View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12259_high_10 (Length: 250)
Name: NF12259_high_10
Description: NF12259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12259_high_10 |
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Alignment Details
Target: chr6 (Bit Score: 156; Significance: 5e-83; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 20 - 223
Target Start/End: Complemental strand, 11155507 - 11155304
Alignment:
| Q |
20 |
agaagctgagaagtacaaagatgaagacaagaggtatatgaagaaggtagaagcgagagttgtactagagacgtatgcatacaacatgaggaatgccata |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
11155507 |
agaagctgagaagtacaaagatgaagacaagaggtatatgaagaaggtagaagcgagagttgtactagagacgtatgcatacaacatgaggaatgctata |
11155408 |
T |
|
| Q |
120 |
aatgataaggatattagcttgaggctttcgtcaaaagaaaaggaaatgatcaataaagaaattgatttggtcttaaggtggttcgatgttaatgtggttg |
219 |
Q |
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||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||| | | ||||||||||||| | |||| |||||||||| ||| ||| |
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| T |
11155407 |
aatgataaggatattagtttgatgctttcgtcaaaagaaaaggaaaagatcaataatgcacttgatttggtctttacgtggctcgatgttaacgtgattg |
11155308 |
T |
|
| Q |
220 |
cgga |
223 |
Q |
| |
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|||| |
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| T |
11155307 |
cgga |
11155304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 20 - 223
Target Start/End: Complemental strand, 11195954 - 11195751
Alignment:
| Q |
20 |
agaagctgagaagtacaaagatgaagacaagaggtatatgaagaaggtagaagcgagagttgtactagagacgtatgcatacaacatgaggaatgccata |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||| |||||||||||||||||||||||| ||| |
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| T |
11195954 |
agaagctgagaagtacaaagatgaagacaagaggtatatgaagaagctagaagcgagagatgtattagagaagtatgcatacaacatgaggaatgcgata |
11195855 |
T |
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| Q |
120 |
aatgataaggatattagcttgaggctttcgtcaaaagaaaaggaaatgatcaataaagaaattgatttggtcttaaggtggttcgatgttaatgtggttg |
219 |
Q |
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||||||||||| ||||| |||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||| | |||| |||||||||| ||||||| |
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| T |
11195854 |
aatgataaggacattagtttgatgctttcgtcaaaagaaaaggaaaagatcaataaagcaattgatttggtcttcatgtggctcgatgttaacgtggttg |
11195755 |
T |
|
| Q |
220 |
cgga |
223 |
Q |
| |
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|||| |
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| T |
11195754 |
cgga |
11195751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 18 - 193
Target Start/End: Complemental strand, 11165561 - 11165386
Alignment:
| Q |
18 |
agagaagctgagaagtacaaagatgaagacaagaggtatatgaagaaggtagaagcgagagttgtactagagacgtatgcatacaacatgaggaatgcca |
117 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||| ||| ||||||||| ||||||||| || |||||||| ||| |||||||| |||||| || ||| |
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| T |
11165561 |
agagaagctgagaaatacaaagatgaagacatgaggcataggaagaaggttgaagcgagaaatgcactagagaggtacgcatacaatatgagggattcca |
11165462 |
T |
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| Q |
118 |
taaatgataaggatattagcttgaggctttcgtcaaaagaaaaggaaatgatcaataaagaaattgatttggtctt |
193 |
Q |
| |
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|||||||| ||| |||||| || ||||||||||||||||||||||| |||||||| | | ||||||||||||| |
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| T |
11165461 |
taaatgatccagatgttagctcgaagctttcgtcaaaagaaaaggaaaatatcaataacgcagttgatttggtctt |
11165386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 220
Target Start/End: Complemental strand, 11169788 - 11169586
Alignment:
| Q |
18 |
agagaagctgagaagtacaaagatgaagacaagaggtatatgaagaaggtagaagcgagagttgtactagagacgtatgcatacaacatgaggaatgcca |
117 |
Q |
| |
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||||||||||| || |||||||||||||||| |||| ||| ||||||||| ||||||||| || |||||||| ||| |||||||| |||||| | || |
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| T |
11169788 |
agagaagctgacaaatacaaagatgaagacatgaggcataggaagaaggttgaagcgagaaatgcactagagatgtacgcatacaatatgagggaattca |
11169689 |
T |
|
| Q |
118 |
taaatgataaggatattagcttgaggctttcgtcaaaagaaaaggaaatgatcaataaagaaattgatttggtcttaaggtggttcgatgttaatgtggt |
217 |
Q |
| |
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|||||||| ||||||||||| || | |||||||||||||||||| || |||||||| | || |||||||||||| | |||| | || ||||||||||| |
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| T |
11169688 |
