View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12261_high_8 (Length: 437)

Name: NF12261_high_8
Description: NF12261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12261_high_8
NF12261_high_8
[»] chr1 (8 HSPs)
chr1 (190-322)||(19727918-19728051)
chr1 (18-99)||(19728142-19728223)
chr1 (357-424)||(19727814-19727881)
chr1 (357-423)||(20303521-20303587)
chr1 (361-423)||(30613060-30613122)
chr1 (359-420)||(26940368-26940429)
chr1 (359-420)||(51048129-51048190)
chr1 (359-412)||(16660015-16660068)
[»] chr7 (9 HSPs)
chr7 (190-316)||(8970061-8970188)
chr7 (357-420)||(10048216-10048279)
chr7 (361-423)||(22753748-22753810)
chr7 (357-420)||(41816578-41816641)
chr7 (361-424)||(45268198-45268260)
chr7 (361-423)||(16871523-16871585)
chr7 (359-420)||(46290468-46290529)
chr7 (361-405)||(8969983-8970027)
chr7 (359-423)||(18791110-18791174)
[»] chr4 (7 HSPs)
chr4 (359-423)||(56051202-56051266)
chr4 (266-316)||(7591503-7591553)
chr4 (361-424)||(48589580-48589643)
chr4 (361-423)||(39747005-39747067)
chr4 (374-420)||(39121176-39121222)
chr4 (359-420)||(53448029-53448090)
chr4 (359-423)||(42857564-42857628)
[»] chr3 (5 HSPs)
chr3 (359-423)||(50001894-50001958)
chr3 (358-423)||(31814796-31814861)
chr3 (359-423)||(14092932-14092996)
chr3 (359-423)||(40687017-40687081)
chr3 (357-421)||(13848832-13848896)
[»] chr2 (4 HSPs)
chr2 (359-423)||(27337228-27337292)
chr2 (361-423)||(362992-363054)
chr2 (359-423)||(3207251-3207315)
chr2 (359-423)||(33618107-33618171)
[»] chr8 (7 HSPs)
chr8 (361-423)||(42957845-42957907)
chr8 (359-423)||(34649641-34649705)
chr8 (385-423)||(42570741-42570779)
chr8 (359-410)||(43323592-43323643)
chr8 (359-420)||(18754004-18754065)
chr8 (359-424)||(31666203-31666268)
chr8 (359-423)||(16047327-16047391)
[»] chr5 (5 HSPs)
chr5 (359-423)||(18515675-18515739)
chr5 (359-409)||(7441021-7441071)
chr5 (359-412)||(28905568-28905621)
chr5 (359-412)||(28941963-28942016)
chr5 (359-420)||(29801702-29801763)
[»] chr6 (1 HSPs)
chr6 (358-423)||(12188432-12188497)


Alignment Details
Target: chr1 (Bit Score: 78; Significance: 3e-36; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 190 - 322
Target Start/End: Complemental strand, 19728051 - 19727918
Alignment:
Q  190 cttacatagattaaatttcacaaacaaatattttctaagttgaagtaaattttccctnnnnnnnngttg-aagtacttttttgattagatatatttttag 288  Q
    |||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||        |||| ||||| ||||||||||||||||||||||||    
T  19728051 cttacatagattaaatttcacaaaaaaataatttttaagttgaagtaaattttccctgaaaaaaagttggaagtatttttttgattagatatatttttag 19727952  T
Q  289 ggaggggcttattagtcaattcataaaacttgcc 322  Q
    | ||||| ||||||||||||||||||||||||||    
T  19727951 gtaggggtttattagtcaattcataaaacttgcc 19727918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 18 - 99
Target Start/End: Complemental strand, 19728223 - 19728142
Alignment:
Q  18 gttgttatatactcatgttaattaatatcccactctagcatctatttttggtttgtggcagccagcaacttacgagcttcaa 99  Q
    |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  19728223 gttgttatgtactcatgttaattaatatcccactgtagcatctatttttggtttgtggcagccagcaacttacgagcttcaa 19728142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 357 - 424
Target Start/End: Complemental strand, 19727881 - 19727814
Alignment:
Q  357 aaaccaaacaatacttaaaatctaccatatttttcacatctttctctcttctcatattctctctcaca 424  Q
    |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  19727881 aaaccaaacaatacttaaaatctaccatatttctcacatatttctctcttctcatattctctctcaca 19727814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 357 - 423
Target Start/End: Complemental strand, 20303587 - 20303521
Alignment:
Q  357 aaaccaaacaatacttaaaatctaccatatttttcacatctttctctcttctcatattctctctcac 423  Q
    |||||||||||||||| |||||||| |||||| |||| |||||| ||||||||| | ||||||||||    
T  20303587 aaaccaaacaatactttaaatctactatatttctcacttctttccctcttctcaaactctctctcac 20303521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 361 - 423
