View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12259_low_1 (Length: 527)

Name: NF12259_low_1
Description: NF12259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12259_low_1
NF12259_low_1
[»] chr3 (10 HSPs)
chr3 (240-511)||(19576481-19576748)
chr3 (9-139)||(19576251-19576381)
chr3 (5-71)||(16229981-16230046)
chr3 (5-69)||(20023579-20023643)
chr3 (9-70)||(27413925-27413986)
chr3 (5-71)||(8889191-8889256)
chr3 (7-70)||(19167407-19167469)
chr3 (5-56)||(19909999-19910050)
chr3 (297-375)||(7147705-7147783)
chr3 (6-70)||(8169881-8169944)
[»] chr2 (7 HSPs)
chr2 (257-507)||(25534824-25535073)
chr2 (5-134)||(26667248-26667378)
chr2 (8-112)||(17197821-17197926)
chr2 (5-71)||(25530442-25530507)
chr2 (7-71)||(24090967-24091030)
chr2 (5-71)||(25535269-25535334)
chr2 (62-113)||(25920247-25920299)
[»] chr1 (7 HSPs)
chr1 (257-504)||(18830060-18830306)
chr1 (5-113)||(16916972-16917081)
chr1 (294-385)||(15808280-15808371)
chr1 (5-71)||(23179792-23179858)
chr1 (7-70)||(14781894-14781956)
chr1 (5-71)||(24053974-24054038)
chr1 (7-71)||(727463-727525)
[»] chr8 (3 HSPs)
chr8 (257-507)||(16403476-16403725)
chr8 (294-374)||(19786477-19786557)
chr8 (7-77)||(16403900-16403970)
[»] chr7 (6 HSPs)
chr7 (7-110)||(16059062-16059165)
chr7 (9-101)||(22067268-22067361)
chr7 (9-81)||(17191244-17191316)
chr7 (7-71)||(13277498-13277561)
chr7 (41-113)||(11570105-11570178)
chr7 (7-71)||(13289448-13289512)
[»] chr5 (4 HSPs)
chr5 (257-386)||(20745033-20745161)
chr5 (5-112)||(16523829-16523937)
chr5 (5-99)||(20549743-20549838)
chr5 (7-68)||(20564121-20564182)
[»] chr4 (4 HSPs)
chr4 (7-112)||(17026373-17026479)
chr4 (7-71)||(25097829-25097893)
chr4 (7-65)||(25094568-25094626)
chr4 (14-71)||(12406739-12406796)
[»] scaffold0034 (1 HSPs)
scaffold0034 (5-71)||(76412-76478)
[»] scaffold0671 (1 HSPs)
scaffold0671 (7-77)||(430-500)
[»] scaffold0386 (2 HSPs)
scaffold0386 (9-71)||(6136-6198)
scaffold0386 (5-71)||(6742-6808)
[»] chr6 (5 HSPs)
chr6 (11-71)||(22413094-22413153)
chr6 (5-71)||(23009433-23009498)
chr6 (5-71)||(23778866-23778931)
chr6 (5-70)||(24657494-24657558)
chr6 (7-43)||(17827133-17827168)


Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 240 - 511
Target Start/End: Original strand, 19576481 - 19576748
Alignment:
Q  240 gggtatagtaagtattttaattattattacttatatttacttaatagaatactactacttgggtatttttgtttgtgattgttttagggaacgaataatg 339  Q
    ||||||||||||||||||||||||||||||||| ||||||||  |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  19576481 gggtatagtaagtattttaattattattacttacatttacttc-tagaatactactacttaggtatttttgtttgtgattgtttcagggaacgaataatg 19576579  T
Q  340 gatcattcttcaacaaaccagttcaatcattacaacgaaatctacccaaagaagtatcagatgtctaactctgacttattagaatatgaaccaacccgat 439  Q
    |||||||||||||||||| |||||||||||||||| |||||||||||   |||||||||||||||| ||||| ||||||||||||| |||||| ||| ||    
T  19576580 gatcattcttcaacaaactagttcaatcattacaatgaaatctaccc---gaagtatcagatgtctgactctaacttattagaatacgaaccatcccaat 19576676  T
Q  440 acgatttaacgactaatgcagtgtctatggcttatgctgcactcaatgaatgtatcgagaatttaataaatg 511  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  19576677 acgatttaacgactaaagcagtgtctatggcttatactgcactcaatgaatgtatcgaggatttaataaatg 19576748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 9 - 139
