View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12259_low_18 (Length: 204)
Name: NF12259_low_18
Description: NF12259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12259_low_18 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 17 - 188
Target Start/End: Original strand, 25146640 - 25146811
Alignment:
| Q |
17 |
aaggcaatgaaaatgttggttagtaaatttttaaccaaacataagcctaaagtctgagtaatttatcac-tgaaaggatatttaaccattacatatatag |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
25146640 |
aaggcaatgaaaatgttggttagtaaatttttaaccaaacataagcctaa-gtctgagtaatttatcacctgaaaggatatttaaccattacatacatag |
25146738 |
T |
|
| Q |
116 |
aaatcatagatggtcctaatttgaaagataattgattacctttctatcaattattaatagttatgacccaaaa |
188 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
25146739 |
aaatcataaatggtcctaatttgaaagataattgattacctttctatcaatgattaatagttatgacccaaaa |
25146811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University