View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12260_high_1 (Length: 537)
Name: NF12260_high_1
Description: NF12260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12260_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 491; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 15 - 529
Target Start/End: Complemental strand, 42126184 - 42125670
Alignment:
| Q |
15 |
ctgtgtttatctatatctctcttttactttatatcctctacaacttacagacatttcaaaaatacacaaaaaccaaagtcgacatcaaaattttgagtca |
114 |
Q |
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| T |
42126184 |
ctgtgtttatctatatctctcttttactttatatcctctacaacttacagacatttcaaaaatacacaaaaaccaaagtcgacatcaaaattttgagtca |
42126085 |
T |
|
| Q |
115 |
aaaatcatgtctataattaataattctccacgagccacgatatattaaatttataacagaaattgatatttatttattttttctttggtttcagaatgca |
214 |
Q |
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||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42126084 |
aaaatcatgtctataattaataattgtccacgagtcacgatctattaaatttataacagaaattgatatttatttattttttctttggtttcagaatgca |
42125985 |
T |
|
| Q |
215 |
gtgttgcttgttaccatgaccaaaaccgagtctgatgctatacaccattttcttgggatttatcttgttgcctttgttagttcccttgctgcagctatta |
314 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42125984 |
gtgttgcttgttactatgaccaaaaccgagtctgatgctatataccattttcttgggatttatcttgttgcctttgttagttcccttgctgcagctatta |
42125885 |
T |
|
| Q |
315 |
cttacttcatgtatacatggttcttccaaaaacctgcttcaatccaaagcttttcatttgtttgcatatgtggtgcctttcattggattccattcactat |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42125884 |
cttacttcatgtatacatggttcttccaaaaacctgcttcaatccaaagcttttcatttgtttgcatatgtggtgcctttcattggattccattcactat |
42125785 |
T |
|
| Q |
415 |
tactgcatatgctaccatgttttctgaagttcaatcaaatcccattgcctttgccatttcatttacatgtgcttacttgcttcatggtctcatactcacc |
514 |
Q |
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| T |
42125784 |
tactgcatatgctaccatgttttctgaagttcaatcaaatcccattgcctttgccatttcatttacatgtgcttacttgcttcatggtctcatactcacc |
42125685 |
T |
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| Q |
515 |
tctctcacaggttct |
529 |
Q |
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||||||||| ||||| |
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| T |
42125684 |
tctctcacatgttct |
42125670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 364 - 522
Target Start/End: Complemental strand, 24929134 - 24928976
Alignment:
| Q |
364 |
cttttcatttgtttgcatatgtggtgcctttcattggattccattcactattactgcatatgctaccatgttttctgaagttcaatcaaatcccattgcc |
463 |
Q |
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||||||||||||||||||||||||||| ||||| ||||| ||||| || | | ||||||||||||||||||||||||||| | |||||| ||||| || |
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| T |
24929134 |
cttttcatttgtttgcatatgtggtgcttttcactggatcccatttaccgtcattgcatatgctaccatgttttctgaagtcccatcaaaccccatcacc |
24929035 |
T |
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| Q |
464 |
tttgccatttcatttacatgtgcttacttgcttcatggtctcatactcacctctctcac |
522 |
Q |
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||||||||| ||||||| || ||||||||||| ||||| ||||||| | ||||||| |
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| T |
24929034 |
tttgccattacatttaccatcgcctacttgcttcacggtctaatactcatcgctctcac |
24928976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 33844149 - 33844221
Alignment:
| Q |
19 |
gtttatctatatctctcttttactttatatcctctacaacttacagacatttcaaaaatacacaaaaaccaaa |
91 |
Q |
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|||||||| ||||||||| ||||| | |||| |||||||||| | |||||||||||||||||||||||||| |
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| T |
33844149 |
gtttatctctatctctctcttactatttatctcctacaacttaaatgcatttcaaaaatacacaaaaaccaaa |
33844221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 36646827 - 36646749
Alignment:
| Q |
16 |
tgtgtttatctatatctctcttttactttatatcctctacaacttac--agacatttcaaaaatacacaaaaaccaaag |
92 |
Q |
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| T |
36646827 |
tgtgtttatctctatctctcttttactttttaccttatacaacttacttagatttttaaaaaatacacaaaaatcaaag |
36646749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 12119911 - 12119845
Alignment:
| Q |
20 |
tttatctatatctctcttttactttatatcctctacaacttacagacatttcaaaaatacacaaaaa |
86 |
Q |
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||||||||||||||||| ||||||| |||| |||| ||||| | |||||||||||||||||||| |
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| T |
12119911 |
tttatctatatctctctcttactttttatcttctattggttacacatatttcaaaaatacacaaaaa |
12119845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 20809151 - 20809087
Alignment:
| Q |
18 |
tgtttatctatatctctcttttactttatatcctctacaacttacagacatttcaaaaatacaca |
82 |
Q |
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|||| |||| ||||||||| ||||||| |||| | |||||| |||| |||||| ||||||||||| |
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| T |
20809151 |
tgttcatctctatctctctcttactttttatcttttacaacatacacacatttaaaaaatacaca |
20809087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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