Target Start/End: Original strand, 19576251 - 19576381
Alignment:
Q  9 tggatacgatactctatttactaactttattacttgaggaaaacgactggtgcacttgccattgcgcaactacacaatcgaattaagcacgaaagtgtgc 108  Q
    |||||||||||||||  | |||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||    
T  19576251 tggatacgatactctcctcactaactttattacttgatgaaaacgactggtacacttgtcattgcgcaactacacaatcgaattaaacacgaaagtgtgc 19576350  T
Q  109 atcaaatttttgacgccgttgtcggggattg 139  Q
    |||||||||||| ||||||||||||| ||||    
T  19576351 atcaaatttttggcgccgttgtcgggtattg 19576381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 5 - 71
Target Start/End: Original strand, 16229981 - 16230046
Alignment:
Q  5 cctgtggatacgatactctatttactaactttattacttgaggaaaacgactggtgcacttgccatt 71  Q
    |||||||||||||||||||| |||||| ||||||||||||| |||||||||| || |||||||||||    
T  16229981 cctgtggatacgatactctacttacta-ctttattacttgatgaaaacgactagtacacttgccatt 16230046  T

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Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 5 - 69
Target Start/End: Original strand, 20023579 - 20023643
Alignment:
Q  5 cctgtggatacgatactctatttactaactttattacttgaggaaaacgactggtgcacttgcca 69  Q
    ||||| ||||| ||||| || |||||||||||||||||||| ||||||||||||| |||||||||    
T  20023579 cctgttgatacaatactttacttactaactttattacttgatgaaaacgactggtacacttgcca 20023643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 27413925 - 27413986
Alignment:
Q  9 tggatacgatactctatttactaactttattacttgaggaaaacgactggtgcacttgccat 70  Q
    |||||| ||||||||| |||||||||||||||| ||| |||||||| |||| ||||||||||    
T  27413925 tggatatgatactctacttactaactttattacatgatgaaaacgattggtacacttgccat 27413986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 5 - 71
Target Start/End: Original strand, 8889191 - 8889256
Alignment:
Q  5 cctgtggatacgatactctatttactaactttattacttgaggaaaacgactggtgcacttgccatt 71  Q
    ||||||||||| |||||||| ||| | |||||||||||||| |||||||||| || |||||||||||    
T  8889191 cctgtggatacaatactctactta-tcactttattacttgatgaaaacgacttgtacacttgccatt 8889256  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 70
Target Start/End: Complemental strand, 19167469 - 19167407
Alignment:
Q  7 tgtggatacgatactctatttactaactttattacttgaggaaaacgactggtgcacttgccat 70  Q
    ||||||||||||||||||||||| |||||| |||||||| |  ||||||| || ||||||||||    
T  19167469 tgtggatacgatactctatttac-aactttcttacttgatgtgaacgactagtacacttgccat 19167407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 56
Target Start/End: Original strand, 19909999 - 19910050
Alignment:
Q  5 cctgtggatacgatactctatttactaactttattacttgaggaaaacgact 56  Q
    |||||||||||||||||||| | |||||||| ||||||||| | ||||||||    
T  19909999 cctgtggatacgatactctactgactaacttcattacttgatgtaaacgact 19910050  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 297 - 375
Target Start/End: Complemental strand, 7147783 - 7147705
Alignment:
Q  297 cttgggtatttttgtttgtgattgttttagggaacgaataatggatcattcttcaacaaaccagttcaatcattacaac 375  Q
    ||||||||| ||||||| || || ||| ||| ||| ||| |||||| ||| | ||||| ||||||||||||||||||||    
T  7147783 cttgggtatatttgtttatggttatttcaggaaacaaatcatggattattttacaacagaccagttcaatcattacaac 7147705  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 6 - 70
