View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12258_low_3 (Length: 437)
Name: NF12258_low_3
Description: NF12258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12258_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 18 - 425
Target Start/End: Original strand, 30286801 - 30287188
Alignment:
| Q |
18 |
gtaatctgacccgtccaatctgacatcaatggccaagactcattactgcgtggtatttctactgccagaaattcggattcgtattatagatgcattcatg |
117 |
Q |
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| T |
30286801 |
gtaatctgacccgtccaatctgacatcaatggccaagactcattactgcgtggtatttctactgccagaaattcggattcgtattatagatgcattcatg |
30286900 |
T |
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| Q |
118 |
taggtatacaggaaatcaatttccattccaaaaaattagaaaaggttaactactagtagagaataactttcactagttaataattcaataccatcaaatt |
217 |
Q |
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| T |
30286901 |
taggtatacaggaaatcaatttccattccaaaaaattagaaaaggttaactacta--------------------gttaataattcaataccatcaaatt |
30286980 |
T |
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| Q |
218 |
tccccagtttttgtagagacttggcttttaggtagatggcttcaagcaccatactagcagcatgctgagttactgaagaaggtgattcggcacgagaggg |
317 |
Q |
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| T |
30286981 |
tccccagtttttgtagagacttggcttttaggtagatggcttcaagcaccatactagcagcatgctgagttactgaagaaggtgattcggcacgagaggg |
30287080 |
T |
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| Q |
318 |
acctttcttgacgggtggcttttccaaaagagaaggttgcagtcgctgtatagctgctttaagatcaatcccatcaaatacacgaagagcaccttccaca |
417 |
Q |
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| T |
30287081 |
accttttttgacgggtggcttttccaaaaaagaaggttgcagtcgctgtatagctgctttaagatcaatcccatcaaatacacgaagagcaccttccaca |
30287180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 79; Significance: 9e-37; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 202 - 428
Target Start/End: Original strand, 11071303 - 11071529
Alignment:
| Q |
202 |
tcaataccatcaaatttccccagtttttgtagagacttggcttttaggtagatggcttcaagcaccatactagcagcatgctgagttactgaagaaggtg |
301 |
Q |
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| T |
11071303 |
tcaataccagcaaatttccccagtttttgttgggacttggcttttaagtagatagcttcaagcaccaaagtagcagcatgctgagagactgaagaaggtg |
11071402 |
T |
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| Q |
302 |
attcggcacgagagggacctttcttgacgggtggcttttccaaaagagaaggttgcagtcgctgtatagctgctttaagatcaatcccatcaaatacacg |
401 |
Q |
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| T |
11071403 |
attctgtgcgagtacgaccttttttgacaggcgatttttcagaaaacgagggttgcaaccgttggatggcagcatggagatcgatcccatcaaagacacg |
11071502 |
T |
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| Q |
402 |
aagagcaccttccacattacctctctg |
428 |
Q |
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| T |
11071503 |
aagagcaccttctacattacctctctg |
11071529 |
T |
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