View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12259_low_8 (Length: 321)

Name: NF12259_low_8
Description: NF12259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12259_low_8
NF12259_low_8
[»] chr7 (31 HSPs)
chr7 (120-286)||(37133475-37133641)
chr7 (126-286)||(46245189-46245349)
chr7 (141-286)||(37131902-37132047)
chr7 (141-285)||(15135446-15135590)
chr7 (184-286)||(12180529-12180631)
chr7 (177-286)||(14774579-14774688)
chr7 (177-286)||(15225032-15225141)
chr7 (141-255)||(11747490-11747604)
chr7 (215-286)||(45276476-45276547)
chr7 (184-286)||(11671176-11671278)
chr7 (215-286)||(8231555-8231626)
chr7 (185-286)||(12178550-12178651)
chr7 (206-286)||(13420198-13420278)
chr7 (206-286)||(37350113-37350193)
chr7 (215-286)||(4675718-4675789)
chr7 (215-282)||(21716540-21716607)
chr7 (215-286)||(31392125-31392196)
chr7 (215-282)||(31393580-31393647)
chr7 (215-286)||(32881183-32881254)
chr7 (215-286)||(32882636-32882707)
chr7 (215-286)||(40028524-40028595)
chr7 (215-286)||(40029950-40030021)
chr7 (215-282)||(45277888-45277955)
chr7 (215-285)||(30792751-30792821)
chr7 (216-286)||(37348802-37348872)
chr7 (246-286)||(21017733-21017773)
chr7 (215-286)||(8230137-8230208)
chr7 (215-282)||(21715143-21715210)
chr7 (216-286)||(46246497-46246567)
chr7 (16-45)||(37133396-37133425)
chr7 (215-283)||(9532535-9532603)
[»] chr3 (16 HSPs)
chr3 (126-286)||(40499084-40499244)
chr3 (126-286)||(31796666-31796826)
chr3 (126-286)||(41083103-41083262)
chr3 (126-286)||(48568362-48568522)
chr3 (216-286)||(22942405-22942475)
chr3 (190-286)||(30700363-30700459)
chr3 (215-286)||(33734423-33734494)
chr3 (215-286)||(53528037-53528108)
chr3 (215-286)||(31657021-31657092)
chr3 (215-286)||(33733032-33733103)
chr3 (216-286)||(31795440-31795510)
chr3 (216-286)||(41081869-41081939)
chr3 (216-286)||(48567063-48567133)
chr3 (216-286)||(53529456-53529526)
chr3 (241-286)||(41879991-41880036)
chr3 (185-269)||(30701732-30701816)
[»] chr5 (19 HSPs)
chr5 (126-286)||(38624783-38624943)
chr5 (126-286)||(11772532-11772692)
chr5 (177-286)||(17554885-17554995)
chr5 (183-286)||(16308633-16308736)
chr5 (190-286)||(27756681-27756777)
chr5 (215-286)||(1418857-1418928)
chr5 (217-286)||(30333930-30333999)
chr5 (190-286)||(16309995-16310091)
chr5 (215-286)||(25916199-25916270)
chr5 (215-286)||(30332350-30332421)
chr5 (215-286)||(39101782-39101853)
chr5 (219-286)||(1417477-1417545)
chr5 (246-286)||(28803722-28803762)
chr5 (215-286)||(8872587-8872657)
chr5 (215-282)||(25914561-25914628)
chr5 (215-286)||(28592145-28592215)
chr5 (216-286)||(8874196-8874266)
chr5 (216-286)||(36619612-36619682)
chr5 (216-286)||(38626092-38626162)
[»] chr8 (12 HSPs)
chr8 (126-285)||(1650041-1650200)
chr8 (197-286)||(2552473-2552562)
chr8 (183-286)||(5462001-5462104)
chr8 (206-285)||(39885988-39886067)
chr8 (215-286)||(33294007-33294078)
chr8 (215-286)||(33295367-33295438)
chr8 (183-249)||(15279522-15279588)
chr8 (183-249)||(15459891-15459957)
chr8 (183-286)||(3157926-3158029)
chr8 (215-282)||(25264411-25264478)
chr8 (215-282)||(25265826-25265893)
chr8 (206-286)||(39884683-39884763)
[»] chr2 (24 HSPs)
chr2 (126-286)||(45499372-45499532)
chr2 (126-286)||(40303360-40303520)
chr2 (184-286)||(16142293-16142395)
chr2 (185-269)||(44421233-44421317)
chr2 (215-286)||(22053192-22053262)
chr2 (185-286)||(16143487-16143588)
chr2 (197-286)||(38729965-38730054)
chr2 (183-269)||(44419889-44419975)
chr2 (213-286)||(1840224-1840297)
chr2 (215-286)||(1841676-1841747)
chr2 (215-286)||(13947814-13947885)
chr2 (215-286)||(14089003-14089074)
chr2 (199-286)||(38728251-38728338)
chr2 (199-285)||(472788-472874)
chr2 (215-285)||(44097272-44097342)
chr2 (213-286)||(15346931-15347004)
chr2 (216-285)||(28563444-28563513)
chr2 (215-282)||(22060400-22060467)
chr2 (250-285)||(35588195-35588230)
chr2 (191-286)||(44464987-44465082)
chr2 (216-286)||(40304684-40304754)
chr2 (216-286)||(45492954-45493024)
chr2 (216-286)||(45500696-45500766)
chr2 (185-286)||(44463631-44463732)
[»] scaffold1176 (1 HSPs)
scaffold1176 (215-286)||(2118-2189)
[»] chr1 (25 HSPs)
chr1 (183-285)||(7185745-7185847)
chr1 (184-286)||(50316940-50317042)
chr1 (184-286)||(24438837-24438939)
chr1 (185-285)||(35973165-35973265)
chr1 (183-286)||(13211001-13211104)
chr1 (215-286)||(19057788-19057859)
chr1 (215-286)||(28919150-28919221)
chr1 (215-286)||(28920576-28920647)
chr1 (215-286)||(7655185-7655256)
chr1 (215-286)||(16673177-16673248)
chr1 (185-286)||(13209642-13209743)
chr1 (215-286)||(16672722-16672793)
chr1 (215-286)||(33257948-33258018)
chr1 (215-286)||(33278120-33278190)
chr1 (215-286)||(36146833-36146904)
chr1 (211-286)||(41668340-41668415)
chr1 (216-286)||(36145411-36145481)
chr1 (217-286)||(19249387-19249455)
chr1 (198-286)||(22684054-22684142)
chr1 (215-286)||(18309152-18309223)
chr1 (197-268)||(33981645-33981716)
chr1 (216-282)||(33259294-33259360)
chr1 (216-282)||(33279453-33279519)
chr1 (215-255)||(1969645-1969685)
chr1 (218-286)||(33981571-33981639)
[»] chr6 (13 HSPs)
chr6 (215-286)||(8745499-8745570)
chr6 (215-285)||(10707740-10707807)
chr6 (215-286)||(2956156-2956227)
chr6 (215-286)||(19082733-19082804)
chr6 (219-286)||(19084045-19084112)
chr6 (215-286)||(1258360-1258432)
chr6 (246-286)||(10699891-10699931)
chr6 (187-286)||(1443484-1443583)
chr6 (214-269)||(7678563-7678618)
chr6 (215-286)||(8752721-8752792)
chr6 (239-286)||(10699297-10699344)
chr6 (216-286)||(4296328-4296398)
chr6 (216-285)||(1256782-1256851)
[»] chr4 (23 HSPs)
chr4 (215-285)||(18597700-18597770)
chr4 (185-286)||(54536587-54536688)
chr4 (215-286)||(19994565-19994636)
chr4 (215-286)||(19995975-19996046)
chr4 (183-286)||(42889700-42889802)
chr4 (215-286)||(44251672-44251743)
chr4 (215-286)||(53355167-53355238)
chr4 (206-286)||(22307738-22307818)
chr4 (215-282)||(10338089-10338156)
chr4 (215-286)||(44253113-44253184)
chr4 (215-286)||(48713383-48713454)
chr4 (215-286)||(54121894-54121965)
chr4 (215-286)||(55948874-55948945)
chr4 (197-286)||(10337171-10337259)
chr4 (206-285)||(22309050-22309129)
chr4 (215-286)||(25351721-25351791)
chr4 (215-286)||(32082554-32082625)
chr4 (215-286)||(42977265-42977336)
chr4 (215-286)||(54123466-54123537)
chr4 (183-286)||(54535045-54535148)
chr4 (216-286)||(3068991-3069061)
chr4 (215-285)||(33607536-33607606)
chr4 (249-286)||(24919119-24919156)
[»] scaffold1118 (1 HSPs)
scaffold1118 (216-282)||(2483-2549)
[»] scaffold0672 (1 HSPs)
scaffold0672 (240-286)||(475-521)
[»] scaffold0280 (1 HSPs)
scaffold0280 (215-285)||(12200-12270)


