View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12258_low_12 (Length: 226)
Name: NF12258_low_12
Description: NF12258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12258_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 44 - 210
Target Start/End: Original strand, 37365794 - 37365957
Alignment:
| Q |
44 |
tatttggagtaataatcgtgtttatattaacattattataagctagattagcattttgagatcatcatccaatcccaatcataatgaacaaatcattaca |
143 |
Q |
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| T |
37365794 |
tatttggagtaataatcgtgtttagattaacatta---taagctagattagcattttgagatcatcatgcaatcccaatcataatgaacaaatcattaca |
37365890 |
T |
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| Q |
144 |
aaagatagaaagcaaaattctccatcttcttcacaacacaaaaacccaaactcatctcccacaaatc |
210 |
Q |
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| T |
37365891 |
aaagatagaaagcaaaattctccatcttcttcacaacacaaaaacccaaactcatctcccacaaatc |
37365957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 37365720 - 37365766
Alignment:
| Q |
1 |
aaagaagtagtttttggctttttgcaacaaagacattgggtgctatt |
47 |
Q |
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| T |
37365720 |
aaagaagtagtttttggctttttgcaacaaagacattgggtgctatt |
37365766 |
T |
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