Target Start/End: Complemental strand, 8169944 - 8169881
Alignment:
Q  6 ctgtggatacgatactctatttactaactttattacttgaggaaaacgactggtgcacttgccat 70  Q
    |||||||||||||| | || |||||| ||||||||||||| |  |||||||||| ||||||||||    
T  8169944 ctgtggatacgatattttacttacta-ctttattacttgatgtgaacgactggtacacttgccat 8169881  T

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Target: chr2 (Bit Score: 127; Significance: 2e-65; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 257 - 507
Target Start/End: Complemental strand, 25535073 - 25534824
Alignment:
Q  257 taattattattacttatatttacttaatagaatactactacttgggtatttttgtttgtgattgttttagggaacgaataatggatcattcttcaacaaa 356  Q
    |||||||||||| ||||| ||||||| |||| || | ||||||| ||||||||||||||||||||||  ||| ||||||||||||  |||||||||||||    
T  25535073 taattattattatttatagttactta-tagattagtgctacttgagtatttttgtttgtgattgtttcggggtacgaataatggaaaattcttcaacaaa 25534975  T
Q  357 ccagttcaatcattacaacgaaatctacccaaagaagtatcagatgtctaactctgacttattagaatatgaaccaacccgatacgatttaacgactaat 456  Q
    |||||||||||||||||||||||||||||  |||||||||||||||||| |||||||||||| |||||| |||| |  ||||||||| |||| ||||||     
T  25534974 ccagttcaatcattacaacgaaatctacctcaagaagtatcagatgtctgactctgacttatcagaatacgaacaacaccgatacgaattaatgactaaa 25534875  T
Q  457 gcagtgtctatggcttatgctgcactcaatgaatgtatcgagaatttaata 507  Q
    ||  |||||||||| |||| ||||||||||||| ||||| || ||||||||    
T  25534874 gcgatgtctatggcatatgttgcactcaatgaaggtatcaaggatttaata 25534824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 5 - 134
Target Start/End: Complemental strand, 26667378 - 26667248
Alignment:
Q  5 cctgtggatacgatactctatttactaactttattacttgaggaaaacgactggtgcacttgccattgcgcaactacac-aatcgaattaagcacgaaag 103  Q
    |||||||||||||||||||| |||||||||||||||||||| ||||| ||||||| ||||||||||||||||| ||| | | ||||||||  ||||||||    
T  26667378 cctgtggatacgatactctacttactaactttattacttgatgaaaatgactggtacacttgccattgcgcaattacgctattcgaattagacacgaaag 26667279  T
Q  104 tgtgcatcaaatttttgacgccgttgtcggg 134  Q
    | |||||||| ||||||  ||||||| ||||    
T  26667278 tatgcatcaagtttttggtgccgttgccggg 26667248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 8 - 112
Target Start/End: Complemental strand, 17197926 - 17197821
Alignment:
Q  8 gtggatacgatactctatttactaactttattacttgaggaaaacgactggtgcacttgccattgcgcaactacac-aatcgaattaagcacgaaagtgt 106  Q
    |||||||| |||||||| ||||||||||||| |||||| |||||| |||||| ||||||||||||| ||||||| | ||||||||||| |||||||||||    
T  17197926 gtggatacaatactctacttactaactttataacttgatgaaaacaactggtacacttgccattgcacaactacgctaatcgaattaaacacgaaagtgt 17197827  T
Q  107 gcatca 112  Q
    ||||||    
T  17197826 gcatca 17197821  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 5 - 71
Target Start/End: Complemental strand, 25530507 - 25530442
Alignment:
Q  5 cctgtggatacgatactctatttactaactttattacttgaggaaaacgactggtgcacttgccatt 71  Q
    |||||||||||||||||||| ||| | |||||||||||||| |||||||| |||| |||||||||||    
T  25530507 cctgtggatacgatactctactta-tcactttattacttgatgaaaacgattggtacacttgccatt 25530442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 7 - 71
Target Start/End: Original strand, 24090967 - 24091030