Alignment Details
Target: chr7 (Bit Score: 123; Significance: 4e-63; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 120 - 286
Target Start/End: Original strand, 37133475 - 37133641
Alignment:
Q  120 tccccataatatagtcagacttcatctgtcacaacaaataagtgttttttgccacgccatccttcgccacgtcagctaccgttagacacataggtgtttt 219  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||    
T  37133475 tccccataatatagtcaggcttcatctgtcacaacacataagtgttttttgccatgtcatccttcgccacgtcagcgaccgttagacacataggtgtttt 37133574  T
Q  220 tgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
    |||||| ||| |||| || ||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  37133575 tgtaacggaaattgaagggaggaacgaaaaccaaaacgtttataacttccgggggttgttttagaac 37133641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 126 - 286
Target Start/End: Complemental strand, 46245349 - 46245189
Alignment:
Q  126 taatatagtcagacttcatctgtcacaacaaataagtgttttttgccacgccatccttcgccacgtcagctaccgttagacacataggtgtttttgtaac 225  Q
    ||||||||||||   ||||||||||| ||| ||||| ||||||||||||  ||||||| |||||||||||  ||||||||||   ||| |||||||||||    
T  46245349 taatatagtcagggatcatctgtcacgacacataagcgttttttgccacatcatcctttgccacgtcagccgccgttagacagcgaggcgtttttgtaac 46245250  T
Q  226 agaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
     ||||||||||| ||||||||||| ||||| |||  |||||||| ||||||||||||||||    
T  46245249 ggaagttgacgggagggacgaaaatcaaaaagttattaacttacaggggttgttttagaac 46245189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 141 - 286
Target Start/End: Complemental strand, 37132047 - 37131902
Alignment:
Q  141 tcatctgtcacaacaaataagtgttttttgccacgccatccttcgccacgtcagctaccgttagacacataggtgttttt-gtaacagaagttgacggaa 239  Q
    ||||||||||| ||| ||||| |||||| |||| | ||||||||||||||||| |  ||||||||||| |||| |||||| ||||| |||||||||||||    
T  37132047 tcatctgtcacgacacataagcgttttt-gccatgtcatccttcgccacgtcaacggccgttagacacgtaggcgttttttgtaacggaagttgacggaa 37131949  T
Q  240 gggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
    ||||||||||||||||||||||||||||||  | ||| |||||||||    
T  37131948 gggacgaaaaccaaaacgtttataacttacatgagttattttagaac 37131902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 141 - 285
Target Start/End: Complemental strand, 15135590 - 15135446
Alignment:
Q  141 tcatctgtcacaacaaataagtgttttttgccacgccatccttcgccacgtcagctaccgttagacacataggtgtttttgtaacagaagttgacggaag 240  Q
    |||| |||||| ||| |||||  |||||||||||  |||||||||||||||||||  ||||||||||| | || |||||||||||| |||||||||| ||    
T  15135590 tcatttgtcacgacacataagacttttttgccacatcatccttcgccacgtcagccgccgttagacactttggcgtttttgtaacaaaagttgacgggag 15135491  T
Q  241 ggacgaaaaccaaaacgtttataacttacgggggttgttttagaa 285  Q
    ||||||||| ||||| |||  |||||| | |||||||||||||||    
T  15135490 ggacgaaaatcaaaaagttattaacttgcaggggttgttttagaa 15135446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 184 - 286
Target Start/End: Original strand, 12180529 - 12180631
Alignment:
Q  184 cgccacgtcagctaccgttagacacataggtgtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttag 283  Q
    |||||||||||  ||||||||||||||    |||||||||||||| | |||||| ||||||||||| |||||||||| |||||||| ||| |||||||||    
T  12180529 cgccacgtcagtcaccgttagacacatcaacgtttttgtaacagatgctgacgggagggacgaaaatcaaaacgtttgtaacttacagggtttgttttag 12180628  T
Q  284 aac 286  Q
    |||    
T  12180629 aac 12180631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 177 - 286
Target Start/End: Complemental strand, 14774688 - 14774579
Alignment:
Q  177 catccttcgccacgtcagctaccgttagacacataggtgtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggtt 276  Q
    |||||||||||| |||||| ||  |||||||| | || ||||||||||| ||||||||||| ||||||||||| ||||| |||  |||||| | ||||||    
T  14774688 catccttcgccatgtcagccactattagacactttggcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttgcaggggtt 14774589  T
Q  277 gttttagaac 286  Q
    ||||||||||    
T  14774588 gttttagaac 14774579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 177 - 286
Target Start/End: Complemental strand, 15225141 - 15225032
Alignment:
Q  177 catccttcgccacgtcagctaccgttagacacataggtgtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggtt 276  Q
    |||||||||||| |||||| ||  |||||||| | || ||||||||||| ||||||||||| ||||||||||| ||||| |||  |||||| | ||||||    
T  15225141 catccttcgccatgtcagccactattagacactttggcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttgcaggggtt 15225042  T
Q  277 gttttagaac 286  Q
    ||||||||||    
T  15225041 gttttagaac 15225032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 141 - 255
Target Start/End: Complemental strand, 11747604 - 11747490
Alignment:
Q  141 tcatctgtcacaacaaataagtgttttttgccacgccatccttcgccacgtcagctaccgttagacacataggtgtttttgtaacagaagttgacggaag 240  Q
    ||||||||||| ||| ||||| | ||||||||||  |||| ||||||||||||||  ||||||||||| | || ||||||||||| ||||| ||||| ||    
T  11747604 tcatctgtcacgacacataagcggtttttgccacatcatcattcgccacgtcagccgccgttagacactttggcgtttttgtaacggaagtagacgggag 11747505  T
Q  241 ggacgaaaaccaaaa 255  Q
    ||||| ||| |||||    
T  11747504 ggacggaaatcaaaa 11747490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 215 - 286
Target Start/End: Complemental strand, 45276547 - 45276476
Alignment:
Q  215 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
    ||||||||||| ||||||||||| ||||||||||| ||||| |||  |||||||| ||||||||||||||||    
T  45276547 gtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacaggggttgttttagaac 45276476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 184 - 286
Target Start/End: Original strand, 11671176 - 11671278
Alignment:
Q  184 cgccacgtcagctaccgttagacacataggtgtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttag 283  Q
    |||||||||||  ||||||||||||||  |  ||||||||||||| | |||||  ||||||||||| |||||| ||| |||||||| ||| |||||||||    
T  11671176 cgccacgtcagtcaccgttagacacatcagcatttttgtaacagatgctgacgagagggacgaaaatcaaaacatttgtaacttacagggtttgttttag 11671275  T
Q  284 aac 286  Q
    |||    
T  11671276 aac 11671278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 215 - 286
Target Start/End: Original strand, 8231555 - 8231626
Alignment:
Q  215 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
    ||||||||||| ||||||||||| || |||||||| ||||| |||  |||||||| ||||||||||||||||    
T  8231555 gtttttgtaacggaagttgacgggagtgacgaaaatcaaaaagttattaacttacaggggttgttttagaac 8231626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 286
Target Start/End: Complemental strand, 12178651 - 12178550
Alignment:
Q  185 gccacgtcagctaccgttagacacataggtgtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttaga 284  Q
    |||||| |||| ||||||||||||||  | |||||| ||||||||||| |||  |||||| |||||||||| ||| | ||||||| | | ||||||||||    
T  12178651 gccacgccagccaccgttagacacatcagcgtttttttaacagaagttaacgttagggactaaaaccaaaaagttaacaacttacagagtttgttttaga 12178552  T
Q  285 ac 286  Q
    ||    
T  12178551 ac 12178550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 206 - 286
Target Start/End: Original strand, 13420198 - 13420278
Alignment:
Q  206 cacataggtgtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
    |||||||  ||||||||||| ||   |||||| |||||| |||||||||| | ||||||||||| ||||||||||||||||    
T  13420198 cacatagacgtttttgtaacggattatgacggcagggactaaaaccaaaatgcttataacttacaggggttgttttagaac 13420278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 206 - 286
Target Start/End: Original strand, 37350113 - 37350193
Alignment:
Q  206 cacataggtgtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
    |||||||  ||||||||||||||   |||||| |||||| |||||||||| | ||||||||||  ||||||||||||||||    
T  37350113 cacatagacgtttttgtaacagattatgacggcagggactaaaaccaaaatgcttataacttataggggttgttttagaac 37350193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 286
Target Start/End: Original strand, 4675718 - 4675789
Alignment:
Q  215 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
    ||||||||||| ||||||||||| ||||||||||| ||||| |||  |||||||  | ||||||||||||||    
T  4675718 gtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttatagtggttgttttagaac 4675789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 282
Target Start/End: Original strand, 21716540 - 21716607
Alignment:
Q  215 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgtttta 282  Q
    ||||||||||| ||||||||||| ||||||||||| ||||| |||  |||||||| ||| ||||||||    
T  21716540 gtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacagggattgtttta 21716607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 286
Target Start/End: Complemental strand, 31392196 - 31392125
Alignment:
Q  215 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
    ||||||||||| ||||||| ||| ||||||||||| ||||| |||  |||||||  ||||||||||||||||    
T  31392196 gtttttgtaacggaagttggcgggagggacgaaaatcaaaaagttattaacttataggggttgttttagaac 31392125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 282
Target Start/End: Original strand, 31393580 - 31393647
Alignment:
Q  215 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgtttta 282  Q
    ||||||||||| ||||||||||| |||||||||||  |||| |||  |||||||| ||||||||||||    
T  31393580 gtttttgtaacggaagttgacgggagggacgaaaattaaaaagttattaacttacaggggttgtttta 31393647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 286
Target Start/End: Complemental strand, 32881254 - 32881183
Alignment:
Q  215 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
    ||||||||||| |||||||| || ||||||||||| ||||| |||  |||||||  ||||||||||||||||    
T  32881254 gtttttgtaacggaagttgatgggagggacgaaaatcaaaaagttattaacttataggggttgttttagaac 32881183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 286
Target Start/End: Original strand, 32882636 - 32882707
Alignment:
Q  215 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
    ||||||||||| ||||||||||||||||||||||| ||||| ||   |||||||   |||||||||||||||    
T  32882636 gtttttgtaacggaagttgacggaagggacgaaaatcaaaaagtcattaacttataagggttgttttagaac 32882707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 286
Target Start/End: Complemental strand, 40028595 - 40028524
Alignment:
Q  215 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
    ||||||||||| ||||||||||| |||||||||||  |||| |||  |||||||  ||||||||||||||||    
T  40028595 gtttttgtaacggaagttgacgggagggacgaaaataaaaaagttattaacttataggggttgttttagaac 40028524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 286
Target Start/End: Original strand, 40029950 - 40030021
Alignment:
Q  215 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
    ||||||||||| ||||||||||| ||||||||||| ||||| |||  |||||||  | ||||||||||||||    
T  40029950 gtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttactaacttatagaggttgttttagaac 40030021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 282
Target Start/End: Original strand, 45277888 - 45277955
Alignment:
Q  215 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgtttta 282  Q
    ||||||||||| ||||||||||| ||||||||||| ||||| |||  |||||||  ||||||||||||    
T  45277888 gtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttataggggttgtttta 45277955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 285
Target Start/End: Original strand, 30792751 - 30792821
Alignment:
Q  215 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaa 285  Q
    |||||||||||| |  ||||||| ||||||||||| ||||| |||  |||||||| |||||||||||||||    
T  30792751 gtttttgtaacaaagtttgacgggagggacgaaaagcaaaaagttattaacttacaggggttgttttagaa 30792821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 286
Target Start/End: Complemental strand, 37348872 - 37348802
Alignment:
Q  216 tttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
    |||||||||||||   |||||| | |||| ||||||||||||||||||||||||  || ||||||||||||    
T  37348872 tttttgtaacagataatgacggcatggactaaaaccaaaacgtttataacttacaaggattgttttagaac 37348802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 286
Target Start/End: Original strand, 21017733 - 21017773
Alignment:
Q  246 aaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
    |||||||||| ||||||||||||| ||||||||||||||||    
T  21017733 aaaaccaaaatgtttataacttacaggggttgttttagaac 21017773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 215 - 286
