaggggagatgtttccttgtctttctaacttggaaatctctgattgccctaaacttggactgtcatgtcttc |
511 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||| || |
|
|
| T |
4380803 |
aacataaaggggttattgaaagtggaaagaggggagttgtttccttgtctttctaacttggatatctagaattgccctaaacttggactgccatgtcatc |
4380704 |
T |
|
| Q |
512 |
catctcttaaagaactctatgtatgggaatgtaacaatgaggtactgaggtcaatctctaccttccgtggtctt |
585 |
Q |
| |
|
||||||||||| | ||| ||| || ||||||||||||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
4380703 |
catctcttaaacacctcgttgttgagggatgtaacaatgagttactgaggtcaatctctacctttcgtggtctt |
4380630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 138; E-Value: 9e-72
Query Start/End: Original strand, 80 - 668
Target Start/End: Complemental strand, 30205990 - 30205399
Alignment:
| Q |
80 |
atgatggatttaccaagcccccaactattagtgctgagcaagtacttgaaatgcttcaacctcactcaaatctcaagtgcttgaaaatagattactatga |
179 |
Q |
| |
|
|||| |||||||| ||| |||| ||||||||| ||||||| || ||||| |||||||||||||||||||||||||| | |||| ||| | ||||| | |
|
|
| T |
30205990 |
atgacggatttacgaagacccctactattagttttgagcaactatttgaagtgcttcaacctcactcaaatctcaagaggttgataatttgtcactataa |
30205891 |
T |
|
| Q |
180 |
tggattatcgttaccaagttggataagccttcttagtaatttaatttctcttgaacttcggaattgcaacaaaattgtgcggcttccgttacttggtaaa |
279 |
Q |
| |
|
|||||| ||||||||||||||||| |||| ||||||||| || |||||| |||| ||||||| | ||| |||||||||||||| | |||||||| |
|
|
| T |
30205890 |
cagattattcttaccaagttggataagtattctcagtaatttagttgctcttgtactttggaattgtgagaaatgtgtgcggcttccgtcatttggtaaa |
30205791 |
T |
|
| Q |
280 |
ctaccatctctnnnnnnnctggaattatttcgtatggataatctgaaatacttggatgatgatgaa---tctgaggatggtatgaaggtcagggttttcc |
376 |
Q |
| |
|
|||| |||| | || | || | |||| || || ||||||||||||||||||||||| ||| | |||||||| || ||| |||||| |
|
|
| T |
30205790 |
ctacaatctttgaaaaaactcgctttgcataatatgaatgatttgaaatacttggatgatgatgaagaatctcaagatggtattgtggcgaggattttcc |
30205691 |
T |
|
| Q |
377 |
catctctggaggtactcgtattaaaattcctagaaaacatagaggggttattgaaagtggaaagaggggagatgtttccttgtctttctaacttggaaat |
476 |
Q |
| |
|
||||||||||||||||| ||||| || ||||| |||| |||| ||||||||||||||||||||||| ||||||||||||||||||||| || || |
|
|
| T |
30205690 |
catctctggaggtactcatattagaaatcctaccaaacttagaagggttattgaaagtggaaagaggtgagatgtttccttgtctttctcgtttaaccat |
30205591 |
T |
|
| Q |
477 |
ctctgattgccctaaacttggactgtcatgtcttccatctcttaaagaactctatgtatgggaatgtaacaatgaggtactgaggtcaatctctaccttc |
576 |
Q |
| |
|
||| ||||||||||||||||||| |||||||| |||||||||| | || |||||| || ||||||||||||| | |||||||||||||||| ||| |
|
|
| T |
30205590 |
ctccttttgccctaaacttggactgccatgtcttgtatctcttaaaaacctagatgtattgggatgtaacaatgagttgctgaggtcaatctctagcttt |
30205491 |
T |
|
| Q |
577 |
cgtggtcttactctgcttta-cctatttggcggtgaaggaataacatccttcccagaggggatgttcaaaaaccttacttctcttcaatctct |
668 |
Q |
| |
|
||||||||| | || ||| ||| ||| ||| || |||||||||||||||| || |||||||||||||||||||||| ||||||| |||| |
|
|
| T |
30205490 |
tgtggtctta-acagccttaccctcgctggaggtaaaagaataacatccttcccggacgggatgttcaaaaaccttacttgtcttcaagctct |
30205399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 55 - 344
Target Start/End: Original strand, 17418770 - 17419059
Alignment:
| Q |
55 |
gaattatgcttgtcatgggaaagcgatgatggatttaccaagcccccaactattagtgctgagcaagtacttgaaatgcttcaacctcactcaaatctca |
154 |
Q |
| |
|
|||||||||||||| ||| ||||| | |||| ||| || ||| |||| | | |||||||||||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
17418770 |
gaattatgcttgtcgtggaaaagcaacgatgaattgacaaagacccctattgttagtgctgagcaactacttgaagtgcttcaacctcactcaaatctca |
17418869 |
T |
|
| Q |
155 |
agtgcttgaaaatagattactatgatggattatcgttaccaagttggataagccttcttagtaatttaatttctcttgaacttcggaattgcaacaaaat |
254 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||| |||||||||||||||||| |||||||||||||| || | ||| |||| | ||||| | || |
|
|
| T |
17418870 |
agtgcttgaaaataacttactatgatggaatattgttaccaagttggataagtattcttagtaatttagttaatgttgcacttagtaattgtgagaactg |
17418969 |
T |
|
| Q |
255 |
tgtgcggcttccgttacttggtaaactaccatctctnnnnnnnctggaattatttcgtatggataatctgaaatacttggatgatgatga |
344 |
Q |
| |
|
|||||||||| ||| | |||||||||||| |||||| |||||||||| | ||| | |||||||||||||||||||||||||| |
|
|
| T |
17418970 |
tgtgcggctttcgtcatttggtaaactacaatctctaaaattactggaattatcttacatgaaaaatctgaaatacttggatgatgatga |
17419059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 427 - 660
Target Start/End: Complemental strand, 30203280 - 30203047
Alignment:
| Q |
427 |
ttgaaagtggaaagaggggagatgtttccttgtctttctaacttggaaatctctgattgccctaaacttggactgtcatgtcttccatctcttaaagaac |
526 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| | | ||||| ||| | || |||||||||| ||||||||||||||||| | ||||| | | |
|
|
| T |
30203280 |
ttgaaagtggaaagagaggagatgtttccttgtctttttcaattggatatcgccttttaccctaaacttcaactgtcatgtcttccatatgttaaaaacc |
30203181 |
T |
|
| Q |
527 |
tctatgtatgggaatgtaacaatgaggtactgaggtcaatctctaccttccgtggtcttactctgctttacctatttggcggtgaaggaataacatcctt |
626 |
Q |
| |
|
| |||||| ||||||||||||||| |||||||||| ||||||| |||| |||||||||| ||| |||| | ||||||||||||| ||||| |
|
|
| T |
30203180 |
tttatgtaaatgaatgtaacaatgagttactgaggtcgatctctagcttctatggtcttacttcccttgaccttgagagaagtgaaggaataacctcctt |
30203081 |
T |
|
| Q |
627 |
cccagaggggatgttcaaaaaccttacttctctt |
660 |
Q |
| |
|
|||| |||||||||| | ||||||||||| |||| |
|
|
| T |
30203080 |
cccaaaggggatgtttagaaaccttacttgtctt |
30203047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 100 - 187
Target Start/End: Complemental strand, 30474829 - 30474742
Alignment:
| Q |
100 |
ccaactattagtgctgagcaagtacttgaaatgcttcaacctcactcaaatctcaagtgcttgaaaatagattactatgatggattat |
187 |
Q |
| |
|
||||||| || |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||| ||||||| |
|
|
| T |
30474829 |
ccaactactactgctgagcaagtacttgaaatgcttcaacctcactcaaatctcaagaggttgaaaatactttactatgacggattat |
30474742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 411 - 668
Target Start/End: Original strand, 29709866 - 29710123
Alignment:
| Q |
411 |
aaacatagaggggttattgaaagtggaaagaggggagatgtttccttgtctttctaacttggaaatctctgattgccctaaacttggactgtcatgtctt |
510 |
Q |
| |
|
|||| ||||||||||| |||| |||||||||| |||| |||||||||||| ||||| ||| |||| | | | ||||||||| ||||||||||||| |
|
|
| T |
29709866 |
aaacttagaggggttagtgaatgtggaaagagaggaggtgtttccttgtccttctattttgaaaattgccctcttcactaaacttgaactgtcatgtctt |