Alignment:
Q  7 tgtggatacgatactctatttactaactttattacttgaggaaaacgactggtgcacttgccatt 71  Q
    ||||||||||||| |||||||| | |||||||||||||| ||||||||||||| ||||| |||||    
T  24090967 tgtggatacgatattctattta-tcactttattacttgatgaaaacgactggtacactttccatt 24091030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 5 - 71
Target Start/End: Complemental strand, 25535334 - 25535269
Alignment:
Q  5 cctgtggatacgatactctatttactaactttattacttgaggaaaacgactggtgcacttgccatt 71  Q
    |||||||||||||||||||| ||| | |||||||||||||| |||||| ||| || |||||| ||||    
T  25535334 cctgtggatacgatactctactta-tcactttattacttgatgaaaacaactagtacacttgtcatt 25535269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 62 - 113
Target Start/End: Complemental strand, 25920299 - 25920247
Alignment:
Q  62 acttgccattgcgcaactacac-aatcgaattaagcacgaaagtgtgcatcaa 113  Q
    |||||||||| || |||||| | ||||||||||| ||||||||||||||||||    
T  25920299 acttgccatttcgtaactacgctaatcgaattaaacacgaaagtgtgcatcaa 25920247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 96; Significance: 8e-47; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 257 - 504
Target Start/End: Complemental strand, 18830306 - 18830060
Alignment:
Q  257 taattattattacttatatttacttaatagaatactactacttgggtatttttgtttgtgattgttttagggaacgaataatggatcattcttcaacaaa 356  Q
    |||||||||||| ||| | ||||||  ||||||  | |||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| ||    
T  18830306 taattattattatttacagttacttc-tagaattgtgctacttgggtatttttgtttgtgattgtttcagggaacgaataatggataattcttcaacgaa 18830208  T
Q  357 ccagttcaatcattacaacgaaatctacccaaagaagtatcagatgtctaactctgacttattagaatatgaaccaacccgatacgatttaacgactaat 456  Q
    ||||||||||||||||||||||||| | || ||| ||||||| |||||| | ||||||||||  || ||||||| | |||||||| | |||| |||  |     
T  18830207 ccagttcaatcattacaacgaaatccatcccaaggagtatcatatgtctgattctgacttatgggagtatgaacaagcccgatacaaattaatgacggaa 18830108  T
Q  457 gcagtgtctatggcttatgctgcactcaatgaatgtatcgagaattta 504  Q
    ||| |||||||||| |||||| || | ||| || |||||||| |||||    
T  18830107 gcaatgtctatggcatatgcttcaattaataaaagtatcgaggattta 18830060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 5 - 113
Target Start/End: Original strand, 16916972 - 16917081
Alignment:
Q  5 cctgtggatacgatactctatttactaactttattacttgaggaaaacgactggtgcacttgccattgcgcaactacac-aatcgaattaagcacgaaag 103  Q
    |||||||||||||||||||| ||||||||||||||||||||  |||| ||||||| ||||| ||||| ||||||||| | ||||||||||| ||| |||     
T  16916972 cctgtggatacgatactctacttactaactttattacttgataaaaatgactggtacacttaccatttcgcaactacgctaatcgaattaaacacaaaaa 16917071  T
Q  104 tgtgcatcaa 113  Q
    ||||||||||    
T  16917072 tgtgcatcaa 16917081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 294 - 385
Target Start/End: Original strand, 15808280 - 15808371
Alignment:
Q  294 ctacttgggtatttttgtttgtgattgttttagggaacgaataatggatcattcttcaacaaaccagttcaatcattacaacgaaatctacc 385  Q
    |||||||||||||||||| | ||||||||| ||||||| ||||||| |||||| ||||||||| ||| ||||||||| ||||||||||||||    
T  15808280 ctacttgggtatttttgtctatgattgtttgagggaacaaataatgaatcatttttcaacaaatcaggtcaatcatttcaacgaaatctacc 15808371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 5 - 71
