View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12260_low_3 (Length: 479)
Name: NF12260_low_3
Description: NF12260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12260_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 418; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 19 - 472
Target Start/End: Original strand, 52394736 - 52395189
Alignment:
| Q |
19 |
atgcagaattcgcatctagaacactttgtctagaaccaccacaagccctcaagtcatgtaaagtgctacacagtccatcttccataggagtggaaatagg |
118 |
Q |
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| T |
52394736 |
atgcagaattcgcatcttgaacactttgtctagaaccaccacaagccctcaagtcatgtaaagagctacccagcccatcttccatgggagtggaaacagg |
52394835 |
T |
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| Q |
119 |
tggttccattctaccagtgttcatattttcagtaaaaagtccattcaattcagattgcaaagtagcaaattgttcacgaccctgacacctataatcaaca |
218 |
Q |
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| T |
52394836 |
tggttccattctaccagtgttcatattttcaggaaaaagtccattcaattcagattgcaaagtagcaaattgttcacgaccctgacacctataatcaaca |
52394935 |
T |
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| Q |
219 |
ctagtaccttgtgttccaagcaatctaggtcttttaaccatgtctatattaccatcaacttctccttttcgctttatcttttggattatctgctccataa |
318 |
Q |
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| T |
52394936 |
ctagtaccttgtgttccaagcaatctaggtcttttaaccatgtctatattaccatcaacttctccttttcgctttatcttttggattatctgctccataa |
52395035 |
T |
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| Q |
319 |
acaatggccttttggccattttggtgaggaaaaatagcatctgatattgctttgattccgcacgccgaactcgctcctgaacatttgtgagttgaatatt |
418 |
Q |
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| T |
52395036 |
acaatggccttttggccattttggtgaggaaaaatagcatctgatattgctttgattccgcacgccgaactcgctcctgaacatttgtgagttgaatatt |
52395135 |
T |
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| Q |
419 |
tgaattctcttgttgttgccttagcttcagaatttccaatttccacaggttctg |
472 |
Q |
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| T |
52395136 |
tgaattctcttgttgttgccttagcttcagaatttccaatttcaacatgttctg |
52395189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 117 - 165
Target Start/End: Complemental strand, 8728782 - 8728734
Alignment:
| Q |
117 |
ggtggttccattctaccagtgttcatattttcagtaaaaagtccattca |
165 |
Q |
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| T |
8728782 |
ggtggttccattctacaagtgttcatattttcataaagaagtccattca |
8728734 |
T |
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