View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12259_low_9 (Length: 318)

Name: NF12259_low_9
Description: NF12259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12259_low_9
NF12259_low_9
[»] chr2 (4 HSPs)
chr2 (1-238)||(4048068-4048309)
chr2 (262-301)||(18176947-18176986)
chr2 (262-294)||(3366292-3366324)
chr2 (265-301)||(28244457-28244493)
[»] chr7 (2 HSPs)
chr7 (262-301)||(13162926-13162965)
chr7 (262-301)||(43573568-43573607)
[»] chr6 (3 HSPs)
chr6 (262-301)||(3610986-3611025)
chr6 (262-301)||(4820258-4820297)
chr6 (262-301)||(30036819-30036858)
[»] chr5 (4 HSPs)
chr5 (262-301)||(18842346-18842385)
chr5 (262-301)||(35099030-35099069)
chr5 (262-300)||(8675459-8675497)
chr5 (268-301)||(6931084-6931117)
[»] chr4 (2 HSPs)
chr4 (262-301)||(624337-624376)
chr4 (262-301)||(41486168-41486207)
[»] chr3 (3 HSPs)
chr3 (262-301)||(37508523-37508562)
chr3 (262-301)||(39671123-39671162)
chr3 (263-301)||(55013011-55013049)
[»] chr1 (2 HSPs)
chr1 (262-301)||(1852976-1853015)
chr1 (262-301)||(33024596-33024635)
[»] chr8 (2 HSPs)
chr8 (262-300)||(38708322-38708360)
chr8 (262-300)||(41520975-41521013)


Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 4048309 - 4048068
Alignment:
Q  1 aagtgtgaaatgacggccggcaggtggagcagcagcagctgcactctattgtctgtgctcgtgacagatt----attagtagtgtgatgaaagatgatgg 96  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||    
T  4048309 aagtgtgaaatgacggccggcaggtggagcagcagcagctgcactctattgtctgtgctcgtgacagattgattattagtagtgtgatgaaagatgatgg 4048210  T
Q  97 ccatggtgggtgctcactgtgtaatactactgctggctgagtgtatgtgagagcactactgtaattttataatctcagatagcaagattccaacatgtga 196  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4048209 tcatggtgggtgctcactgtgtaatactactgctggctgagtgtatgtgagagcactactgtaattttataatctcagatagcaagattccaacatgtga 4048110  T
Q  197 ttatttatggaaattaaattgagtaaataatcaagttgatcc 238  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  4048109 ttatttatggaaattaaattgagtaaataatcaagttgatcc 4048068  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 262 - 301
Target Start/End: Original strand, 18176947 - 18176986
Alignment:
Q  262 gatatttgaacatctatttggtgataacttttgcaacaac 301  Q
    ||||||||||||||||||| |||| |||||||||||||||    
T  18176947 gatatttgaacatctatttagtgacaacttttgcaacaac 18176986  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 294
Target Start/End: Original strand, 3366292 - 3366324
Alignment:
Q  262 gatatttgaacatctatttggtgataacttttg 294  Q
    |||||||||||| ||||||||||||||||||||    
T  3366292 gatatttgaacagctatttggtgataacttttg 3366324  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 265 - 301
Target Start/End: Complemental strand, 28244493 - 28244457
Alignment:
Q  265 atttgaacatctatttggtgataacttttgcaacaac 301  Q
    |||||||||||||||| |||||||||||||| |||||    
T  28244493 atttgaacatctattttgtgataacttttgctacaac 28244457  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 262 - 301
Target Start/End: Original strand, 13162926 - 13162965
Alignment:
Q  262 gatatttgaacatctatttggtgataacttttgcaacaac 301  Q
    ||||||||||||||||||| |||| |||||||||||||||    
T  13162926 gatatttgaacatctatttagtgacaacttttgcaacaac 13162965  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 262 - 301
Target Start/End: Complemental strand, 43573607 - 43573568
Alignment:
Q  262 gatatttgaacatctatttggtgataacttttgcaacaac 301  Q
    ||||||||||||||||||| |||| |||||||||||||||    
T  43573607 gatatttgaacatctattttgtgacaacttttgcaacaac 43573568  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 262 - 301
Target Start/End: Complemental strand, 3611025 - 3610986
Alignment:
Q  262 gatatttgaacatctatttggtgataacttttgcaacaac 301  Q
    |||||||||||||| |||| ||||||||||||||||||||    
T  3611025 gatatttgaacatccatttagtgataacttttgcaacaac 3610986  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 262 - 301
Target Start/End: Original strand, 4820258 - 4820297
Alignment:
Q  262 gatatttgaacatctatttggtgataacttttgcaacaac 301  Q
    |||||||||||||| |||| ||||||||||||||||||||    
T  4820258 gatatttgaacatccatttagtgataacttttgcaacaac 4820297  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 262 - 301
Target Start/End: Complemental strand, 30036858 - 30036819
Alignment:
Q  262 gatatttgaacatctatttggtgataacttttgcaacaac 301  Q
    ||||||||||||||||||| |||| |||||||||||||||    
T  30036858 gatatttgaacatctatttagtgacaacttttgcaacaac 30036819  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 262 - 301
Target Start/End: Complemental strand, 18842385 - 18842346
Alignment:
Q  262 gatatttgaacatctatttggtgataacttttgcaacaac 301  Q
    |||||||||||||| |||| ||||||||||||||||||||    
T  18842385 gatatttgaacatccatttagtgataacttttgcaacaac 18842346  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 262 - 301
Target Start/End: Complemental strand, 35099069 - 35099030
Alignment:
Q  262 gatatttgaacatctatttggtgataacttttgcaacaac 301  Q
    ||||||||||||||||||| |||| |||||||||||||||    
T  35099069 gatatttgaacatctatttagtgacaacttttgcaacaac 35099030  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 300
Target Start/End: Complemental strand, 8675497 - 8675459
Alignment:
Q  262 gatatttgaacatctatttggtgataacttttgcaacaa 300  Q
    |||||||||||||| |||| |||||||||||||||||||    
T  8675497 gatatttgaacatccattttgtgataacttttgcaacaa 8675459  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 301
Target Start/End: Complemental strand, 6931117 - 6931084
Alignment:
Q  268 tgaacatctatttggtgataacttttgcaacaac 301  Q
    ||||||||||||| ||||||||||||||||||||    
T  6931117 tgaacatctatttagtgataacttttgcaacaac 6931084  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 262 - 301
Target Start/End: Complemental strand, 624376 - 624337
Alignment:
Q  262 gatatttgaacatctatttggtgataacttttgcaacaac 301  Q
    ||||||||||||||||||| |||| |||||||||||||||    
T  624376 gatatttgaacatctatttagtgacaacttttgcaacaac 624337  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 262 - 301
Target Start/End: Complemental strand, 41486207 - 41486168
Alignment:
Q  262 gatatttgaacatctatttggtgataacttttgcaacaac 301  Q
    |||||||||||||| |||| ||||||||||||||||||||    
T  41486207 gatatttgaacatccatttagtgataacttttgcaacaac 41486168  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 262 - 301
Target Start/End: Complemental strand, 37508562 - 37508523
Alignment:
Q  262 gatatttgaacatctatttggtgataacttttgcaacaac 301  Q
    |||||||||||||| |||| ||||||||||||||||||||    
T  37508562 gatatttgaacatccatttagtgataacttttgcaacaac 37508523  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 262 - 301
Target Start/End: Complemental strand, 39671162 - 39671123
Alignment:
Q  262 gatatttgaacatctatttggtgataacttttgcaacaac 301  Q
    ||||||||||||||||||| |||| |||||||||||||||    
T  39671162 gatatttgaacatctatttagtgacaacttttgcaacaac 39671123  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 301
Target Start/End: Original strand, 55013011 - 55013049
Alignment:
Q  263 atatttgaacatctatttggtgataacttttgcaacaac 301  Q
    ||||||||||||| |||| ||||||||||||||||||||    
T  55013011 atatttgaacatccatttagtgataacttttgcaacaac 55013049  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 262 - 301
Target Start/End: Complemental strand, 1853015 - 1852976
Alignment:
Q  262 gatatttgaacatctatttggtgataacttttgcaacaac 301  Q
    ||||||||||||||||||| |||| |||||||||||||||    
T  1853015 gatatttgaacatctatttagtgacaacttttgcaacaac 1852976  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 262 - 301
Target Start/End: Complemental strand, 33024635 - 33024596
Alignment:
Q  262 gatatttgaacatctatttggtgataacttttgcaacaac 301  Q
    ||||||||||||||||||| |||| |||||||||||||||    
T  33024635 gatatttgaacatctatttagtgacaacttttgcaacaac 33024596  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 300
Target Start/End: Complemental strand, 38708360 - 38708322
Alignment:
Q  262 gatatttgaacatctatttggtgataacttttgcaacaa 300  Q
    ||||||||||||||||||||||||||| ||||| |||||    
T  38708360 gatatttgaacatctatttggtgataatttttgtaacaa 38708322  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 300
Target Start/End: Original strand, 41520975 - 41521013
Alignment:
Q  262 gatatttgaacatctatttggtgataacttttgcaacaa 300  Q
    |||||||||||||| |||| |||||||||||||||||||    
T  41520975 gatatttgaacatccatttagtgataacttttgcaacaa 41521013  T

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