Target Start/End: Complemental strand, 23179858 - 23179792
Alignment:
Q  5 cctgtggatacgatactctatttactaactttattacttgaggaaaacgactggtgcacttgccatt 71  Q
    |||||||||| |||||||||||||||||||||||||||||| ||||| ||||||  |||||||||||    
T  23179858 cctgtggatatgatactctatttactaactttattacttgatgaaaatgactggcacacttgccatt 23179792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 7 - 70
Target Start/End: Original strand, 14781894 - 14781956
Alignment:
Q  7 tgtggatacgatactctatttactaactttattacttgaggaaaacgactggtgcacttgccat 70  Q
    |||||||||||||||||| |||||| ||||||||||||| ||||||||||||| ||||||||||    
T  14781894 tgtggatacgatactctacttacta-ctttattacttgatgaaaacgactggtacacttgccat 14781956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 5 - 71
Target Start/End: Complemental strand, 24054038 - 24053974
Alignment:
Q  5 cctgtggatacgatactctatttactaactttattacttgaggaaaacgactggtgcacttgccatt 71  Q
    |||||||||| ||||||||| ||| || ||||||||||||| ||||||||||||| |||||||||||    
T  24054038 cctgtggata-gatactctacttatta-ctttattacttgatgaaaacgactggtacacttgccatt 24053974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 727525 - 727463
Alignment:
Q  7 tgtggatacgatactctatttactaactttattacttgaggaaaacgactggtgcacttgccatt 71  Q
    ||||||| |||||||||| ||| | |||||||||||||| |||| |||||||| |||||||||||    
T  727525 tgtggatgcgatactctactta-tcactttattacttgatgaaa-cgactggtacacttgccatt 727463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 83; Significance: 4e-39; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 257 - 507
Target Start/End: Complemental strand, 16403725 - 16403476
Alignment:
Q  257 taattattattacttatatttacttaatagaatactactacttgggtatttttgtttgtgattgttttagggaacgaataatggatcattcttcaacaaa 356  Q
    |||||||||||| ||| ||||| ||  ||||||| | |||||||||||||||||||||||||| ||| || |||||||||||||||  |||||   ||||    
T  16403725 taattattattatttacatttatttc-tagaatagttctacttgggtatttttgtttgtgattatttcagagaacgaataatggatagttcttttgcaaa 16403627  T
Q  357 ccagttcaatcattacaacgaaatctacccaaagaagtatcagatgtctaactctgacttattagaatatgaaccaacccgatacgatttaacgactaat 456  Q
    |||||||||||||||||||  |||||| || ||||||||||||||||||   ||||||||||  || || |||| | | |||||| |||||| ||| ||     
T  16403626 ccagttcaatcattacaacataatctatcccaagaagtatcagatgtctgcttctgacttatgggagtacgaacaagctcgatacaatttaatgacaaaa 16403527  T
Q  457 gcagtgtctatggcttatgctgcactcaatgaatgtatcgagaatttaata 507  Q
    ||  || ||||||| || ||||||||||||||| |||| ||| ||||||||    
T  16403526 gcgatgactatggcatacgctgcactcaatgaaagtattgaggatttaata 16403476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 294 - 374
Target Start/End: Complemental strand, 19786557 - 19786477
Alignment:
Q  294 ctacttgggtatttttgtttgtgattgttttagggaacgaataatggatcattcttcaacaaaccagttcaatcattacaa 374  Q
    |||||||||||||||||||| || |||||| ||||||||||| |||||| ||| | ||||| || ||||||||||||||||    
T  19786557 ctacttgggtatttttgtttatggttgtttcagggaacgaatcatggatgattttgcaacagactagttcaatcattacaa 19786477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 7 - 77
Target Start/End: Complemental strand, 16403970 - 16403900
Alignment:
Q  7 tgtggatacgatactctatttactaactttattacttgaggaaaacgactggtgcacttgccattgcgcaa 77  Q
    ||||||||||||||||||  |||||||||||||| || | ||||| ||||||| |||||||||||| ||||    
