View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12258_low_8 (Length: 248)
Name: NF12258_low_8
Description: NF12258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12258_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 29 - 229
Target Start/End: Complemental strand, 2329540 - 2329341
Alignment:
| Q |
29 |
gtttgtgttggttgaaaatatacatatttaataagctctacattgtttagaattgaaaagaaagaagaagatcaaagttatatatagagtacatctttta |
128 |
Q |
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| T |
2329540 |
gtttgtgttggttgaaaatctacatatttaataagctctacatcgtttagaattgaaaagaaagaagaagatcaaagttatatatagagtacatctttta |
2329441 |
T |
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| Q |
129 |
tttttaagcaagaggtgaaagtgaggcaaaatatgatttagtaaaaagatgagatccttaggaaatcagaggctaaaggttggttcattttaggttagaa |
228 |
Q |
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| T |
2329440 |
tttttaagcaagaggtgaaagtgaggcaaaatatgatttag-caaaagatgagatccttaggaaatcagaggttaaaggttggttcattttaggttagaa |
2329342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 103
Target Start/End: Complemental strand, 22189595 - 22189520
Alignment:
| Q |
28 |
tgtttgtgttggttgaaaatatacatatttaataagctctacattgtttagaattgaaaagaaagaagaagatcaa |
103 |
Q |
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| T |
22189595 |
tgttggtgttggttgaaaatatacatattgaagaagtcacacattgcttagtattgtaaaggaagaagaagatcaa |
22189520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 219
Target Start/End: Complemental strand, 23794116 - 23794069
Alignment:
| Q |
172 |
aaaagatgagatccttaggaaatcagaggctaaaggttggttcatttt |
219 |
Q |
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| T |
23794116 |
aaaagaggagatccttagaaaatcaaaggctaatggttggttcatttt |
23794069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 91
Target Start/End: Complemental strand, 4034501 - 4034438
Alignment:
| Q |
28 |
tgtttgtgttggttgaaaatatacatatttaataagctctacattgtttagaattgaaaagaaa |
91 |
Q |
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| T |
4034501 |
tgttggtgttgattgaaaatatatatattcaagaagttctatattgtttagaattgtaaagaaa |
4034438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 91
Target Start/End: Original strand, 13952869 - 13952932
Alignment:
| Q |
28 |
tgtttgtgttggttgaaaatatacatatttaataagctctacattgtttagaattgaaaagaaa |
91 |
Q |
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|||| |||||| ||||||||||| ||||| || ||| |||| |||||||||||||| ||||||| |
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| T |
13952869 |
tgttggtgttgattgaaaatatatatattcaagaagttctatattgtttagaattgtaaagaaa |
13952932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 218
Target Start/End: Original strand, 10157493 - 10157539
Alignment:
| Q |
172 |
aaaagatgagatccttaggaaatcagaggctaaaggttggttcattt |
218 |
Q |
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| T |
10157493 |
aaaatatgagatccttaggaaatcaaagactaagggttggttcattt |
10157539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 213
Target Start/End: Complemental strand, 4535750 - 4535717
Alignment:
| Q |
180 |
agatccttaggaaatcagaggctaaaggttggtt |
213 |
Q |
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||||||||||||||||| |||||||||||||||| |
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| T |
4535750 |
agatccttaggaaatcaaaggctaaaggttggtt |
4535717 |
T |
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