View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12261_high_27 (Length: 205)
Name: NF12261_high_27
Description: NF12261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12261_high_27 |
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Alignment Details
Target: chr3 (Bit Score: 156; Significance: 4e-83; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 16 - 178
Target Start/End: Complemental strand, 54027371 - 54027208
Alignment:
| Q |
16 |
agatcatactataaataatttactgatactgcaatcttgacgttttggttgagaaggttcctgaccacacacattaggcaggacagaataaccagtat-c |
114 |
Q |
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| T |
54027371 |
agatcatactataaataatttactgatactgcaatcttgacgttttggttgagaaggttcctgaccacacacattaggcaggacagaataaccagtatcc |
54027272 |
T |
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| Q |
115 |
gtgggtcccaatcctcattaggggagcaaaaacattttcaatatatcggagaacatatacaaga |
178 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54027271 |
gtgggtcccaatcctcattaggggagcaaaaacattttcaatatatcggagaacatatacaaga |
54027208 |
T |
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