T  16403970 tgtggatacgatactctacatactaactttattatttaatgaaaatgactggtacacttgccattgtgcaa 16403900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 7 - 110
Target Start/End: Original strand, 16059062 - 16059165
Alignment:
Q  7 tgtggatacgatactctatttactaactttattacttgaggaaaacgactggtgcacttgccattgcgcaactacac-aatcgaattaagcacgaaagtg 105  Q
    |||||||||||||||||| |||||||||||||||||||| ||||||||  ||| ||||||||||||||||||||||| |||| |||||| ||||||||||    
T  16059062 tgtggatacgatactctacttactaactttattacttgatgaaaacgatcggtacacttgccattgcgcaactacactaatccaattaa-cacgaaagtg 16059160  T
Q  106 tgcat 110  Q
    |||||    
T  16059161 tgcat 16059165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 9 - 101
Target Start/End: Original strand, 22067268 - 22067361
Alignment:
Q  9 tggatacgatactctatttactaactttattacttgaggaaaacgactggtgcacttgccattgcgcaactacac-aatcgaattaagcacgaa 101  Q
    |||||| ||||||||| |||||||||||||||||| | ||||||||||||| ||||||||||||||||||||| | ||||||| ||| ||||||    
T  22067268 tggatatgatactctacttactaactttattactttatgaaaacgactggtacacttgccattgcgcaactacgctaatcgaaataaacacgaa 22067361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 9 - 81
Target Start/End: Original strand, 17191244 - 17191316
Alignment:
Q  9 tggatacgatactctatttactaactttattacttgaggaaaacgactggtgcacttgccattgcgcaactac 81  Q
    |||||||||||||||| ||||||||||||||||||||  |||||||||||| |||||| ||||||||||||||    
T  17191244 tggatacgatactctacttactaactttattacttgataaaaacgactggtacacttgtcattgcgcaactac 17191316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 13277561 - 13277498
Alignment:
Q  7 tgtggatacgatactctatttactaactttattacttgaggaaaacgactggtgcacttgccatt 71  Q
    |||||||||||||||||||||| | ||| |||||||||| ||||||||||||| |||||||||||    
T  13277561 tgtggatacgatactctattta-tcactgtattacttgatgaaaacgactggtacacttgccatt 13277498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 41 - 113
Target Start/End: Complemental strand, 11570178 - 11570105
Alignment:
Q  41 cttgaggaaaacgactggtgcacttgccattgcgcaactacac-aatcgaattaagcacgaaagtgtgcatcaa 113  Q
    ||||| ||||||||||||| ||||||||||||||||||||| | | |||||| || || |||||||||||||||    
T  11570178 cttgatgaaaacgactggtacacttgccattgcgcaactacgctattcgaataaaacatgaaagtgtgcatcaa 11570105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 7 - 71
Target Start/End: Original strand, 13289448 - 13289512
Alignment:
Q  7 tgtggatacgatactctatttactaactttattacttgaggaaaacgactggtgcacttgccatt 71  Q
    ||||||||| ||| | || |||||||||||||||||||| ||||||||||||| |||||| ||||    
T  13289448 tgtggatacaatattatacttactaactttattacttgatgaaaacgactggtacacttgtcatt 13289512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 257 - 386
Target Start/End: Original strand, 20745033 - 20745161
Alignment:
Q  257 taattattattacttatatttacttaatagaatactactacttgggtatttttgtttgtgattgttttagggaacgaataatggatcattcttcaacaaa 356  Q
    |||||||||||| ||| | ||||||  ||||| | | ||||||| ||||||||||||||| || ||| |||||| |||||||||| |||||||||||| |    
T  20745033 taattattattatttacagttacttc-tagaacagttctacttgagtatttttgtttgtggttatttcagggaaagaataatggaccattcttcaacata 20745131  T
Q  357 ccagttcaatcattacaacgaaatctaccc 386  Q
    ||||||||||||||| ||||||||||||||    