29709965 |
T |
|
| Q |
511 |
ccatctcttaaagaactctatgtatgggaatgtaacaatgaggtactgaggtcaatctctaccttccgtggtcttactctgctttacctatttggcggtg |
610 |
Q |
| |
|
|| ||||||| ||| ||| |||| | || ||||||||||||| ||||||| ||||||||||||| |||||||||| ||| ||| ||| ||| |
|
|
| T |
29709966 |
ccgtctcttatagacctcgatgtttcgggatgtaacaatgagttactgagatcaatctctacctcatgtggtcttaccaaacttacccttgatggaggta |
29710065 |
T |
|
| Q |
611 |
aaggaataacatccttcccagaggggatgttcaaaaaccttacttctcttcaatctct |
668 |
Q |
| |
|
| || |||||||||||| |||| ||||||||| ||||||||| | ||||||| |||| |
|
|
| T |
29710066 |
atagagtaacatccttcctagagaggatgttcagaaaccttacctgtcttcaaactct |
29710123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 74 - 148
Target Start/End: Complemental strand, 4381079 - 4381005
Alignment:
| Q |
74 |
aaagcgatgatggatttaccaagcccccaactattagtgctgagcaagtacttgaaatgcttcaacctcactcaa |
148 |
Q |
| |
|
||||| |||||| |||||||||||||||||||||||| ||||||||||| | ||| ||||||||||||||||| |
|
|
| T |
4381079 |
aaagcaatgatgtatttaccaagcccccaactattagatctgagcaagtattcgaagagcttcaacctcactcaa |
4381005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 122 - 185
Target Start/End: Original strand, 30522299 - 30522362
Alignment:
| Q |
122 |
tacttgaaatgcttcaacctcactcaaatctcaagtgcttgaaaatagattactatgatggatt |
185 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |||||||||| || |||||| ||||| |
|
|
| T |
30522299 |
tacttgaagtgcttcaacctcactcaaatctcaagatcttgaaaatacatggctatgacggatt |
30522362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 122 - 185
Target Start/End: Original strand, 30562639 - 30562702
Alignment:
| Q |
122 |
tacttgaaatgcttcaacctcactcaaatctcaagtgcttgaaaatagattactatgatggatt |
185 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |||||||||| || |||||| ||||| |
|
|
| T |
30562639 |
tacttgaagtgcttcaacctcactcaaatctcaagatcttgaaaatacatggctatgacggatt |
30562702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 480 - 569
Target Start/End: Complemental strand, 30474452 - 30474363
Alignment:
| Q |
480 |
tgattgccctaaacttggactgtcatgtcttccatctcttaaagaactctatgtatgggaatgtaacaatgaggtactgaggtcaatctc |
569 |
Q |
| |
|
||||||||||||||||| || |||| |||||||| |||||||| ||| ||||| | ||||||||||||| ||||||| |||||||| |
|
|
| T |
30474452 |
tgattgccctaaacttgtgttgccatgccttccatcccttaaagacctcattgtatttggatgtaacaatgagttactgagatcaatctc |
30474363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 195 - 341
Target Start/End: Original strand, 29709670 - 29709817
Alignment:
| Q |
195 |
aagttggataagccttcttagtaatttaattt-ctcttgaacttcggaattgcaacaaaattgtgcggcttccgttacttggtaaactaccatctctnnn |
293 |
Q |
| |
|
|||||| ||||| |||||||||||||| ||| ||||||||||| ||||||| || |||||| ||||| | | |||||||||||| |||||| |
|
|
| T |
29709670 |
aagttgaataagtattcttagtaatttagtttgctcttgaacttaaagattgcaagaattgtgtgcgccttccttcatttggtaaactactatctctaaa |
29709769 |
T |
|
| Q |
294 |
nnnnctggaattatttcgtatggataatctgaaatacttggatgatga |
341 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
29709770 |
aaaactggaattatacagtatgcgtaatctgaaatacttggatgatga |
29709817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 48 - 666