Target Start/End: Complemental strand, 8230208 - 8230137
Alignment:
Q  215 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
    ||||||||||| ||||||||||  |||||||||||  |||| |||  |||||||  ||||||||||||||||    
T  8230208 gtttttgtaacggaagttgacgagagggacgaaaataaaaaagttattaacttataggggttgttttagaac 8230137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 215 - 282
Target Start/End: Complemental strand, 21715210 - 21715143
Alignment:
Q  215 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgtttta 282  Q
    ||||||||||| ||||||||||| ||||||||||| ||||| |||  |||||||  ||| ||||||||    
T  21715210 gtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttatagggattgtttta 21715143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 286
Target Start/End: Original strand, 46246497 - 46246567
Alignment:
Q  216 tttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
    ||||| |||||||||||||||| ||||||||||  ||||| |||   ||||||| ||| ||||||||||||    
T  46246497 tttttttaacagaagttgacggtagggacgaaattcaaaaagttatcaacttacagggtttgttttagaac 46246567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 45
Target Start/End: Original strand, 37133396 - 37133425
Alignment:
Q  16 agagagagaggaagaagatgaaaataatgg 45  Q
    ||||||||||||||||||||||||||||||    
T  37133396 agagagagaggaagaagatgaaaataatgg 37133425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 283
Target Start/End: Original strand, 9532535 - 9532603
Alignment:
Q  215 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttag 283  Q
    ||||||||||||||  |||| || ||||||||||| ||||| |||  ||| |||| |||||||||||||    
T  9532535 gtttttgtaacagagtttgatgggagggacgaaaagcaaaaagttattaatttactggggttgttttag 9532603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 126 - 286
Target Start/End: Original strand, 40499084 - 40499244
Alignment:
Q  126 taatatagtcagacttcatctgtcacaacaaataagtgttttttgccacgccatccttcgccacgtcagctaccgttagacacataggtgtttttgtaac 225  Q
    ||||||||||||   ||||||||||| ||| ||||| ||||||||||||  ||||||| |||||||||||  ||||||||||   ||| |||||||||||    
T  40499084 taatatagtcagggatcatctgtcacgacacataagcgttttttgccacatcatcctttgccacgtcagccgccgttagacagcgaggcgtttttgtaac 40499183  T
Q  226 agaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
     ||||||||||| ||||||||||| ||||| |||  |||||||| ||||||||||||||||    
T  40499184 ggaagttgacgggagggacgaaaatcaaaaagttattaacttaccggggttgttttagaac 40499244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 126 - 286
Target Start/End: Original strand, 31796666 - 31796826
Alignment:
Q  126 taatatagtcagacttcatctgtcacaacaaataagtgttttttgccacgccatccttcgccacgtcagctaccgttagacacataggtgtttttgtaac 225  Q
    ||||||||||||   ||||||||||| ||| || || ||||||||||||  ||||||| |||| |||||   ||||||||||   ||| |||||||||||    
T  31796666 taatatagtcagggatcatctgtcacgacacatcagcgttttttgccacatcatcctttgccatgtcagtcgccgttagacagtgaggcgtttttgtaac 31796765  T
Q  226 agaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
     ||||||||||| ||||||||||| ||||| |||  |||||||| ||||||||||||||||    
T  31796766 ggaagttgacgggagggacgaaaatcaaaaagttattaacttacaggggttgttttagaac 31796826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 126 - 286
Target Start/End: Original strand, 41083103 - 41083262
Alignment:
Q  126 taatatagtcagacttcatctgtcacaacaaataagtgttttttgccacgccatccttcgccacgtcagctaccgttagacacataggtgtttttgtaac 225  Q
    ||||||||||||   ||||||||||| ||| ||||| ||||||||||||  ||||||| |||| |||||   |||| |||||   ||| |||||||||||    
T  41083103 taatatagtcagggatcatctgtcacgacacataagcgttttttgccacatcatcctttgccatgtcagtcgccgt-agacagtgaggcgtttttgtaac 41083201  T
Q  226 agaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
     ||||||||||| ||||||||||| ||||| |||  |||||||| ||||||||||||||||    
T  41083202 ggaagttgacgggagggacgaaaatcaaaaagttattaacttacaggggttgttttagaac 41083262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 126 - 286
Target Start/End: Original strand, 48568362 - 48568522
Alignment:
Q  126 taatatagtcagacttcatctgtcacaacaaataagtgttttttgccacgccatccttcgccacgtcagctaccgttagacacataggtgtttttgtaac 225  Q
    ||||||||||||   ||||||||||| ||| |||||  |||||||||||  ||||||| |||||| || |   |||||||||   ||| |||||||||||    
T  48568362 taatatagtcagggatcatctgtcacgacacataagaattttttgccacatcatcctttgccacgacatccgtcgttagacagggaggcgtttttgtaac 48568461  T
Q  226 agaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
     ||||||||||| ||||||||||| ||||| |||  |||||||| ||||||||||||||||    
T  48568462 ggaagttgacgggagggacgaaaatcaaaaagttattaacttacaggggttgttttagaac 48568522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 216 - 286
Target Start/End: Complemental strand, 22942475 - 22942405
Alignment:
Q  216 tttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
    ||||||||||||| | ||||||| ||||| ||||||||||||||||||||||||   ||||||||||||||    
T  22942475 tttttgtaacagatgatgacggatgggaccaaaaccaaaacgtttataacttacataggttgttttagaac 22942405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 190 - 286
Target Start/End: Complemental strand, 30700459 - 30700363
Alignment:
Q  190 gtcagctaccgttagacacataggtgtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
    ||||||| |||| ||||||||| |  ||||||||||||| | |||||| |||||| |||| ||||| ||||||||||||| |||  |||||||||||    
T  30700459 gtcagctgccgtcagacacataagcatttttgtaacagatgctgacggcagggaccaaaagcaaaatgtttataacttacagggtgtgttttagaac 30700363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 215 - 286
Target Start/End: Original strand, 33734423 - 33734494
Alignment:
Q  215 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
    ||||||||||| |||||||| || ||||||||||| ||||| |||  |||||||| ||||||||||||||||    
T  33734423 gtttttgtaacggaagttgatgggagggacgaaaatcaaaaagttattaacttacaggggttgttttagaac 33734494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 215 - 286
Target Start/End: Complemental strand, 53528108 - 53528037
Alignment:
Q  215 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
    ||||||||||| ||||||||||| ||||||||||| ||||| |||  |||||||| || |||||||||||||    
T  53528108 gtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacaggagttgttttagaac 53528037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 286
Target Start/End: Complemental strand, 31657092 - 31657021
Alignment:
Q  215 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
    ||||||||||||||  ||||||| ||||||||||| ||||| |||  |||||||| ||| ||||||||||||    
T  31657092 gtttttgtaacagagtttgacgggagggacgaaaagcaaaaagttattaacttacagggattgttttagaac 31657021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 286
Target Start/End: Complemental strand, 33733103 - 33733032
Alignment:
Q  215 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
    ||||||||||| ||||||||||| | ||||||||| ||||| |||  |||||||  ||||||||||||||||    
T  33733103 gtttttgtaacggaagttgacgggaaggacgaaaatcaaaaagttattaacttataggggttgttttagaac 33733032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 286
Target Start/End: Complemental strand, 31795510 - 31795440
Alignment:
Q  216 tttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
    ||||| |||||||||||||||| ||||||||||  ||||| |||   ||||||| ||| ||||||||||||    
T  31795510 tttttttaacagaagttgacggtagggacgaaattcaaaaagttatcaacttacagggtttgttttagaac 31795440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 286
Target Start/End: Complemental strand, 41081939 - 41081869
Alignment:
Q  216 tttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
    ||||| |||||||||||||||| ||||||||||  ||||| |||   ||||||| ||| ||||||||||||    
T  41081939 tttttttaacagaagttgacggtagggacgaaattcaaaaagttatcaacttacagggtttgttttagaac 41081869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 286
Target Start/End: Complemental strand, 48567133 - 48567063
Alignment:
Q  216 tttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
    ||||| |||||||||||||||| ||||||||||  ||||| |||   ||||||| ||| ||||||||||||    
T  48567133 tttttttaacagaagttgacggtagggacgaaattcaaaaagttatcaacttacagggtttgttttagaac 48567063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 286
Target Start/End: Original strand, 53529456 - 53529526
Alignment:
Q  216 tttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
    |||||||||| ||||||||||| ||||||||||| ||||| |||  |||||||  |||| | |||||||||    
T  53529456 tttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttataggggctattttagaac 53529526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 286
Target Start/End: Complemental strand, 41880036 - 41879991
Alignment:
Q  241 ggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
    ||||||||| |||||||||||||||||||  || ||||||||||||    
T  41880036 ggacgaaaatcaaaacgtttataacttacaaggtttgttttagaac 41879991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 269
Target Start/End: Original strand, 30701732 - 30701816
Alignment:
Q  185 gccacgtcagctaccgttagacacataggtgtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttac 269  Q
    ||||||||||||  ||||||||||||| | |||||||||||| | | |||||  |||||| |||| || || | |||||||||||    
T  30701732 gccacgtcagctgtcgttagacacataagcgtttttgtaacaaatgatgacgttagggaccaaaagcataaggcttataacttac 30701816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 6e-31; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 126 - 286
Target Start/End: Complemental strand, 38624943 - 38624783
Alignment:
Q  126 taatatagtcagacttcatctgtcacaacaaataagtgttttttgccacgccatccttcgccacgtcagctaccgttagacacataggtgtttttgtaac 225  Q
    |||||||||||||  ||||||||||| ||| ||||| ||||||||||||  ||||||| ||||| |||||  ||||||||||   ||| |||||||||||    
T  38624943 taatatagtcagagatcatctgtcacgacacataagcgttttttgccacatcatcctttgccacatcagccgccgttagacagcgaggcgtttttgtaac 38624844  T
Q  226 agaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
     ||||||||||| ||||||||||| ||||| |||  |||||||  ||||||||||||||||    
T  38624843 ggaagttgacgggagggacgaaaatcaaaaagttattaacttataggggttgttttagaac 38624783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 126 - 286
Target Start/End: Original strand, 11772532 - 11772692
Alignment:
Q  126 taatatagtcagacttcatctgtcacaacaaataagtgttttttgccacgccatccttcgccacgtcagctaccgttagacacataggtgtttttgtaac 225  Q
    ||||||||||||   ||||||||||| ||| ||||| ||||||||||||  ||||||| |||||||||||   |||||||||   ||||| |||||||||    
T  11772532 taatatagtcagggatcatctgtcacgacacataagcgttttttgccacatcatcctttgccacgtcagccgtcgttagacaatgaggtgcttttgtaac 11772631  T
Q  226 agaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
     ||||||||| | ||||||||||| ||||| |||  ||||||||  |||||||||||||||    
T  11772632 ggaagttgacaggagggacgaaaatcaaaaagttattaacttacaagggttgttttagaac 11772692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 177 - 286
Target Start/End: Original strand, 17554885 - 17554995
Alignment:
Q  177 catccttcgccacgt-cagctaccgttagacacataggtgtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggt 275  Q
    ||||||| ||||||| ||||||| ||||||||| | ||  |||||||||| ||||||||||| ||||||||||| ||||| |||  |||||| | |||||    
T  17554885 catccttagccacgttcagctactgttagacactttggcatttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttgcaggggt 17554984  T
Q  276 tgttttagaac 286  Q
    |||||||||||    
T  17554985 tgttttagaac 17554995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 183 - 286
Target Start/End: Complemental strand, 16308736 - 16308633
Alignment:
Q  183 tcgccacgtcagctaccgttagacacataggtgtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgtttta 282  Q
    ||||||||||||||  ||||||||||||| | |||||||||||||| | |||||| |||||| |||| || || | ||||||||||| |||  |||||||    
T  16308736 tcgccacgtcagctgtcgttagacacataagcgtttttgtaacagatgatgacggtagggaccaaaagcacaaggcttataacttacagggtctgtttta 16308637  T
Q  283 gaac 286  Q
    ||||    
T  16308636 gaac 16308633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 190 - 286
Target Start/End: Original strand, 27756681 - 27756777
Alignment:
Q  190 gtcagctaccgttagacacataggtgtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
    ||||||| |||| ||||||||| | |||||||||||| | | |||||| |||||| |||| ||||| |||||||| |||| ||| ||||||||||||    
