View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12259_high_15 (Length: 212)
Name: NF12259_high_15
Description: NF12259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12259_high_15 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 96; Significance: 3e-47; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 85 - 212
Target Start/End: Original strand, 21581908 - 21582035
Alignment:
| Q |
85 |
cacacacatacattatgatcatacaaagatggcaaccgaacaaccaaagactcccacataacatgttgacgattagcagcacaaggggaataaacgttaa |
184 |
Q |
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| T |
21581908 |
cacacacatacattatgatcatacaaagatgtcaaccgaacaaccaaagactcccacagaatctgttgacgattagcagcacaaggggcataaacattaa |
21582007 |
T |
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| Q |
185 |
caatagcaaactcatctcctgacttcac |
212 |
Q |
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| T |
21582008 |
aaatagtaaactcatctcctgacttcac |
21582035 |
T |
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Target: chr2; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 8 - 75
Target Start/End: Original strand, 21581769 - 21581836
Alignment:
| Q |
8 |
gaacctgtgaccccagagtggtaaatccaccaaacaagaatccttaattaatcggttaaaagacacgc |
75 |
Q |
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| T |
21581769 |
gaacctgcgaccctggagtggtaaatccaccaaacaagaatcctcaattaaccggttaaaagacacgc |
21581836 |
T |
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