Target Start/End: Original strand, 20297197 - 20297818
Alignment:
| Q |
48 |
ccttcatgaattatgcttgtcatgggaaagcgatgatggatttaccaagcccccaactattagtgctgagcaagtacttgaaatgcttcaacctcactca |
147 |
Q |
| |
|
||||||||||||||||||||| ||||||||| ||||| |||||||||||| |||||| | ||||||||| ||||||| ||| ||||||||||||| ||| |
|
|
| T |
20297197 |
ccttcatgaattatgcttgtcttgggaaagcaatgataaatttaccaagccaccaactgtaagtgctgagaaagtactcgaagtgcttcaacctcagtca |
20297296 |
T |
|
| Q |
148 |
aatctcaagtgcttgaaaatagattactatgatggattatcgttaccaagttggataagccttcttagtaatttaatttctcttgaacttcggaattgca |
247 |
Q |
| |
|
||||||||||||||| ||||| ||| |||||||||||| | ||||||||||||||||| |||||||||||||| ||||| |||||||| |||||||| |
|
|
| T |
20297297 |
aatctcaagtgcttggaaataaattgctatgatggattgtggttaccaagttggataattattcttagtaatttagtttcttttgaacttgagaattgca |
20297396 |
T |
|
| Q |
248 |
acaaaattgtgcggcttccgttacttggtaaactaccatctctnnnnnnnctggaattatttcgtatggataatctgaaatacttggatgatgatgaatc |
347 |
Q |
| |
|
|| ||||||||| |||||||||| ||||||||||||||||||| ||| | ||| | ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
20297397 |
acgaaattgtgcagcttccgttaattggtaaactaccatctctaaaaaaactgacaatatctggtatgtataatctgaaatacttggatgatgatgaatc |
20297496 |
T |
|
| Q |
348 |
tgaggatggtatgaaggtcagggttttcccatctctggaggtactcgtattaaaattcctagaaaacatagaggggttattgaaagtggaaagaggggag |
447 |
Q |
| |
|
| |||||||| | |||| |||||||||||||||||||||||||||| ||| | ||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20297497 |
tcgggatggtagggaggtgagggttttcccatctctggaggtactcgacttattttgtctacaaaacatagaggggttattgaaagtggaaagaggggag |
20297596 |
T |
|
| Q |
448 |
atgtttccttgtctttctaacttggaaatctctgattgccctaaacttggactgtcatgtcttccatctcttaaagaactctatgtatgggaatgtaaca |
547 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||| | ||||||||||||||| || |||||||||||||||||||| ||| |||| |||||||| |
|
|
| T |
20297597 |
atgtttccttgtctttctaagttgaaaatctccaaatgccctaaacttggaatgccatgtcttccatctcttaaatccctcgatgtcgatccatgtaaca |
20297696 |
T |
|
| Q |
548 |
atgaggtactgaggtcaatctctaccttccgtggtcttactctgctttacctatttggcggtgaag---gaataacatccttcccagaggggatgttcaa |
644 |
Q |
| |
|
||||| ||||||| ||||||||||| |||||||||||||||| ||||| |||| ||| | |||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
20297697 |
atgagttactgagatcaatctctactttccgtggtcttactcagctttccctacttgacagtgaagaaataataacatccttcccagatgggatgttcaa |
20297796 |
T |
|
| Q |
645 |
aaaccttacttctcttcaatct |
666 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
20297797 |
aaaccttacttctcttcaatct |
20297818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 615 - 668
Target Start/End: Original strand, 20303720 - 20303773
Alignment:
| Q |
615 |
aataacatccttcccagaggggatgttcaaaaaccttacttctcttcaatctct |
668 |
Q |
| |
|
|||||||||||||| | |||||||||||| ||||||||||| ||||||| |||| |
|
|
| T |
20303720 |
aataacatccttccaaaaggggatgttcataaaccttacttgtcttcaaactct |
20303773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 131 - 163
Target Start/End: Complemental strand, 52351383 - 52351351
Alignment:
| Q |
131 |
tgcttcaacctcactcaaatctcaagtgcttga |
163 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |
|
|
| T |
52351383 |
tgcttcaacctcactcaaatctcaagtgtttga |