T  20745132 ccagttcaatcattagaacgaaatctaccc 20745161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 5 - 112
Target Start/End: Original strand, 16523829 - 16523937
Alignment:
Q  5 cctgtggatacgatactctatttactaactttattacttgaggaaaacgactggtgcacttgccattgcgcaactacac-aatcgaattaagcacgaaag 103  Q
    ||||||||||| |||||||| |||| ||||||||||||||| ||||||||||||| |||||| ||||| |||||||| | |||| |||||| ||||||||    
T  16523829 cctgtggatacaatactctacttacgaactttattacttgatgaaaacgactggtacacttgtcattgtgcaactacgctaatcaaattaaacacgaaag 16523928  T
Q  104 tgtgcatca 112  Q
    |||||||||    
T  16523929 tgtgcatca 16523937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 5 - 99
Target Start/End: Original strand, 20549743 - 20549838
Alignment:
Q  5 cctgtggatacgatactctatttactaactttattacttgaggaaaacgactggtgcacttgccattgcgcaactacac-aatcgaattaagcacg 99  Q
    |||||||||||||||||||| ||||||| |||||||||||| ||||||||| ||| ||||| ||||||||||||||| | ||||||||||| ||||    
T  20549743 cctgtggatacgatactctacttactaattttattacttgatgaaaacgacgggtacacttaccattgcgcaactacgctaatcgaattaaacacg 20549838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 7 - 68
Target Start/End: Original strand, 20564121 - 20564182
Alignment:
Q  7 tgtggatacgatactctatttactaactttattacttgaggaaaacgactggtgcacttgcc 68  Q
    |||||||||||||||||| |||||||||||||||||||| |||| || || || ||||||||    
T  20564121 tgtggatacgatactctacttactaactttattacttgatgaaaccgtctcgtacacttgcc 20564182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 7 - 112
Target Start/End: Original strand, 17026373 - 17026479
Alignment:
Q  7 tgtggatacgatactctatttactaactttattacttgaggaaaacgactggtgcacttgccattgcgcaactacac-aatcgaattaagcacgaaagtg 105  Q
    |||| ||||||||||||| |||||||||||| ||||||| ||||||||||||| |||||||||||| | || ||| | ||||||||||| ||||||||||    
T  17026373 tgtgaatacgatactctacttactaactttaatacttgatgaaaacgactggtacacttgccattgtgaaaatacgctaatcgaattaaacacgaaagtg 17026472  T
Q  106 tgcatca 112  Q
    | |||||    
T  17026473 tacatca 17026479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 25097893 - 25097829
Alignment:
Q  7 tgtggatacgatactctatttactaactttattacttgaggaaaacgactggtgcacttgccatt 71  Q
    |||||||||||||||||| |||||||||||||||||||| |||||| |||||| |||||||||||    
T  25097893 tgtggatacgatactctacttactaactttattacttgatgaaaacaactggtacacttgccatt 25097829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 7 - 65
Target Start/End: Complemental strand, 25094626 - 25094568
Alignment:
Q  7 tgtggatacgatactctatttactaactttattacttgaggaaaacgactggtgcactt 65  Q
    |||||||| ||||||||| |||||||||||||||||||| |||||| |||||| |||||    
T  25094626 tgtggatatgatactctacttactaactttattacttgatgaaaactactggtacactt 25094568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 14 - 71
Target Start/End: Original strand, 12406739 - 12406796
Alignment:
Q  14 acgatactctatttactaactttattacttgaggaaaacgactggtgcacttgccatt 71  Q
    |||||| |||| |||||||||||||| ||||| |||||||| |||| |||||||||||    
T  12406739 acgatattctacttactaactttattgcttgatgaaaacgaatggttcacttgccatt 12406796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 5 - 71
Target Start/End: Complemental strand, 76478 - 76412
Alignment:
Q  5 cctgtggatacgatactctatttactaactttattacttgaggaaaacgactggtgcacttgccatt 71  Q
