View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12261_high_11 (Length: 404)
Name: NF12261_high_11
Description: NF12261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12261_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 19 - 390
Target Start/End: Complemental strand, 48023117 - 48022748
Alignment:
| Q |
19 |
gtcatgccacacttctttctggcataatttgtcatcaatattcttccaccaatcttccagaacataagcctaatcctcttatttataacctttcctgcgc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48023117 |
gtcatgccacacttctttctggcataatttgtcatcaatattcttccaccaatcttccagaacataagcctaatcctcttatttataacctttcctgcgc |
48023018 |
T |
|
| Q |
119 |
caaattattttgaacaaaggatctggttgagaaagagtggtttgtactttgtattcataagcggaagcagaagcaaaaatctcatcagtagttttattcc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |
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| T |
48023017 |
caaattattttgaacaaaggatctggttgagaaagagtggtttgtactttgtattcataagctgaagcagaagcaaaaatctcattagtagttttattcc |
48022918 |
T |
|
| Q |
219 |
aaacaatattacaattatctttgttagtatgaggagatatgcatgtctacattttcaataatgtggttaggacgaagggtcattatcctatttagatctc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
48022917 |
aaacaatattacaattatctttgttagtatgaggagatatgcatgtctacattttcaataatgtggttaggaagaagggtcattatcctatttagatctc |
48022818 |
T |
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| Q |
319 |
aacccctcgtgtttaagacaaagttattaagtaagtcacatattcgaccaaaggtatttcacctagagcaca |
390 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
48022817 |
aacccctcgtgtttaagac--agttattaagtaagtcacatattcgaccaagggtatttcacctagagcaca |
48022748 |
T |
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