T  27756681 gtcagctgccgtcagacacataagcgtttttgtaacaaatgctgacggcagggaccaaaagcaaaatgtttataatttacagggtttgttttagaac 27756777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 215 - 286
Target Start/End: Original strand, 1418857 - 1418928
Alignment:
Q  215 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
    ||||||||||| ||||||||||| ||||||||||| ||||| |||  |||||||  ||||||||||||||||    
T  1418857 gtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttataggggttgttttagaac 1418928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 217 - 286
Target Start/End: Original strand, 30333930 - 30333999
Alignment:
Q  217 ttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
    ||||||||  ||||||||||| ||||||||||| ||||| |||  |||||||| ||||||||||||||||    
T  30333930 ttttgtaatggaagttgacgggagggacgaaaatcaaaaagttattaacttacaggggttgttttagaac 30333999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 190 - 286
Target Start/End: Original strand, 16309995 - 16310091
Alignment:
Q  190 gtcagctaccgttagacacataggtgtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
    ||||||| |||| | ||||||| | |||||||||||||| | |||||| |||||| |||| ||||| |||||||||||||  ||  |||||||||||    
T  16309995 gtcagcttccgtcatacacataagcgtttttgtaacagatgctgacggcagggaccaaaagcaaaatgtttataacttacaaggtctgttttagaac 16310091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 286
Target Start/End: Original strand, 25916199 - 25916270
Alignment:
Q  215 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
    ||||||||||| ||||||||||| |||||||||||  |||| |||  |||||||  ||||||||||||||||    
T  25916199 gtttttgtaacggaagttgacgggagggacgaaaattaaaaagttattaacttataggggttgttttagaac 25916270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 286
Target Start/End: Complemental strand, 30332421 - 30332350
Alignment:
Q  215 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
    ||||||||||| ||||||||| | ||||||||||| ||||| |||  |||||||  ||||||||||||||||    
T  30332421 gtttttgtaacggaagttgacaggagggacgaaaatcaaaaagttattaacttataggggttgttttagaac 30332350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 286
Target Start/End: Complemental strand, 39101853 - 39101782
Alignment:
Q  215 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
    ||||||||||||||  ||||||| ||||||||||| ||||| |||  |||| ||| ||||||||||||||||    
T  39101853 gtttttgtaacagagtttgacgggagggacgaaaagcaaaaagttattaacatacaggggttgttttagaac 39101782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 286
Target Start/End: Complemental strand, 1417545 - 1417477
Alignment:
Q  219 ttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttac-gggggttgttttagaac 286  Q
    ||||||| ||||||||||| |||||||||||  |||| |||  |||||||| |||||||||||||||||    
T  1417545 ttgtaacggaagttgacgggagggacgaaaataaaaaagttattaacttacagggggttgttttagaac 1417477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 286
Target Start/End: Complemental strand, 28803762 - 28803722
Alignment:
Q  246 aaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
    |||||||||||||||||||||||||| | ||||||||||||    
T  28803762 aaaaccaaaacgtttataacttacggtgtttgttttagaac 28803722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 215 - 286
Target Start/End: Complemental strand, 8872657 - 8872587
Alignment:
Q  215 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
    ||||||||||||||  |||||||  |||||||||| ||||| |||  ||||||| |||||||||||||||||    
T  8872657 gtttttgtaacagagtttgacggg-gggacgaaaagcaaaaagttattaacttatgggggttgttttagaac 8872587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 215 - 282
Target Start/End: Complemental strand, 25914628 - 25914561
Alignment:
Q  215 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgtttta 282  Q
    ||||||||||| ||||||||||| |||||||||||  |||| |||  ||||| || ||||||||||||    
T  25914628 gtttttgtaacggaagttgacgggagggacgaaaataaaaaagttattaactaacaggggttgtttta 25914561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 215 - 286
Target Start/End: Complemental strand, 28592215 - 28592145
Alignment:
Q  215 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
    |||||||||||||||||| |||  ||| || ||||||||||| ||||||||||||   ||||||||||||||    
T  28592215 gtttttgtaacagaagttaacgttaggaactaaaaccaaaacatttataacttac-acggttgttttagaac 28592145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 286
Target Start/End: Original strand, 8874196 - 8874266
Alignment:
Q  216 tttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
    |||||||||||||  ||||||  |||||| |||| ||||| |||  |||||||| ||||||||||||||||    
T  8874196 tttttgtaacagagtttgacgagagggacaaaaagcaaaaagttattaacttacaggggttgttttagaac 8874266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 286
Target Start/End: Complemental strand, 36619682 - 36619612
Alignment:
Q  216 tttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
    |||||||||||||  ||||||| ||||||||||| ||||| | |  |||||||  ||||||||||||||||    
T  36619682 tttttgtaacagagtttgacgggagggacgaaaagcaaaaagctattaacttataggggttgttttagaac 36619612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 286
Target Start/End: Original strand, 38626092 - 38626162
Alignment:
Q  216 tttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
    ||||| |||||||||||||||| ||||||||||  ||||| |||   ||||||| ||| ||||||||||||    
T  38626092 tttttttaacagaagttgacggtagggacgaaattcaaaaagttatcaacttacagggtttgttttagaac 38626162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 126 - 285
Target Start/End: Original strand, 1650041 - 1650200
Alignment:
Q  126 taatatagtcagacttcatctgtcacaacaaataagtgttttttgccacgccatccttcgccacgtcagctaccgttagacacataggtgtttttgtaac 225  Q
    ||||||||| |||  ||||||||||| ||| |||| ||| |||||||||  ||| ||||||| | |||||  ||||||||||| ||||||||||||||||    
T  1650041 taatatagttagagatcatctgtcacgacacataaatgtattttgccacatcattcttcgccgcatcagcggccgttagacacgtaggtgtttttgtaac 1650140  T
Q  226 agaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaa 285  Q
    ||||||||||   |||||||||||||||||| ||||||||  ||  ||||||||||||||    
T  1650141 agaagttgacatgagggacgaaaaccaaaacatttataacaaacaagggttgttttagaa 1650200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 197 - 286
Target Start/End: Complemental strand, 2552562 - 2552473
Alignment:
Q  197 accgttagacacataggtgtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
    ||||| ||||||||  |||||||||||||| | |||||||| | ||||||||| |||||| ||| |||||||||||| ||||||||||||    
T  2552562 accgtcagacacatcagtgtttttgtaacaaatgttgacgggaaggacgaaaatcaaaacatttgtaacttacggggtttgttttagaac 2552473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 183 - 286
Target Start/End: Complemental strand, 5462104 - 5462001
Alignment:
Q  183 tcgccacgtcagctaccgttagacacataggtgtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgtttta 282  Q
    |||||| ||||||| |||| | ||||||| | |||||||||||||| | |||||| |||||| |||| ||||| |||||||| |||| |||  |||||||    
T  5462104 tcgccatgtcagctgccgtcatacacataagcgtttttgtaacagatgctgacggcagggaccaaaagcaaaatgtttataaattacagggtctgtttta 5462005  T
Q  283 gaac 286  Q
    ||||    
T  5462004 gaac 5462001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 206 - 285
Target Start/End: Original strand, 39885988 - 39886067
Alignment:
Q  206 cacataggtgtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaa 285  Q
    |||||||  ||||||||||||||   |||||| |||||| |||||||||| | ||||||||||| |||||||||||||||    
T  39885988 cacatagacgtttttgtaacagattatgacggcagggactaaaaccaaaatgcttataacttacaggggttgttttagaa 39886067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 286
Target Start/End: Complemental strand, 33294078 - 33294007
Alignment:
Q  215 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
    ||||||||||| ||||||||||| ||||||||||| ||||| |||  ||| |||  ||||||||||||||||    
T  33294078 gtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaatttataggggttgttttagaac 33294007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 286
Target Start/End: Original strand, 33295367 - 33295438
Alignment:
Q  215 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
    ||||||||||| ||||||||||| ||||||| ||| ||||| |||  ||||||||  |||||||||||||||    
T  33295367 gtttttgtaacggaagttgacgggagggacggaaatcaaaaagttattaacttacaagggttgttttagaac 33295438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 249
Target Start/End: Original strand, 15279522 - 15279588
Alignment:
Q  183 tcgccacgtcagctaccgttagacacataggtgtttttgtaacagaagttgacggaagggacgaaaa 249  Q
    |||||||||||||| |||||||||||||| |  ||||||||||||| | |||||| |||||| ||||    
T  15279522 tcgccacgtcagctgccgttagacacataagcatttttgtaacagatgatgacggtagggaccaaaa 15279588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 249
Target Start/End: Original strand, 15459891 - 15459957
Alignment:
Q  183 tcgccacgtcagctaccgttagacacataggtgtttttgtaacagaagttgacggaagggacgaaaa 249  Q
    |||||||||||||| |||||||||||||| |  ||||||||||||| | |||||| |||||| ||||    
T  15459891 tcgccacgtcagctgccgttagacacataagcatttttgtaacagatgatgacggtagggaccaaaa 15459957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 183 - 286
Target Start/End: Original strand, 3157926 - 3158029
Alignment:
Q  183 tcgccacgtcagctaccgttagacacataggtgtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgtttta 282  Q
    |||||| |||||||  ||| ||||||| | | |||| ||||||||| | |||||| ||||||  ||| ||||| ||||||||||||| |||  |||||||    
T  3157926 tcgccatgtcagctgtcgtcagacacaaaagcgtttgtgtaacagatgctgacggcagggaccgaaagcaaaatgtttataacttacagggtctgtttta 3158025  T
Q  283 gaac 286  Q
    ||||    
T  3158026 gaac 3158029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 215 - 282
Target Start/End: Complemental strand, 25264478 - 25264411
Alignment:
Q  215 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgtttta 282  Q
    ||||||||||| ||||||||||| ||||||||||| ||||| |||  ||| |||| ||| ||||||||    
T  25264478 gtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaatttacagggattgtttta 25264411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 215 - 282
Target Start/End: Original strand, 25265826 - 25265893
Alignment:
Q  215 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgtttta 282  Q
    ||||||||||| ||||||||||| ||||||||||| ||||| |||  |||||||  ||| ||||||||    
T  25265826 gtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttatagggattgtttta 25265893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 286
Target Start/End: Complemental strand, 39884763 - 39884683
Alignment:
Q  206 cacataggtgtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
    |||||||  ||||||||||||||   ||| || |||||| |||||||||| | |||||||||||  ||||| |||||||||    
T  39884763 cacatagacgtttttgtaacagattatgaaggcagggactaaaaccaaaatgcttataacttacaagggttattttagaac 39884683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 126 - 286
Target Start/End: Complemental strand, 45499532 - 45499372
Alignment:
Q  126 taatatagtcagacttcatctgtcacaacaaataagtgttttttgccacgccatccttcgccacgtcagctaccgttagacacataggtgtttttgtaac 225  Q
    ||||||||||||   ||||||||||| ||| ||||| ||||||||||||  ||||||| |||| |||||   ||||||||||   ||| |||||||||||    
T  45499532 taatatagtcagggatcatctgtcacgacacataagcgttttttgccacatcatcctttgccatgtcagtcgccgttagacagtgaggcgtttttgtaac 45499433  T
Q  226 agaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
     ||||||||||| ||||||||||| ||||| |||  |||||||| ||||||||||||||||    
T  45499432 ggaagttgacgggagggacgaaaatcaaaaagttattaacttacaggggttgttttagaac 45499372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 126 - 286
Target Start/End: Complemental strand, 40303520 - 40303360
Alignment:
Q  126 taatatagtcagacttcatctgtcacaacaaataagtgttttttgccacgccatccttcgccacgtcagctaccgttagacacataggtgtttttgtaac 225  Q
    ||||||||||||   ||||||||||| ||| ||||| ||||||||||||  ||||||| |||| |||||   ||||||||||   ||| |||||||||||    
T  40303520 taatatagtcagggatcatctgtcacgacacataagcgttttttgccacatcatcctttgccatgtcagtcgccgttagacagtgaggcgtttttgtaac 40303421  T
Q  226 agaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
     ||||||||||| ||||||||||| ||||| |||  |||||||  ||||||||||||||||    
T  40303420 ggaagttgacgggagggacgaaaatcaaaaagttattaacttataggggttgttttagaac 40303360  T