Target Start/End: Complemental strand, 30613122 - 30613060
Alignment:
Q  361 caaacaatacttaaaatctaccatatttttcacatctttctctcttctcatattctctctcac 423  Q
    |||||||||| | ||||| | || |||| ||||||||||||||||| ||||||||||||||||    
T  30613122 caaacaatacctcaaatccatcacatttctcacatctttctctcttttcatattctctctcac 30613060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 359 - 420
Target Start/End: Original strand, 26940368 - 26940429
Alignment:
Q  359 accaaacaatacttaaaatctaccatatttttcacatctttctctcttctcatattctctct 420  Q
    |||||||||||| | ||||||||  ||||| |||||||||||||||||||| || |||||||    
T  26940368 accaaacaatacatcaaatctactctatttctcacatctttctctcttctcgtactctctct 26940429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 359 - 420
Target Start/End: Original strand, 51048129 - 51048190
Alignment:
Q  359 accaaacaatacttaaaatctaccatatttttcacatctttctctcttctcatattctctct 420  Q
    |||||||||| | | |||| |||||||||| |||||| ||||||||||||| ||||||||||    
T  51048129 accaaacaatccatcaaatataccatatttctcacatatttctctcttctcttattctctct 51048190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 412
Target Start/End: Original strand, 16660015 - 16660068
Alignment:
Q  359 accaaacaatacttaaaatctaccatatttttcacatctttctctcttctcata 412  Q
    |||||||||||| | |||||||| |||||| |||| | ||||||||||||||||    
T  16660015 accaaacaatacatcaaatctactatatttctcacctttttctctcttctcata 16660068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 190 - 316
Target Start/End: Complemental strand, 8970188 - 8970061
Alignment:
Q  190 cttacatagattaaatttcacaaacaaatattttctaagttgaagtaaattttccctnnnnnnnn--gttgaagtacttttttgattagatatattttta 287  Q
    |||||||||||||||||||||||||||  || || ||||||||||||  ||||| ||          ||||||||| ||||||||||||||||| |||||    
T  8970188 cttacatagattaaatttcacaaacaagaatattttaagttgaagtattttttctctaaaaaaaaaagttgaagta-ttttttgattagatataatttta 8970090  T
Q  288 gggaggggcttattagtcaattcataaaa 316  Q
    || ||||| ||||||||||||||||||||    
T  8970089 ggtaggggtttattagtcaattcataaaa 8970061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 357 - 420
Target Start/End: Original strand, 10048216 - 10048279
Alignment:
Q  357 aaaccaaacaatacttaaaatctaccatatttttcacatctttctctcttctcatattctctct 420  Q
    |||||||||| ||||  ||||||||  ||||| ||||||||||||||||||||||| |||||||    
T  10048216 aaaccaaacactactctaaatctactctatttctcacatctttctctcttctcatactctctct 10048279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 361 - 423
Target Start/End: Original strand, 22753748 - 22753810
Alignment:
Q  361 caaacaatacttaaaatctaccatatttttcacatctttctctcttctcatattctctctcac 423  Q
    ||||||| | || ||||||||  ||||| ||||||||||||| ||||||||||||||||||||    
T  22753748 caaacaacattttaaatctactctatttctcacatctttctcgcttctcatattctctctcac 22753810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 420
Target Start/End: Complemental strand, 41816641 - 41816578
Alignment:
Q  357 aaaccaaacaatacttaaaatctaccatatttttcacatctttctctcttctcatattctctct 420  Q
    ||||||||||  |||  ||||||||  ||||| ||||||||||||||||||||||| |||||||    
T  41816641 aaaccaaacaccactctaaatctactctatttctcacatctttctctcttctcatactctctct 41816578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 361 - 424
Target Start/End: Original strand, 45268198 - 45268260
Alignment:
Q  361 caaacaatacttaaaatctaccatatttttcacatctttctctcttctcatattctctctcaca 424  Q
    |||||||||||  |||| |||  ||||| ||||||||| |||||||||||||||||||||||||    
T  45268198 caaacaatactccaaatatactctatttatcacatctt-ctctcttctcatattctctctcaca 45268260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 361 - 423
Target Start/End: Original strand, 16871523 - 16871585
Alignment:
Q  361 caaacaatacttaaaatctaccatatttttcacatctttctctcttctcatattctctctcac 423  Q
    ||||||| || | |||||||| |||||| | ||||||||||||||||| ||| ||||||||||    