taaatgatccggatattagctcgaagatttcgtcaaaagaaaaggcaaacatcaataacgcaactgatttggtctttaagtggcttgacgttaatgtggt |
11169589 |
T |
|
| Q |
218 |
tgc |
220 |
Q |
| |
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||| |
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| T |
11169588 |
tgc |
11169586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 8 - 193
Target Start/End: Complemental strand, 11208620 - 11208435
Alignment:
| Q |
8 |
gaggaggagcagagaagctgagaagtacaaagatgaagacaagaggtatatgaagaaggtagaagcgagagttgtactagagacgtatgcatacaacatg |
107 |
Q |
| |
|
||||| || ||| ||||||||||| |||||||||||||||| |||| ||| ||||||||| ||| ||||| || |||||||| ||| |||||||| ||| |
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| T |
11208620 |
gaggatgatcagtgaagctgagaaatacaaagatgaagacatgaggcataggaagaaggttgaatcgagaaatgcactagagaagtacgcatacaatatg |
11208521 |
T |
|
| Q |
108 |
aggaatgccataaatgataaggatattagcttgaggctttcgtcaaaagaaaaggaaatgatcaataaagaaattgatttggtctt |
193 |
Q |
| |
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||| || ||||||||||| || |||||| || ||||||||||||||||||||||| ||||||||| | | ||||||||||||| |
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| T |
11208520 |
agggattccataaatgatccagaagttagctcgaagctttcgtcaaaagaaaaggaaaagatcaataacgcagttgatttggtctt |
11208435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 21 - 220
Target Start/End: Complemental strand, 11275169 - 11274970
Alignment:
| Q |
21 |
gaagctgagaagtacaaagatgaagacaagaggtatatgaagaaggtagaagcgagagttgtactagagacgtatgcatacaacatgaggaatgccataa |
120 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| ||| ||| ||||| ||||||||| || |||||||| ||| |||||||| |||||| || ||||| |
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| T |
11275169 |
gaagctgagaagtacaaagatgaagacattaggcataggaaaaaggttgaagcgagaaatgcactagagaagtacgcatacaatatgagggatttcataa |
11275070 |
T |
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| Q |
121 |
atgataaggatattagcttgaggctttcgtcaaaagaaaaggaaatgatcaataaagaaattgatttggtcttaaggtggttcgatgttaatgtggttgc |
220 |
Q |
| |
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||||| ||||||| || || |||||| | |||||||||||||| |||||||| | || |||||||||||| | |||| | || |||||||||||||| |
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| T |
11275069 |
atgatcccgatattatctcgaagctttcattaaaagaaaaggaaaacatcaataatgcaactgatttggtctttaagtggcttgacgttaatgtggttgc |
11274970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 20 - 194
Target Start/End: Complemental strand, 11132225 - 11132051
Alignment:
| Q |
20 |
agaagctgagaagtacaaagatgaagacaagaggtatatgaagaaggtagaagcgagagttgtactagagacgtatgcatacaacatgaggaatgccata |
119 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||| ||||||||||||| | ||| || | | |||| || |||||| |||||||||||||||||| |
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| T |
11132225 |
agaagctgagaagtacaaggatgaagacaagatgtataggaagaaggtagaaacaagaaatgcattggagaagtgtgcatataacatgaggaatgccata |
11132126 |
T |
|
| Q |
120 |
aatgataaggatattagcttgaggctttcgtcaaaagaaaaggaaatgatcaataaagaaattgatttggtctta |
194 |
Q |
| |
|
|| |||||||| |||| ||| |||||||| | |||| |||||| ||||| |||| |||||||| ||||||| |
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|
| T |
11132125 |
aacgataaggagattatgatgaagctttcgttagaagacaaggaagtgatcgataacacaattgattcggtctta |
11132051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 83 - 219
Target Start/End: Original strand, 11242016 - 11242153
Alignment:
| Q |
83 |
actagagacgtatgcatacaacatgaggaatgccataaatgataaggatattagcttgaggctttcgtcaaa--agaaaaggaaatgatcaataaagaaa |
180 |
Q |
| |
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|||| ||| ||||||||||||||| ||||||||||||||||||||||||||| ||| || |||||||| ||| | ||||||||| ||| ||||||| || |
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| T |
11242016 |
actaaagaagtatgcatacaacataaggaatgccataaatgataaggatatttgctcgaagctttcgtaaaacgaaaaaaggaaaagattaataaagcaa |
11242115 |
T |
|
| Q |
181 |
ttgatttggtcttaaggtggttcgatgttaatgtggttg |
219 |
Q |
| |
|
|| |||||||||| | ||| | |||||||||||||||| |
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|
| T |
11242116 |
tt-atttggtcttcacatggcttgatgttaatgtggttg |
11242153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 92 - 173
Target Start/End: Original strand, 11315745 - 11315826
Alignment:
| Q |
92 |
gtatgcatacaacatgaggaatgccataaatgataaggatattagcttgaggctttcgtcaaaagaaaaggaaatgatcaat |
173 |
Q |
| |
|
|||||||||||| |||| | ||||||| |||||||||||||||||||| | ||||| ||||||||||||| ||| ||||||| |
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|
| T |
11315745 |
gtatgcatacaagatgaaggatgccattaatgataaggatattagctttatgcttttgtcaaaagaaaagaaaaagatcaat |
11315826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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