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Target: chr2; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 184 - 286
Target Start/End: Complemental strand, 16142395 - 16142293
Alignment:
Q  184 cgccacgtcagctaccgttagacacataggtgtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttag 283  Q
    |||||||||||  ||||||||||||||  | |||||||||||||| | |||||| |||| |||||| |||||||||| |||||||| ||| |||||||||    
T  16142395 cgccacgtcagtcaccgttagacacatcagcgtttttgtaacagatgctgacgggagggccgaaaatcaaaacgtttgtaacttacagggtttgttttag 16142296  T
Q  284 aac 286  Q
    |||    
T  16142295 aac 16142293  T

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Target: chr2; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 185 - 269
Target Start/End: Original strand, 44421233 - 44421317
Alignment:
Q  185 gccacgtcagctaccgttagacacataggtgtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttac 269  Q
    |||||||||||||||||||||||||||   |||||||||||||| | |||||| || ||| |||| |||||||||||||||||||    
T  44421233 gccacgtcagctaccgttagacacataaacgtttttgtaacagatggtgacggcagagaccaaaagcaaaacgtttataacttac 44421317  T

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Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 215 - 286
Target Start/End: Complemental strand, 22053262 - 22053192
Alignment:
Q  215 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
    |||||||||||||||||| |||  |||||| |||||||||||||||||||||||| ||||||||||||||||    
T  22053262 gtttttgtaacagaagttaacgttagggactaaaaccaaaacgtttataacttac-ggggttgttttagaac 22053192  T

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Target: chr2; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 185 - 286
Target Start/End: Original strand, 16143487 - 16143588
Alignment:
Q  185 gccacgtcagctaccgttagacacataggtgtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttaga 284  Q
    ||||||||||| ||||||||||||||  | |||||| ||||||||||| |||  |||||| |||||||||| ||| | ||||||| ||| ||||||||||    
T  16143487 gccacgtcagccaccgttagacacatcagcgtttttttaacagaagttaacgttagggactaaaaccaaaaagttaacaacttacagggtttgttttaga 16143586  T
Q  285 ac 286  Q
    ||    
T  16143587 ac 16143588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 197 - 286
Target Start/End: Original strand, 38729965 - 38730054
Alignment:
Q  197 accgttagacacataggtgtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
    ||||||||||||||  |||||||||||||||| | | |||| ||||||||||| ||||| |||| |||||||| ||| ||||||||||||    
T  38729965 accgttagacacatcagtgtttttgtaacagaggctaacggcagggacgaaaatcaaaaggtttgtaacttacagggtttgttttagaac 38730054  T

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Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 183 - 269
Target Start/End: Complemental strand, 44419975 - 44419889
Alignment:
Q  183 tcgccacgtcagctaccgttagacacataggtgtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttac 269  Q
    |||||||||||||| |||||||||||||| | ||||||||||| || | |||||| | |||  |||| |||||||||||||||||||    
T  44419975 tcgccacgtcagctgccgttagacacataagcgtttttgtaacggatgatgacggcaaggatcaaaagcaaaacgtttataacttac 44419889  T