T  16871523 caaacaacacctcaaatctactatatttcttacatctttctctcttctgatactctctctcac 16871585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 420
Target Start/End: Complemental strand, 46290529 - 46290468
Alignment:
Q  359 accaaacaatacttaaaatctaccatatttttcacatctttctctcttctcatattctctct 420  Q
    |||||||||| | | ||||||||||||||| |||  |||||||||||||||| | |||||||    
T  46290529 accaaacaatccatcaaatctaccatatttctcatctctttctctcttctcaaactctctct 46290468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 361 - 405
Target Start/End: Complemental strand, 8970027 - 8969983
Alignment:
Q  361 caaacaatacttaaaatctaccatatttttcacatctttctctct 405  Q
    |||||||||| ||||||||| ||||||| ||| ||||||||||||    
T  8970027 caaacaatacgtaaaatctatcatatttctcatatctttctctct 8969983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 423
Target Start/End: Complemental strand, 18791174 - 18791110
Alignment:
Q  359 accaaacaatacttaaaatctaccatatttttcacatctttctctcttctcatattctctctcac 423  Q
    |||||||| ||| | ||||||||  ||||| |||| |||||||||||||||||| ||| ||||||    
T  18791174 accaaacactacattaaatctactctatttctcacctctttctctcttctcatactctttctcac 18791110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 359 - 423
Target Start/End: Complemental strand, 56051266 - 56051202
Alignment:
Q  359 accaaacaatacttaaaatctaccatatttttcacatctttctctcttctcatattctctctcac 423  Q
    |||||||||||| | ||||||||| ||||| ||||||||||||||||||||||| ||||||||||    
T  56051266 accaaacaatacatcaaatctaccctatttctcacatctttctctcttctcatactctctctcac 56051202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 266 - 316
Target Start/End: Original strand, 7591503 - 7591553
Alignment:
Q  266 tttttgattagatatatttttagggaggggcttattagtcaattcataaaa 316  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  7591503 tttttgattagatataattttaggtaggggcttattagtcaattcataaaa 7591553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 361 - 424
Target Start/End: Original strand, 48589580 - 48589643
Alignment:
Q  361 caaacaatacttaaaatctaccatatttttcacatctttctctcttctcatattctctctcaca 424  Q
    |||||||||||  ||||||||  ||||| ||||||||||||||||||| |||||||||||||||    
T  48589580 caaacaatactccaaatctactctatttctcacatctttctctcttctaatattctctctcaca 48589643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 361 - 423
Target Start/End: Original strand, 39747005 - 39747067
Alignment:
Q  361 caaacaatacttaaaatctaccatatttttcacatctttctctcttctcatattctctctcac 423  Q
    |||||||||||| |||||||  |||||| |||| |||||| ||||||||| ||||||||||||    
T  39747005 caaacaatacttcaaatctaatatatttctcacttctttccctcttctcaaattctctctcac 39747067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 374 - 420
Target Start/End: Complemental strand, 39121222 - 39121176
Alignment:
Q  374 aaatctaccatatttttcacatctttctctcttctcatattctctct 420  Q
    ||||||||  ||||| |||||||||||||||||| ||||||||||||    
T  39121222 aaatctactctatttctcacatctttctctcttcacatattctctct 39121176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 420
Target Start/End: Original strand, 53448029 - 53448090
Alignment:
Q  359 accaaacaatacttaaaatctaccatatttttcacatctttctctcttctcatattctctct 420  Q
    |||||||||||| | ||||||||  ||||| |||  |||||||||||||||||| |||||||    
T  53448029 accaaacaatacattaaatctactctatttctcatctctttctctcttctcatactctctct 53448090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 423
Target Start/End: Complemental strand, 42857628 - 42857564
Alignment:
Q  359 accaaacaatacttaaaatctaccatatttttcacatctttctctcttctcatattctctctcac 423  Q
    |||||||||||| | ||||||||  ||||| || ||| ||||||||||||| || ||||||||||    
T  42857628 accaaacaatacatcaaatctactctatttctctcatatttctctcttctcttactctctctcac 42857564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 359 - 423
Target Start/End: Original strand, 50001894 - 50001958
Alignment:
Q  359 accaaacaatacttaaaatctaccatatttttcacatctttctctcttctcatattctctctcac 423  Q
    |||||||||||| | ||||||||  ||||| ||||||||||||||||||||||| ||||||||||    