52351351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 56 - 669
Target Start/End: Complemental strand, 26706833 - 26706220
Alignment:
| Q |
56 |
aattatgcttgtcatgggaaagcgatgatggatttaccaagcccccaactattagtgctgagcaagtacttgaaatgcttcaacctcactcaaatctcaa |
155 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||| |||||| |||| || ||||||||||||||||||||||||| |
|
|
| T |
26706833 |
aattatgcttgtcatgggaaaacaatgatggatttaccaagccaccaactattagtgttgagcagctactcaaagtgcttcaacctcactcaaatctcaa |
26706734 |
T |
|
| Q |
156 |
gtgcttgaaaatagattactatgatggattatcgttaccaagttggataagccttcttagtaatttaatttctcttgaacttcggaattgcaacaaaatt |
255 |
Q |
| |
|
||||||| ||||| | ||||| || |||||||| |||||||||||| |||| |||||||||||||| |||||||||||||| || ||||||| ||| || |
|
|
| T |
26706733 |
gtgcttggaaataaagtactacgacggattatcattaccaagttgggtaagtattcttagtaatttagtttctcttgaacttggggattgcaagaaattt |
26706634 |
T |
|
| Q |
256 |
gtgcggcttccgttacttggtaaactaccatctctnnnnnnnctggaattatttcgtatggataatctgaaatacttggatgatgatgaatctgaggatg |
355 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||| | ||||| ||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
26706633 |
gtgcggcttccgttacttggtaaactaccatctctagaaaaactggaattatcttctatggttaatctgaaatacttggatgatgatgaatctcaggatg |
26706534 |
T |
|
| Q |
356 |
gtatgaaggtcagggttttcccatctctggaggtactcgtattaaaattcctagaaaacatagaggggttattgaaagtggaaagaggggagatgtttcc |
455 |
Q |
| |
|
| ||| |||| |||||||||||||||||| |||||||| ||| | || ||||||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
26706533 |
gcatggaggtgagggttttcccatctctgaaggtactccacttatatgagttaccaaacatagaggggttattgaaagtggaaagaggaaaggtgtttcc |
26706434 |
T |
|
| Q |
456 |
ttgtctttctaacttggaaatctctgattgccctaaacttggactgtcatgtcttccatctcttaaagaactctatgtatgggaatgtaacaatgaggta |
555 |
Q |
| |
|
|||||||||| ||| ||| | |||||||||| || |||||| |||||||||||||||||||| ||| |||| | || ||||||||||||| || |
|
|
| T |
26706433 |
ttgtctttctcgtttgacaatatactattgccctaagctaggactgccatgtcttccatctcttaaatccctcaatgtttcgggatgtaacaatgagtta |
26706334 |
T |
|
| Q |
556 |
ctgaggtcaatctctaccttccgtggtcttactctgctttacctatttggcggtgaaggaataacatccttcccagaggggatgttcaaaaaccttactt |
655 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||| |||| ||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26706333 |
ctgaggtcaatccctacctttcgtggtcttactgagcttaccctatataacggcgaaggaataacatccttcccagaggggatgttcaaaaaccttactt |
26706234 |
T |
|
| Q |
656 |
ctcttcaatctctg |
669 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
26706233 |
ctcttcaatctctg |
26706220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 2e-20; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 427 - 630
Target Start/End: Complemental strand, 7098545 - 7098342
Alignment:
| Q |
427 |
ttgaaagtggaaagaggggagatgtttccttgtctttctaacttggaaatctctgattgccctaaacttggactgtcatgtcttccatctcttaaagaac |
526 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||||||||| ||||||||| ||||||||||||||| ||| | |||||||||||| ||| ||| | |
|
|
| T |
7098545 |
ttgaaagtggaaagagatgagacgtttccttgtctttctattttggaaatcgacaattgccctaaacttgaacttccgtgtcttccatctgttagagacc |
7098446 |
T |
|
| Q |