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Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 213 - 286
Target Start/End: Complemental strand, 1840297 - 1840224
Alignment:
Q  213 gtgtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
    ||||||||||||| ||||||||||| ||||||||||| ||||| |||  |||||||  ||||||||||||||||    
T  1840297 gtgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttataggggttgttttagaac 1840224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 215 - 286
Target Start/End: Original strand, 1841676 - 1841747
Alignment:
Q  215 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
    ||||||||||| ||||||||||| |||||||||||  |||| |||  |||||||| ||||||||||||||||    
T  1841676 gtttttgtaacggaagttgacgggagggacgaaaataaaaaagttattaacttacaggggttgttttagaac 1841747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 215 - 286
Target Start/End: Complemental strand, 13947885 - 13947814
Alignment:
Q  215 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
    ||||||||||| ||||||||||| ||||||||||| ||||| |||  |||||||  ||||||||||||||||    
T  13947885 gtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttataggggttgttttagaac 13947814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 215 - 286
Target Start/End: Complemental strand, 14089074 - 14089003
Alignment:
Q  215 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
    ||||||||||| ||||||||||| ||||||||||| ||||| |||  |||||||  ||||||||||||||||    
T  14089074 gtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttataggggttgttttagaac 14089003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 199 - 286
Target Start/End: Complemental strand, 38728338 - 38728251
Alignment:
Q  199 cgttagacacataggtgtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
    ||||||||||||  | ||||| ||||||||   |||||| ||||||||||| |||||||||| |||||| | ||| ||||||||||||    
T  38728338 cgttagacacatcagcgttttcgtaacagattatgacgggagggacgaaaatcaaaacgtttgtaacttgcagggtttgttttagaac 38728251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 285
Target Start/End: Complemental strand, 472874 - 472788
Alignment:
Q  199 cgttagacacataggtgtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaa 285  Q
    |||||||||| || |  ||||||||||||| | |||| | |||||| |||| |||||||||||||||||||  | ||||||||||||    
T  472874 cgttagacacgtaagcatttttgtaacagatgatgactgtagggaccaaaaacaaaacgtttataacttacatgagttgttttagaa 472788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 285
Target Start/End: Original strand, 44097272 - 44097342
Alignment:
Q  215 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaa 285  Q
    |||||||||||||||||| |||  |||||| |||||||||| ||| | ||||||| ||| |||||||||||    
T  44097272 gtttttgtaacagaagttaacgttagggactaaaaccaaaaggttaacaacttacagggtttgttttagaa 44097342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 213 - 286
Target Start/End: Complemental strand, 15347004 - 15346931
Alignment:
Q  213 gtgtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
    ||||||||||||||||   |||||| | |||| |||| |||||||||||||| ||||  |||||||||||||||    
T  15347004 gtgtttttgtaacagattatgacggcaaggaccaaaagcaaaacgtttataatttacaagggttgttttagaac 15346931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 216 - 285
Target Start/End: Complemental strand, 28563513 - 28563444
Alignment:
Q  216 tttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaa 285  Q
    |||||||||||||  ||||||| ||||||||||| ||||| |||  |||||||  |||||||||||||||    
T  28563513 tttttgtaacagagtttgacgggagggacgaaaagcaaaaagttattaacttataggggttgttttagaa 28563444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 215 - 282
Target Start/End: Original strand, 22060400 - 22060467
Alignment:
Q  215 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgtttta 282  Q
    |||||||||||| ||||| |||  ||| || |||||||||||| ||||||||| | ||||||||||||    
T  22060400 gtttttgtaacataagttaacgttaggaactaaaaccaaaacgcttataactttcaggggttgtttta 22060467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 250 - 285
Target Start/End: Complemental strand, 35588230 - 35588195
Alignment:
Q  250 ccaaaacgtttataacttacgggggttgttttagaa 285  Q
    ||||||||||||||||||||| ||||||||||||||    
T  35588230 ccaaaacgtttataacttacgagggttgttttagaa 35588195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 191 - 286
Target Start/End: Original strand, 44464987 - 44465082
Alignment:
Q  191 tcagctaccgttagacacataggtgtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
    |||||| |||| ||||| ||| | ||||||||||||||   |||||| |||||| |||| ||||| |||||||||||||  ||  |||||||||||    
T  44464987 tcagctgccgtcagacatataagcgtttttgtaacagatactgacggcagggaccaaaagcaaaatgtttataacttacaaggtctgttttagaac 44465082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 286
Target Start/End: Original strand, 40304684 - 40304754
Alignment:
Q  216 tttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
    ||||| |||||||||||||||| ||||||||||  ||||| |||   ||||||| ||| ||||||||||||    
T  40304684 tttttttaacagaagttgacggtagggacgaaattcaaaaagttatcaacttacagggtttgttttagaac 40304754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 286
Target Start/End: Original strand, 45492954 - 45493024
Alignment:
Q  216 tttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
    ||||| |||||||||||||||| ||||||||||  ||||| |||   ||||||| ||| ||||||||||||    
T  45492954 tttttttaacagaagttgacggtagggacgaaattcaaaaagttatcaacttacagggtttgttttagaac 45493024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 286
Target Start/End: Original strand, 45500696 - 45500766
Alignment:
Q  216 tttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
    ||||| |||||||||||||||| ||||||||||  ||||| |||   ||||||| ||| ||||||||||||    
T  45500696 tttttttaacagaagttgacggtagggacgaaattcaaaaagttatcaacttacagggtttgttttagaac 45500766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 286
Target Start/End: Complemental strand, 44463732 - 44463631
Alignment:
Q  185 gccacgtcagctaccgttagacacataggtgtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttaga 284  Q
    |||| ||||||| |||||||||||||| | |||||||||||||| | | |||  |||||| |||| || || | ||||||||||| |||  | |||||||    
T  44463732 gccatgtcagctgccgttagacacataagcgtttttgtaacagatgataacgatagggaccaaaagcataaagcttataacttacagggtctattttaga 44463633  T
Q  285 ac 286  Q
    ||    
T  44463632 ac 44463631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1176 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold1176
Description:

Target: scaffold1176; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 215 - 286
Target Start/End: Complemental strand, 2189 - 2118
Alignment:
Q  215 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
    |||||||||||||||||| |||  |||||| |||||||||||||||||||||||||||||||||||||||||    
T  2189 gtttttgtaacagaagttaacgttagggactaaaaccaaaacgtttataacttacgggggttgttttagaac 2118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 183 - 285
Target Start/End: Original strand, 7185745 - 7185847
Alignment:
Q  183 tcgccacgtcagctaccgttagacacataggtgtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgtttta 282  Q
    |||||| ||||||| |||| ||||||||| |||||||||||||||| | ||||||||||||| |||| ||||| ||||||||||||| |||  |||||||    
T  7185745 tcgccatgtcagctgccgtcagacacataagtgtttttgtaacagatgctgacggaagggaccaaaagcaaaatgtttataacttacagggtctgtttta 7185844  T
Q  283 gaa 285  Q
    |||    
T  7185845 gaa 7185847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 184 - 286
Target Start/End: Original strand, 50316940 - 50317042
Alignment:
Q  184 cgccacgtcagctaccgttagacacataggtgtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttag 283  Q
    |||||||||||  ||||||||||||||  | |||||||||||||| | |||||| ||||||||||| |||||||||| |||||||| ||| |||||||||    
T  50316940 cgccacgtcagtcaccgttagacacatcagcgtttttgtaacagatgctgacgggagggacgaaaatcaaaacgtttgtaacttacagggtttgttttag 50317039  T
Q  284 aac 286  Q
    |||    
T  50317040 aac 50317042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 184 - 286
Target Start/End: Original strand, 24438837 - 24438939
Alignment:
Q  184 cgccacgtcagctaccgttagacacataggtgtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttag 283  Q
    |||||||||||  ||||||||||||||    |||||||||||||| | ||||||  |||||||||| |||||||||| |||||||| ||| |||||||||    
T  24438837 cgccacgtcagtcaccgttagacacatcaacgtttttgtaacagatgctgacgggtgggacgaaaatcaaaacgtttgtaacttacagggtttgttttag 24438936  T
Q  284 aac 286  Q
    |||    
T  24438937 aac 24438939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 185 - 285
Target Start/End: Original strand, 35973165 - 35973265
Alignment:
Q  185 gccacgtcagctaccgttagacacataggtgtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttaga 284  Q
    |||||||||||  ||||| | |||||||  |||||||||||||| | |||||| |  ||| ||||||||||||||||||||||||||| ||| |||||||    
T  35973165 gccacgtcagcctccgtttgccacatagacgtttttgtaacagatggtgacggcaatgaccaaaaccaaaacgtttataacttacgggagttattttaga 35973264  T
Q  285 a 285  Q
    |    
T  35973265 a 35973265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 183 - 286
Target Start/End: Original strand, 13211001 - 13211104
Alignment:
Q  183 tcgccacgtcagctaccgttagacacataggtgtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgtttta 282  Q
    ||||||| |||||| |||||||||||||| | ||||||||||| || | |||||| |||||  |||| |||||| |||||||||||| |||  |||||||    
T  13211001 tcgccacatcagctgccgttagacacataagcgtttttgtaacggatgatgacggcagggaataaaagcaaaacatttataacttacagggtctgtttta 13211100  T
Q  283 gaac 286  Q
    ||||    
T  13211101 gaac 13211104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 215 - 286
Target Start/End: Original strand, 19057788 - 19057859
Alignment:
Q  215 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
    |||||||||||||||||||||||||||||||||||  |||| |||  |||||||  ||||||||||||||||    
T  19057788 gtttttgtaacagaagttgacggaagggacgaaaataaaaaagttattaacttataggggttgttttagaac 19057859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 215 - 286
Target Start/End: Complemental strand, 28919221 - 28919150
Alignment:
Q  215 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
    ||||||||||| ||||||||||||||||||||||| ||||| |||  |||||||  ||||||||||||||||    
T  28919221 gtttttgtaacggaagttgacggaagggacgaaaatcaaaaagttattaacttataggggttgttttagaac 28919150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 215 - 286
Target Start/End: Original strand, 28920576 - 28920647
Alignment:
Q  215 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
    ||||||||||| ||||||||||| ||||||||||| ||||| |||  |||||||| ||||||||||||||||    
T  28920576 gtttttgtaacggaagttgacgggagggacgaaaatcaaaaggttattaacttacaggggttgttttagaac 28920647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 215 - 286
Target Start/End: Original strand, 7655185 - 7655256
Alignment:
Q  215 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
    ||||||||||  ||||||||||| ||||||||||| ||||| |||  |||||||| ||||||||||||||||    
T  7655185 gtttttgtaatggaagttgacgggagggacgaaaatcaaaaagttattaacttacaggggttgttttagaac 7655256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 215 - 286
Target Start/End: Original strand, 16673177 - 16673248
Alignment:
Q  215 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
    ||||||||||| ||||||||||| ||||||||||| ||||| |||  |||||||  ||||||||||||||||    
T  16673177 gtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttataggggttgttttagaac 16673248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 286
Target Start/End: Complemental strand, 13209743 - 13209642
Alignment:
Q  185 gccacgtcagctaccgttagacacataggtgtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttaga 284  Q
    |||||||||||| || |||||||||||    ||||||||||||| | |||||| |||||| |||| ||||||||||||| ||||| |||  | |||||||    
T  13209743 gccacgtcagctgccattagacacataaacatttttgtaacagatggtgacggcagggaccaaaagcaaaacgtttatatcttacagggtctattttaga 13209644  T
Q  285 ac 286  Q
    ||    
T  13209643 ac 13209642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 286
Target Start/End: Complemental strand, 16672793 - 16672722
Alignment:
Q  215 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
    ||||||||||| ||||||||||| ||||||| ||| ||||| |||  |||||||  ||||||||||||||||    
T  16672793 gtttttgtaacggaagttgacgggagggacggaaatcaaaaagttattaacttataggggttgttttagaac 16672722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 286
Target Start/End: Complemental strand, 33258018 - 33257948
Alignment:
Q  215 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
    ||||||||||| ||||||||||| ||||||||||| ||||| |||  ||||||||  |||||||||||||||    
T  33258018 gtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttac-agggttgttttagaac 33257948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 286
Target Start/End: Complemental strand, 33278190 - 33278120
Alignment:
Q  215 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
    ||||||||||| ||||||||||| ||||||||||| ||||| |||  ||||||||  |||||||||||||||    
T  33278190 gtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttac-agggttgttttagaac 33278120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 286
Target Start/End: Original strand, 36146833 - 36146904
Alignment:
Q  215 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
    ||||||||||| ||||||||||| ||||||||||| ||||| |||  ||||||||  || ||||||||||||    
T  36146833 gtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacatggattgttttagaac 36146904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 211 - 286
Target Start/End: Complemental strand, 41668415 - 41668340
Alignment:
Q  211 aggtgtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
    ||||||||||||||||||  ||||||| || |||||||| ||||| |||  |||||||| | ||||||||||||||    
T  41668415 aggtgtttttgtaacagagtttgacgggagagacgaaaagcaaaaagttattaacttacagaggttgttttagaac 41668340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 286
Target Start/End: Complemental strand, 36145481 - 36145411
Alignment:
Q  216 tttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
    |||||||||  ||||||||||| ||||||||||| ||||| |||  |||||||  ||||||||||||||||    
T  36145481 tttttgtaatggaagttgacgggagggacgaaaatcaaaaagttattaacttataggggttgttttagaac 36145411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 217 - 286
Target Start/End: Complemental strand, 19249455 - 19249387
Alignment:
Q  217 ttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
    ||||||||||||  || |||||||||||||||| ||||| |||  |||||||| ||||||||||||||||    
T  19249455 ttttgtaacagagttttacggaagggacgaaaagcaaaa-gttattaacttaccggggttgttttagaac 19249387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 286
Target Start/End: Original strand, 22684054 - 22684142
Alignment:
Q  198 ccgttagacacataggtgtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
    ||||||||||| | || |||||| |||||||||||||||| ||||||||||  ||||| |||   || |||| ||| ||||||||||||    
T  22684054 ccgttagacactttggcgtttttttaacagaagttgacggtagggacgaaattcaaaaagttatcaatttacagggtttgttttagaac 22684142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 215 - 286
Target Start/End: Complemental strand, 18309223 - 18309152
Alignment:
Q  215 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
    |||||||||| ||| | |||||  ||| || ||||||||||||||||||||||||  || ||||||||||||    
T  18309223 gtttttgtaatagacgatgacgacaggaaccaaaaccaaaacgtttataacttacaaggattgttttagaac 18309152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 197 - 268
Target Start/End: Complemental strand, 33981716 - 33981645
Alignment:
Q  197 accgttagacacataggtgtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataactta 268  Q
    ||||||||||||||   ||||||||||| ||| | |||||| ||| ||||||| |||||||||| |||||||    
T  33981716 accgttagacacatcaatgtttttgtaatagatgctgacgggaggtacgaaaatcaaaacgtttgtaactta 33981645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 282
Target Start/End: Original strand, 33259294 - 33259360
Alignment:
Q  216 tttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgtttta 282  Q
    |||||||||| ||||||||||| |||||||||||  |||| |||  |||||||  ||||||||||||    
T  33259294 tttttgtaacggaagttgacgggagggacgaaaattaaaaagttattaacttataggggttgtttta 33259360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 282
Target Start/End: Original strand, 33279453 - 33279519
Alignment:
Q  216 tttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgtttta 282  Q
    |||||||||| ||||||||||| |||||||||||  |||| |||  |||||||  ||||||||||||    
T  33279453 tttttgtaacggaagttgacgggagggacgaaaattaaaaagttattaacttataggggttgtttta 33279519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 255
Target Start/End: Complemental strand, 1969685 - 1969645
Alignment:
Q  215 gtttttgtaacagaagttgacggaagggacgaaaaccaaaa 255  Q
    ||||||||||| ||||||||||| ||||||||||| |||||    
T  1969685 gtttttgtaacggaagttgacgggagggacgaaaatcaaaa 1969645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 286
Target Start/End: Complemental strand, 33981639 - 33981571
Alignment:
Q  218 tttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
    ||||||||| | |||||||| | ||||||||| |||||||||| ||||||||  |  ||||||||||||    
T  33981639 tttgtaacacatgttgacgggatggacgaaaatcaaaacgtttgtaacttacatgatttgttttagaac 33981571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 215 - 286
Target Start/End: Complemental strand, 8745570 - 8745499
Alignment:
Q  215 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
    ||||||||||||||  ||||||| ||||||||||| ||||| |||  |||||||||||||||||||||||||    
T  8745570 gtttttgtaacagagtttgacgggagggacgaaaagcaaaaagttattaacttacgggggttgttttagaac 8745499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 215 - 285
Target Start/End: Complemental strand, 10707807 - 10707740
Alignment:
Q  215 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaa 285  Q
    ||||||||||||||   ||| || |||||| |||||||||||||||||||||||||||||||||| |||||    
T  10707807 gtttttgtaacaga---tgatggtagggaccaaaaccaaaacgtttataacttacgggggttgttatagaa 10707740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 215 - 286
Target Start/End: Original strand, 2956156 - 2956227
Alignment:
Q  215 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
    ||||||||||||||  ||||||| ||||||||||| ||||| |||  ||||||||||| |||||||||||||    
T  2956156 gtttttgtaacagagtttgacgggagggacgaaaagcaaaaagttattaacttacgggagttgttttagaac 2956227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 286
Target Start/End: Complemental strand, 19082804 - 19082733
Alignment:
Q  215 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
    ||||||||||| ||||||||||| ||||||||||| ||||| |||  |||||||   |||||||||||||||    
T  19082804 gtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttatatgggttgttttagaac 19082733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 219 - 286
Target Start/End: Original strand, 19084045 - 19084112
Alignment:
Q  219 ttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
    ||||||| ||||||||||| ||||||||||| ||||| |||  |||| ||| ||||||||||||||||    
T  19084045 ttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacatacaggggttgttttagaac 19084112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 286
Target Start/End: Original strand, 1258360 - 1258432
Alignment:
Q  215 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgttta-taacttacgggggttgttttagaac 286  Q
    ||||||||||||||  ||||||| ||||||||||| ||||| ||||| |||| ||  ||||||||||||||||    
T  1258360 gtttttgtaacagagtttgacgggagggacgaaaagcaaaaagtttattaacctataggggttgttttagaac 1258432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 286
Target Start/End: Original strand, 10699891 - 10699931
Alignment:
Q  246 aaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
    ||||||||||||||||||||||||  |||||||||||||||    
T  10699891 aaaaccaaaacgtttataacttacaagggttgttttagaac 10699931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 187 - 286
Target Start/End: Complemental strand, 1443583 - 1443484
Alignment:
Q  187 cacgtcagctaccgttagacacataggtgtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
    |||| |||| ||||||||||||||    |||||| ||||| ||||| |||  |||||| |||||||||| ||| | ||||||| ||| ||||||||||||    
T  1443583 cacgccagccaccgttagacacatcaacgtttttttaacaaaagttaacgttagggactaaaaccaaaaagttaacaacttaccgggtttgttttagaac 1443484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 214 - 269
Target Start/End: Original strand, 7678563 - 7678618
Alignment:
Q  214 tgtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttac 269  Q
    ||||||||||||||||| | |||| ||||||||||| ||||||||| | |||||||    
T  7678563 tgtttttgtaacagaagctaacgggagggacgaaaagcaaaacgttaacaacttac 7678618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 215 - 286
Target Start/End: Original strand, 8752721 - 8752792
Alignment:
Q  215 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
    |||||||||||| |  ||||||| ||||||||||| ||||| |||  |||||| | ||||||||||||||||    
T  8752721 gtttttgtaacaaagtttgacgggagggacgaaaagcaaaaggttattaacttgcaggggttgttttagaac 8752792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 286
Target Start/End: Complemental strand, 10699344 - 10699297
Alignment:
Q  239 agggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
    |||||| |||| ||||||||||||||||||| | ||||||||||||||    
T  10699344 agggaccaaaatcaaaacgtttataacttacagaggttgttttagaac 10699297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 286
Target Start/End: Original strand, 4296328 - 4296398
Alignment:
Q  216 tttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
    ||||||||| ||| | |||||| | |||| ||||||||||||||||||||||||  || || |||||||||    
T  4296328 tttttgtaatagatgatgacggcatggaccaaaaccaaaacgtttataacttacacggtttattttagaac 4296398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 285
Target Start/End: Complemental strand, 1256851 - 1256782
Alignment:
Q  216 tttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaa 285  Q
    |||||||||||||  ||||||| |||||||||||  |||| |||  |||||||  |||||||||||||||    
T  1256851 tttttgtaacagagtttgacgggagggacgaaaagtaaaaagttattaacttataggggttgttttagaa 1256782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 215 - 285
Target Start/End: Complemental strand, 18597770 - 18597700
Alignment:
Q  215 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaa 285  Q
    ||||||||||| ||||||||||| ||||||||||| ||||| |||  |||||||||| |||||||||||||    
T  18597770 gtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacggaggttgttttagaa 18597700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 185 - 286
Target Start/End: Original strand, 54536587 - 54536688
Alignment:
Q  185 gccacgtcagctaccgttagacacataggtgtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttaga 284  Q
    |||||||||||| ||||||||||||||   |||||||||||||| | |||| | |||||| |||| |||||||||||||| ||||  ||  |||||||||    
T  54536587 gccacgtcagctgccgttagacacataaacgtttttgtaacagatggtgacagcagggaccaaaagcaaaacgtttataatttacatggtctgttttaga 54536686  T
Q  285 ac 286  Q
    ||    
T  54536687 ac 54536688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 215 - 286
Target Start/End: Complemental strand, 19994636 - 19994565
Alignment:
Q  215 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
    ||||||||||| ||||||||||| ||||||||||| ||||| |||  |||||||  ||||||||||||||||    
T  19994636 gtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttataggggttgttttagaac 19994565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 215 - 286
Target Start/End: Original strand, 19995975 - 19996046
Alignment:
Q  215 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
    ||||||||||| |||||||| || ||||||||||| ||||| |||  |||||||| ||||||||||||||||    
T  19995975 gtttttgtaacggaagttgatgggagggacgaaaatcaaaaagttattaacttacaggggttgttttagaac 19996046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 183 - 286
Target Start/End: Original strand, 42889700 - 42889802
Alignment:
Q  183 tcgccacgtcagctaccgttagacacataggtgtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgtttta 282  Q
    |||||| |||||||  ||| ||||||||| | |||||||||||||| |||||||| |||||| |||| ||||| |||||||||||||  ||  |||||||    
T  42889700 tcgccatgtcagctgtcgtcagacacataagcgtttttgtaacaga-gttgacggcagggaccaaaagcaaaatgtttataacttacatggtctgtttta 42889798  T
Q  283 gaac 286  Q
    ||||    
T  42889799 gaac 42889802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 215 - 286
Target Start/End: Complemental strand, 44251743 - 44251672
Alignment:
Q  215 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
    ||||||||||| ||||||||||| ||||||||||| ||||| |||  ||||||||  |||||||||||||||    
T  44251743 gtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacaagggttgttttagaac 44251672  T

