View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12260_low_1 (Length: 588)
Name: NF12260_low_1
Description: NF12260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12260_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 382; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 42 - 539
Target Start/End: Original strand, 10313562 - 10314057
Alignment:
| Q |
42 |
cccaattcagtgcccatagcaaacccgaagctattgtgatatgtacttcacaacttggtgcaaaccattcagtgttggccaaaacaaaaacacctcagtc |
141 |
Q |
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| T |
10313562 |
cccaattcagtgcccatagcaaacccgaagctactgtgatatgtacttcacaacttggtgaaaaccattcagtgttggccaaaacaaaaacacctcagtc |
10313661 |
T |
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| Q |
142 |
atctcggctatacacacccaacttaatgtggaatactcaaaggagttgaaacggcgcatggcaatatacagacattggatgtgatgtgtgattcttagga |
241 |
Q |
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| T |
10313662 |
atctcggctatacacacctagcttaatgtggaatactcaaaggagttgaaatggcgcattgtaatatacacacattggatgtgatgcgtgattcttagca |
10313761 |
T |
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| Q |
242 |
cgcgatccaaagtagcaaggagttgatctcattgcttttcttcattccttgttccatttctcataatcgaaacgtctataacaactatttcctaagaatc |
341 |
Q |
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| T |
10313762 |
cgcgatccaaattagcaaggagttgatctcattgcttttcttcattccttgttccatttctcataatcgaaacgtttgtaacaactatttcctaagaatc |
10313861 |
T |
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| Q |
342 |
aacaatgataaaactagtaataagcatatatagtacattcatggagttgtttggtttgggcggctttgacatgttccaaggtannnnnnnnccctctgct |
441 |
Q |
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| T |
10313862 |
aac-atgataaaactagtaataagcatatatagtacattcatagagttgtttggtttaggcggctttgacatgttccaaggtatttttttt-cctctgct |
10313959 |
T |
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| Q |
442 |
actctttcatggctttttgaaggattactattaaaactcgactttaatacatataacctaactacttttactcaaaagtgattgcaaaaggtcaggat |
539 |
Q |
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| T |
10313960 |
actctttcatggctttttgaaggattactttcaaaactcgactttaatacaaataatctaactacttttactcaaaagtgattgcaaaaggtcaggat |
10314057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 12 - 40
Target Start/End: Original strand, 10313504 - 10313532
Alignment:
| Q |
12 |
acatcactctatgaagaggctgtgctatc |
40 |
Q |
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| T |
10313504 |
acatcactctatgaagaggctgtgctatc |
10313532 |
T |
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