T  50001894 accaaacaatacatcaaatctactctatttctcacatctttctctcttctcatactctctctcac 50001958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 358 - 423
Target Start/End: Original strand, 31814796 - 31814861
Alignment:
Q  358 aaccaaacaatacttaaaatctaccatatttttcacatctttctctcttctcatattctctctcac 423  Q
    ||||||||||||||| |||||||   |||||||||  | |||||||||||||||| ||||||||||    
T  31814796 aaccaaacaatactttaaatctattctatttttcatctttttctctcttctcatactctctctcac 31814861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 359 - 423
Target Start/End: Original strand, 14092932 - 14092996
Alignment:
Q  359 accaaacaatacttaaaatctaccatatttttcacatctttctctcttctcatattctctctcac 423  Q
    |||||||||||| ||||||||||  ||||| || |||  ||||||||||||||| ||||||||||    
T  14092932 accaaacaatacataaaatctactctatttctctcatagttctctcttctcatactctctctcac 14092996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 359 - 423
Target Start/End: Original strand, 40687017 - 40687081
Alignment:
Q  359 accaaacaatacttaaaatctaccatatttttcacatctttctctcttctcatattctctctcac 423  Q
    |||||||||||| | |||||||| |||||| |||||| ||||||||||| || | ||||||||||    
T  40687017 accaaacaatacatcaaatctactatatttctcacatatttctctcttcccacactctctctcac 40687081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 357 - 421
Target Start/End: Complemental strand, 13848896 - 13848832
Alignment:
Q  357 aaaccaaacaatacttaaaatctaccatatttttcacatctttctctcttctcatattctctctc 421  Q
    |||||||||||||| | |||||||| |||||| |||  | |||||||||||| ||| ||||||||    
T  13848896 aaaccaaacaatacctcaaatctactatatttctcatctatttctctcttcttatactctctctc 13848832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 359 - 423
Target Start/End: Complemental strand, 27337292 - 27337228
Alignment:
Q  359 accaaacaatacttaaaatctaccatatttttcacatctttctctcttctcatattctctctcac 423  Q
    |||||||||||| | ||||||| | ||||| ||||||||||||||||||||||| ||||||||||    
T  27337292 accaaacaatacatcaaatctatcctatttctcacatctttctctcttctcatactctctctcac 27337228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 361 - 423
Target Start/End: Original strand, 362992 - 363054
Alignment:
Q  361 caaacaatacttaaaatctaccatatttttcacatctttctctcttctcatattctctctcac 423  Q
    |||||||||| | |||||||  |||||| |||||||||||||||||| |||| ||||||||||    
T  362992 caaacaatacatcaaatctattatatttctcacatctttctctcttcccataatctctctcac 363054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 423
Target Start/End: Complemental strand, 3207315 - 3207251
Alignment:
Q  359 accaaacaatacttaaaatctaccatatttttcacatctttctctcttctcatattctctctcac 423  Q
    |||||||||||| | ||||||||  ||||| | |||| | |||||||||||||| ||||||||||    
T  3207315 accaaacaatacatcaaatctactctatttctaacatttctctctcttctcatactctctctcac 3207251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 423
Target Start/End: Complemental strand, 33618171 - 33618107
Alignment:
Q  359 accaaacaatacttaaaatctaccatatttttcacatctttctctcttctcatattctctctcac 423  Q
    |||||||||| | | ||||||||  ||||| |||| |||||||||||||  ||||||||||||||    
T  33618171 accaaacaatccatcaaatctactctatttctcacctctttctctcttcctatattctctctcac 33618107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 361 - 423
Target Start/End: Complemental strand, 42957907 - 42957845
Alignment:
Q  361 caaacaatacttaaaatctaccatatttttcacatctttctctcttctcatattctctctcac 423  Q
    |||||||||| | ||||| | || |||| ||||||||||||||||||||||||||||||||||    
T  42957907 caaacaatacctcaaatccatcacatttctcacatctttctctcttctcatattctctctcac 42957845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 359 - 423
Target Start/End: Original strand, 34649641 - 34649705
Alignment:
Q  359 accaaacaatacttaaaatctaccatatttttcacatctttctctcttctcatattctctctcac 423  Q
    |||||||||||| | ||||||||  ||||| |||||| |||||||||||||||| ||||||||||    
T  34649641 accaaacaatacatcaaatctactctatttctcacatttttctctcttctcatactctctctcac 34649705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 385 - 423