527 |
tctatgtatgggaatgtaacaatgaggtactgaggtcaatctctaccttccgtggtcttactctgctttacctatttggcggtgaaggaataacatcctt |
626 |
Q |
| |
|
|||||||| |||||||| ||| || | |||| ||||||||||| ||| ||||||||| ||| ||| | | | |||||||||||||||||||| |
|
|
| T |
7098445 |
tctatgtagatgaatgtaataataagatgctgaagtcaatctctagcttttatggtcttaccacccttaccctttatagaggtgaaggaataacatcctt |
7098346 |
T |
|
| Q |
627 |
ccca |
630 |
Q |
| |
|
|||| |
|
|
| T |
7098345 |
ccca |
7098342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 105 - 172
Target Start/End: Original strand, 7582382 - 7582449
Alignment:
| Q |
105 |
tattagtgctgagcaagtacttgaaatgcttcaacctcactcaaatctcaagtgcttgaaaatagatt |
172 |
Q |
| |
|
|||||||| || |||||||||||| |||||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
7582382 |
tattagtgacgatcaagtacttgaagtgcttcaacctcacacaaatctcaagagcttgaaaatagatt |
7582449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 411 - 668
Target Start/End: Original strand, 7582685 - 7582942
Alignment:
| Q |
411 |
aaacatagaggggttattgaaagtggaaagaggggagatgtttccttgtctttctaacttggaaatctctgattgccctaaacttggactgtcatgtctt |
510 |
Q |
| |
|
|||| |||||||||| ||||||||||||| | ||||||||||||||||||||||| ||| | ||| ||||||||||||||| ||| | |||||| |
|
|
| T |
7582685 |
aaacttagaggggttgttgaaagtggaaaaaaaggagatgtttccttgtctttctattttgaacatcaacaattgccctaaacttgaacttccgtgtctt |
7582784 |
T |
|
| Q |
511 |
ccatctcttaaagaactctatgtatgggaatgtaacaatgaggtactgaggtcaatctctaccttccgtggtcttactctgctttac-ctatttggcggt |
609 |
Q |
| |
|
|||||| ||||||| || ||| || |||||| |||||| | |||| ||||||||||| ||| | ||||||| | | |||| || ||| || |
|
|
| T |
7582785 |
ccatctgttaaagacctgagagtacggaaatgtactaatgagttgctgaagtcaatctctagcttgtattgtcttac-cacccttacacttgatggaggc |
7582883 |
T |
|
| Q |
610 |
gaaggaataacatccttcccagaggggatgttcaaaaaccttacttctcttcaatctct |
668 |
Q |
| |
|
||||||||||||||||||||| ||| |||||| ||||||||||| ||| |||||||| |
|
|
| T |
7582884 |
gaaggaataacatccttcccaaaggagatgtttggaaaccttacttgtctccaatctct |
7582942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 109 - 234
Target Start/End: Complemental strand, 7098860 - 7098735
Alignment:
| Q |
109 |
agtgctgagcaagtacttgaaatgcttcaacctcactcaaatctcaagtgcttgaaaatagattactatgatggattatcgttaccaagttggataagcc |
208 |
Q |
| |
|
|||| ||| |||||| ||||| ||||||||||||| ||||||||||| ||||||||||| ||| || | ||||||| || ||||||||||| || |
|
|
| T |
7098860 |
agtgatgatcaagtaattgaagtgcttcaacctcatacaaatctcaagagcttgaaaatacattcttaccaaggattatgctttccaagttggatcagaa |
7098761 |
T |
|
| Q |
209 |
ttcttagtaatttaatttctcttgaa |
234 |
Q |
| |
|
||||||||||||| || |||||||| |
|
|
| T |
7098760 |
ctcttagtaatttagttactcttgaa |
7098735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 323 - 387
Target Start/End: Complemental strand, 7098649 - 7098585
Alignment:
| Q |
323 |
tgaaatacttggatgatgatgaatctgaggatggtatgaaggtcagggttttcccatctctggag |
387 |
Q |
| |
|
||||||||||||||||| |||||| | | |||||||| |||| ||| ||||||||||||| ||| |
|
|
| T |
7098649 |
tgaaatacttggatgataatgaatttcacaatggtatggaggtaaggattttcccatctctagag |
7098585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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