View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12261_high_13 (Length: 347)
Name: NF12261_high_13
Description: NF12261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12261_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 35014467 - 35014137
Alignment:
| Q |
1 |
cggttgttgctgcatagttttgatatttagtttgtctttatcaatgttgacaacaagtcaacaaatttggatgtggatggaaaaacaaatagaaaaaata |
100 |
Q |
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| T |
35014467 |
cggttgttgctgcatagttttgatatttagtttgtctttttcaatgttgacaacaagtcaacaaatttggatgtggatggaaaaacaaatagaaaaaata |
35014368 |
T |
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| Q |
101 |
caatatgcatttatttctcacacgagtaacggtgcatatgaaaatgaaaatatagtatactaataaatctacttggatgacacattattaatgacacaaa |
200 |
Q |
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| T |
35014367 |
caatatgcatttatttctcacacgagtaacggtgcatatgaaaatgaaaatatagtatactaataaatctacttggatgacacattattaatgacacaaa |
35014268 |
T |
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| Q |
201 |
ttactggtgcatgaactataacctcatgcctgctcccaccttcaatgtcacaattacaacagctggggaattatttcctttctaataaatggtccaaatt |
300 |
Q |
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| T |
35014267 |
ttactggtgcatgaactctaacctcatgcctgctcccaccttcaatgtcacaattacaacagctggggaattatttcctttctgataaatggtccaaatt |
35014168 |
T |
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| Q |
301 |
caacattggaataagggtgtctatatctaag |
331 |
Q |
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| T |
35014167 |
caacattggaataagggtgtctatatctaag |
35014137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 4 - 84
Target Start/End: Complemental strand, 39041976 - 39041896
Alignment:
| Q |
4 |
ttgttgctgcatagttttgatatttagtttgtctttatcaatgttgacaacaagtcaacaaatttggatgtggatggaaaa |
84 |
Q |
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|||||| ||||||||||||| |||| ||||||||| ||||| ||| ||||||||||||||||||||||| |||||||| |
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| T |
39041976 |
ttgttgttgcatagttttgagttttaatttgtcttttccaatgatgataacaagtcaacaaatttggatgtccatggaaaa |
39041896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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