Target Start/End: Complemental strand, 42570779 - 42570741
Alignment:
Q  385 atttttcacatctttctctcttctcatattctctctcac 423  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  42570779 atttctcacatctttctctcttctcatattctctctcac 42570741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 410
Target Start/End: Complemental strand, 43323643 - 43323592
Alignment:
Q  359 accaaacaatacttaaaatctaccatatttttcacatctttctctcttctca 410  Q
    |||||||||||| | ||||||| || |||| |||||||||||||||||||||    
T  43323643 accaaacaatacctcaaatctatcacatttctcacatctttctctcttctca 43323592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 420
Target Start/End: Complemental strand, 18754065 - 18754004
Alignment:
Q  359 accaaacaatacttaaaatctaccatatttttcacatctttctctcttctcatattctctct 420  Q
    |||||||||||| | |||||||  ||||||||||| | |||||||||||| ||| |||||||    
T  18754065 accaaacaatacatcaaatctattatatttttcacctttttctctcttcttatactctctct 18754004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 424
Target Start/End: Complemental strand, 31666268 - 31666203
Alignment:
Q  359 accaaacaatacttaaaatctaccatatttttcacatctttctctcttctcatattctctctcaca 424  Q
    |||||||||||| | ||||||||   |||||||||||  |||||||||| |||| |||||||||||    
T  31666268 accaaacaatacatcaaatctactccatttttcacatacttctctcttcccatactctctctcaca 31666203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 423
Target Start/End: Original strand, 16047327 - 16047391
Alignment:
Q  359 accaaacaatacttaaaatctaccatatttttcacatctttctctcttctcatattctctctcac 423  Q
    |||||||||||| | ||||||||  ||||| |||| ||||||||||||| | || ||||||||||    
T  16047327 accaaacaatacctcaaatctactctatttctcacttctttctctcttcccttactctctctcac 16047391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 359 - 423
Target Start/End: Complemental strand, 18515739 - 18515675
Alignment:
Q  359 accaaacaatacttaaaatctaccatatttttcacatctttctctcttctcatattctctctcac 423  Q
    |||||||||||| | ||||||||  ||||| |||  |||||||||||||||||||||| ||||||    
T  18515739 accaaacaatacattaaatctactctatttctcatctctttctctcttctcatattctttctcac 18515675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 409
Target Start/End: Original strand, 7441021 - 7441071
Alignment:
Q  359 accaaacaatacttaaaatctaccatatttttcacatctttctctcttctc 409  Q
    |||||||||||| | ||||||||| |||||| ||| |||||||||||||||    
T  7441021 accaaacaataccttaaatctaccctattttgcacctctttctctcttctc 7441071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 412
Target Start/End: Original strand, 28905568 - 28905621
Alignment:
Q  359 accaaacaatacttaaaatctaccatatttttcacatctttctctcttctcata 412  Q
    |||||||||||| | |||||||| |||||| |||| | ||||||||||||||||    
T  28905568 accaaacaatacatcaaatctactatatttctcacctttttctctcttctcata 28905621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 412
Target Start/End: Original strand, 28941963 - 28942016
Alignment:
Q  359 accaaacaatacttaaaatctaccatatttttcacatctttctctcttctcata 412  Q
    |||||||||||| | |||||||| |||||| |||| | ||||||||||||||||    
T  28941963 accaaacaatacatcaaatctactatatttctcacctttttctctcttctcata 28942016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 420
Target Start/End: Complemental strand, 29801763 - 29801702
Alignment:
Q  359 accaaacaatacttaaaatctaccatatttttcacatctttctctcttctcatattctctct 420  Q
    |||||||||||| | ||||||||  |||||||||  | |||||||||||||||| |||||||    
T  29801763 accaaacaatacatcaaatctactctatttttcatctttttctctcttctcatactctctct 29801702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 423
Target Start/End: Original strand, 12188432 - 12188497
Alignment:
Q  358 aaccaaacaatacttaaaatctaccatatttttcacatctttctctcttctcatattctctctcac 423  Q
    ||||||||||||| | |||||||   |||||||||  | |||||||||||||||| ||||||||||    
T  12188432 aaccaaacaataccttaaatctattctatttttcatttttttctctcttctcatactctctctcac 12188497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University