View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12258_low_4 (Length: 297)
Name: NF12258_low_4
Description: NF12258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12258_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 87; Significance: 1e-41; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 180 - 277
Target Start/End: Complemental strand, 28636038 - 28635940
Alignment:
| Q |
180 |
tgtaactgaaagtcaaaaaccaattagcca-gaagaatgtttggtacctaaaagagcaaccgtggcttcaacgtcaacaccaatagcttgaaaacgaga |
277 |
Q |
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| T |
28636038 |
tgtaactgaaagtcaaaaaccaattagccaagaagaatgtttggtacctaaaagagcaaccgtggcttcaacgtcaacaccgatagcttgaaaacgaga |
28635940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 196 - 283
Target Start/End: Complemental strand, 28656529 - 28656441
Alignment:
| Q |
196 |
aaaccaattagcca-gaagaatgtttggtacctaaaagagcaaccgtggcttcaacgtcaacaccaatagcttgaaaacgagagagcac |
283 |
Q |
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| T |
28656529 |
aaaccaattagccaagaagaatgtttggtacctaaaagagcaaccgtggcttcaacatcaacaccaatagcttggaaacgagtgagcac |
28656441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 212 - 283
Target Start/End: Complemental strand, 28606095 - 28606024
Alignment:
| Q |
212 |
agaatgtttggtacctaaaagagcaaccgtggcttcaacgtcaacaccaatagcttgaaaacgagagagcac |
283 |
Q |
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| T |
28606095 |
agaatatttggtacctaaaagagcaaccgtggcttcaacgtcaatgccaatggcttgaaaactagaaagcac |
28606024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 42 - 115
Target Start/End: Complemental strand, 28636184 - 28636105
Alignment:
| Q |
42 |
aaatgttacattattaat---cagagttcacttatgttgtattgt---tgtttctgcctacattgggcatccttccattt |
115 |
Q |
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| T |
28636184 |
aaatgttacattattaataatcagtgtccacttatgttgtattgtctttgtttctgcctacattgggcatccttccattt |
28636105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 222 - 283
Target Start/End: Complemental strand, 28663542 - 28663481
Alignment:
| Q |
222 |
gtacctaaaagagcaaccgtggcttcaacgtcaacaccaatagcttgaaaacgagagagcac |
283 |
Q |
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| T |
28663542 |
gtacctaaaagagcaacagttgcttcaacgtctacaccaatggcttgaaaacgagaaagcac |
28663481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 140 - 184
Target Start/End: Complemental strand, 28636107 - 28636063
Alignment:
| Q |
140 |
tttattatgtttatgtttgacttttgaaagtaaatgttaatgtaa |
184 |
Q |
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| T |
28636107 |
tttattatgtttatggttgacttttgaaagtaaatgttaatgtaa |
28636063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 184
Target Start/End: Complemental strand, 28656602 - 28656553
Alignment:
| Q |
135 |
ggtggtttattatgtttatgtttgacttttgaaagtaaatgttaatgtaa |
184 |
Q |
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| T |
28656602 |
ggtggttaattatgtttatgtttgtgttttgacagtaaatgtttatgtaa |
28656553 |
T |
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