View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12258_low_6 (Length: 265)
Name: NF12258_low_6
Description: NF12258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12258_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 10 - 247
Target Start/End: Complemental strand, 38505849 - 38505612
Alignment:
| Q |
10 |
agaacctgtgttattattactgccttaaagatgttacaaagaagcgcaactcgcccacaatattttgtttctttccattttctgaaccagttctgctaaa |
109 |
Q |
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| T |
38505849 |
agaagctgtgttattattactgccttaaagatgttacaaagaagcgcaactcccccacaatattttgtttctttccattttctgaaccagttctgcgaaa |
38505750 |
T |
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| Q |
110 |
tagttatataagcagaagtaaaatttgcataagaaaaaatgcttcatgtaaaccttgatgcacttctataaatcaaatgagataaacacacacatttaat |
209 |
Q |
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| T |
38505749 |
tagttatataagcagaagtaaaatttgcataagaaaaaatgcttcatgtaaaccttgatgcacttcaataaatcaaatgagataaacacacacatttaat |
38505650 |
T |
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| Q |
210 |
gctatatagccaactttcaatcataaatactcacaaca |
247 |
Q |
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| T |
38505649 |
gttatatagccaactttcaatcataaatactcacaaca |
38505612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 194 - 245
Target Start/End: Complemental strand, 38505615 - 38505564
Alignment:
| Q |
194 |
aacacacacatttaatgctatatagccaactttcaatcataaatactcacaa |
245 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
38505615 |
aacacacacattcaatgctatatagccaactttcaatcataaatactcacaa |
38505564 |
T |
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