View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12259_low_10 (Length: 294)
Name: NF12259_low_10
Description: NF12259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12259_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 26 - 279
Target Start/End: Original strand, 55852535 - 55852788
Alignment:
| Q |
26 |
tcaaaacaaaccagagattcatcattatcaacaacaacaataaataataatagaatttaagagagagnnnnnnnnnnnnnnnnnngattatgaactaaag |
125 |
Q |
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| T |
55852535 |
tcaaaacaaaccagagattcatcattatcaacaacaacaataaataataatagaatttaagagagagaaaaaattaaaataaaaagattatgaactaaag |
55852634 |
T |
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| Q |
126 |
aaagagcctgaaacagcaatagatggaacacaaaatcaggattgaaatcatagaaagagattcgaaaggaacagcatctatcaacaacggtaggaaaaat |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55852635 |
aaagagcctgaaacagcaatagatggaacacaaaatcaggattgaaatcatagaaagagattcgaaaggaacagcatctatcaacaacggtaggaaaaat |
55852734 |
T |
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| Q |
226 |
cagaaaaagattatcaacatcaagatcaaatagatataacaaaaacaagaatat |
279 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55852735 |
cagaaaaagattatcaacatcaagatcaaatagatataacaaaaacaagaatat |
55852788 |
T |
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