    |||||||||| ||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||    
T  76478 cctgtggatatgatactctacttactaactttattacttgatgaaaacgactggtacacttgccatt 76412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0671 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0671
Description:

Target: scaffold0671; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 7 - 77
Target Start/End: Complemental strand, 500 - 430
Alignment:
Q  7 tgtggatacgatactctatttactaactttattacttgaggaaaacgactggtgcacttgccattgcgcaa 77  Q
    ||||||||||||||||||  |||||||||||||| || | ||||||||||||| |||||||||||| ||||    
T  500 tgtggatacgatactctacatactaactttattattttatgaaaacgactggtacacttgccattgtgcaa 430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 71
Target Start/End: Original strand, 6136 - 6198
Alignment:
Q  9 tggatacgatactctatttactaactttattacttgaggaaaacgactggtgcacttgccatt 71  Q
    |||||| |||||| || || ||||||||||||||||| |||||||| |||| |||||||||||    
T  6136 tggatatgatactatacttgctaactttattacttgatgaaaacgaatggttcacttgccatt 6198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 5 - 71
Target Start/End: Original strand, 6742 - 6808
Alignment:
Q  5 cctgtggatacgatactctatttactaactttattacttgaggaaaacgactggtgcacttgccatt 71  Q
    |||||||||| ||||||||| || |||||||| |||||||| |||||| | | || |||||||||||    
T  6742 cctgtggatatgatactctacttgctaacttttttacttgatgaaaacaaatagttcacttgccatt 6808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 71
Target Start/End: Original strand, 22413094 - 22413153
Alignment:
Q  11 gatacgatactctatttactaactttattacttgaggaaaacgactggtgcacttgccatt 71  Q
    |||||||||||||| ||| |||||||||||||||| ||||||||||| |  ||||||||||    
T  22413094 gatacgatactctactta-taactttattacttgatgaaaacgactgatatacttgccatt 22413153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 5 - 71
Target Start/End: Original strand, 23009433 - 23009498
Alignment:
Q  5 cctgtggatacgatactctatttactaactttattacttgaggaaaacgactggtgcacttgccatt 71  Q
    |||||||||||||| ||||| ||| | |||||| ||||||| |||||||||| || |||||||||||    
T  23009433 cctgtggatacgatgctctactta-tcactttaatacttgatgaaaacgactagtccacttgccatt 23009498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 5 - 71
Target Start/End: Complemental strand, 23778931 - 23778866
Alignment:
Q  5 cctgtggatacgatactctatttactaactttattacttgaggaaaacgactggtgcacttgccatt 71  Q
    |||||||||||||| ||||| ||| | |||||| ||||||| |||||||||| || |||||||||||    
T  23778931 cctgtggatacgatgctctactta-tcactttaatacttgatgaaaacgactagtccacttgccatt 23778866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 70
Target Start/End: Original strand, 24657494 - 24657558
Alignment:
Q  5 cctgtggatacgatactctatttactaactttattacttgaggaaaacgactggtgcacttgccat 70  Q
    |||||||||||||||||| | ||| | | |||||||||||| ||||| ||||||| ||||||||||    
T  24657494 cctgtggatacgatactcgactta-tcattttattacttgatgaaaatgactggtacacttgccat 24657558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 17827133 - 17827168
Alignment:
Q  7 tgtggatacgatactctatttactaactttattactt 43  Q
    |||||||||||||||||||||| ||||||||||||||    
T  17827133 tgtggatacgatactctattta-taactttattactt 17827168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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