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Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 215 - 286
Target Start/End: Complemental strand, 53355238 - 53355167
Alignment:
Q  215 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
    ||||||||||| | ||||||||| ||||||||||| ||||| |||  |||||||| ||||||||||||||||    
T  53355238 gtttttgtaacggcagttgacgggagggacgaaaatcaaaaagttattaacttacaggggttgttttagaac 53355167  T

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Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 206 - 286
Target Start/End: Complemental strand, 22307818 - 22307738
Alignment:
Q  206 cacataggtgtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
    |||||||  ||||||||||||||   |||||| |||||| |||||||||| | |||||||||||  |||||||||||||||    
T  22307818 cacatagacgtttttgtaacagattatgacggcagggactaaaaccaaaatgcttataacttacaagggttgttttagaac 22307738  T

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Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 282
Target Start/End: Original strand, 10338089 - 10338156
Alignment:
Q  215 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgtttta 282  Q
    ||||||||||||||  ||||||| ||||||||||| ||||| |||  |||||||| ||||||||||||    
T  10338089 gtttttgtaacagagtttgacgggagggacgaaaagcaaaaagttattaacttacaggggttgtttta 10338156  T

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Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 286
Target Start/End: Original strand, 44253113 - 44253184
Alignment:
Q  215 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
    ||||||||||| ||||||||||| || |||||||| ||||| |||  |||||||  ||||||||||||||||    
T  44253113 gtttttgtaacggaagttgacgggagagacgaaaatcaaaaagttattaacttataggggttgttttagaac 44253184  T

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Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 286
Target Start/End: Original strand, 48713383 - 48713454
Alignment:
Q  215 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
    ||||||||||||||  ||||| | ||||||||||| ||||| |||  |||||||| ||||||||||||||||    
T  48713383 gtttttgtaacagagtttgactggagggacgaaaagcaaaaggttattaacttacaggggttgttttagaac 48713454  T

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Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 286
Target Start/End: Complemental strand, 54121965 - 54121894
Alignment:
Q  215 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
    ||||||||||||||  || |||| ||||||||||| ||||| |||  |||||||| ||||||||||||||||    
T  54121965 gtttttgtaacagagtttaacgggagggacgaaaagcaaaaagttattaacttacaggggttgttttagaac 54121894  T

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Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 286
Target Start/End: Original strand, 55948874 - 55948945
Alignment:
Q  215 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
    ||||||||||| ||||||||||| ||||| ||||| | ||| |||  |||||||| ||||||||||||||||    
T  55948874 gtttttgtaacggaagttgacgggagggaagaaaatccaaaagttattaacttacaggggttgttttagaac 55948945  T

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Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 197 - 286
Target Start/End: Complemental strand, 10337259 - 10337171
Alignment:
Q  197 accgttagacacataggtgtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
    |||||||| |||| ||| || |||||||||||  ||||||| ||||| ||||| ||||| |||  |||||||| ||||||||||||||||    
T  10337259 accgttagccaca-aggcgtctttgtaacagagtttgacgggagggatgaaaagcaaaaggttattaacttacaggggttgttttagaac 10337171  T

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Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 206 - 285
Target Start/End: Original strand, 22309050 - 22309129
Alignment:
Q  206 cacataggtgtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaa 285  Q
    |||||||  ||||||||||| ||   |||||| | |||| |||||||||| | ||||||||||| |||||||||||||||    
T  22309050 cacatagacgtttttgtaactgattatgacggcacggactaaaaccaaaatgcttataacttacaggggttgttttagaa 22309129  T

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Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 215 - 286
Target Start/End: Original strand, 25351721 - 25351791
Alignment:
Q  215 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
    ||||||||||| || | |||| | |||||| ||||||||||||||||||||||||  ||||| |||||||||    
T  25351721 gtttttgtaactgatgatgacagcagggaccaaaaccaaaacgtttataacttac-agggttattttagaac 25351791  T

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Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 215 - 286
Target Start/End: Original strand, 32082554 - 32082625
Alignment:
Q  215 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
    ||||||||||||||  ||||| | ||||||||||| ||||| |||  |||||||| |||||| |||||||||    
T  32082554 gtttttgtaacagagtttgacaggagggacgaaaagcaaaaagttattaacttacaggggttattttagaac 32082625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 215 - 286
Target Start/End: Complemental strand, 42977336 - 42977265
Alignment:
Q  215 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
    ||||||||||||||  ||||||| ||||||||||| ||||| |||  |||||||   |||||||||||||||    
T  42977336 gtttttgtaacagagtttgacgggagggacgaaaagcaaaaagttattaacttaaatgggttgttttagaac 42977265  T

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Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 215 - 286
Target Start/End: Original strand, 54123466 - 54123537
Alignment:
Q  215 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
    |||||||| |||||  ||||||| ||||||||||| ||||| |||  |||||||| || |||||||||||||    
T  54123466 gtttttgttacagagtttgacgggagggacgaaaagcaaaaagttattaacttacaggagttgttttagaac 54123537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 183 - 286
Target Start/End: Complemental strand, 54535148 - 54535045
Alignment:
Q  183 tcgccacgtcagctaccgttagacacataggtgtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgtttta 282  Q
    ||||||||| |||| |||||||||||||| | |||||| |||  || |  ||||| |||||| |||| |||||| ||||||| ||||||||  | |||||    
T  54535148 tcgccacgtaagctgccgttagacacataagcgtttttataatggatgaagacggtagggacaaaaagcaaaacatttataatttacggggtctatttta 54535049  T
Q  283 gaac 286  Q
    ||||    
T  54535048 gaac 54535045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 286
Target Start/End: Complemental strand, 3069061 - 3068991
Alignment:
Q  216 tttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
    ||||||||||||| | | |||| ||||||||||| |||||| ||| ||| |||| ||| ||||||||||||    
T  3069061 tttttgtaacagatgctaacgggagggacgaaaatcaaaacatttgtaatttacagggattgttttagaac 3068991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 285
Target Start/End: Complemental strand, 33607606 - 33607536
Alignment:
Q  215 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaa 285  Q
    |||||| ||||||| ||| |||  |||||| |||||||||| ||||| ||||||| ||| |||||||||||    
T  33607606 gtttttctaacagatgttaacgttagggactaaaaccaaaatgtttacaacttacagggtttgttttagaa 33607536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 286
Target Start/End: Complemental strand, 24919156 - 24919119
Alignment:
Q  249 accaaaacgtttataacttacgggggttgttttagaac 286  Q
    |||||| |||||||||||||| ||||||||||||||||    
T  24919156 accaaagcgtttataacttacaggggttgttttagaac 24919119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1118 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold1118
Description:

Target: scaffold1118; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 216 - 282
Target Start/End: Complemental strand, 2549 - 2483
Alignment:
Q  216 tttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgtttta 282  Q
    ||||||||||||||||| |||  |||||| ||||||||||||  |||||||||| ||||||||||||    
T  2549 tttttgtaacagaagttaacgttagggactaaaaccaaaacgcgtataacttacaggggttgtttta 2483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0672 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0672
Description:

Target: scaffold0672; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 286
Target Start/End: Original strand, 475 - 521
Alignment:
Q  240 gggacgaaaaccaaaacgtttataacttacgggggttgttttagaac 286  Q
    ||||| |||||||||||||||||||||||| |||  |||||||||||    
T  475 gggaccaaaaccaaaacgtttataacttacagggtctgttttagaac 521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0280 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0280
Description:

Target: scaffold0280; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 285
Target Start/End: Complemental strand, 12270 - 12200
Alignment:
Q  215 gtttttgtaacagaagttgacggaagggacgaaaaccaaaacgtttataacttacgggggttgttttagaa 285  Q
    |||||||| ||||||||| |||  |||||| |||||||||| ||| | ||||||| ||| |||||||||||    
T  12270 gtttttgtcacagaagttaacgttagggactaaaaccaaaaggttaacaacttacagggtttgttttagaa 12200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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