View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12261_low_12 (Length: 415)
Name: NF12261_low_12
Description: NF12261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12261_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 180; Significance: 4e-97; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 171 - 399
Target Start/End: Complemental strand, 3679978 - 3679736
Alignment:
| Q |
171 |
ttggatgaaggttggatttcgcttatgtctgatgatgttgaatatttcagcttattctggccacctcctgtcgaaagctgaattcgtcgctgagtatgtt |
270 |
Q |
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| T |
3679978 |
ttggatgaaggtcggatttcgcttatgtctgatgatgctgaatatttcagcttattctggccacctcctgtcgaaagctgaattcgtcactgagtatgtt |
3679879 |
T |
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| Q |
271 |
atcatgcattgaaattaaaagattt--------------tatagcttatgttgttactttggatattttcaaaagttgaaatccgtgtgtggacttcaat |
356 |
Q |
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| T |
3679878 |
atcatgcattgaaattaaaagattttaatgtgatcgtgatatagcttatgttgttactttggatattttcaaaagttgaaatccgtgtgtggacttcaat |
3679779 |
T |
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| Q |
357 |
atcttcaaaagttccttcatttgacttgttgatttataccttc |
399 |
Q |
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| T |
3679778 |
atcttcaaaagttccttcatttgacttgttgatttataacttc |
3679736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 171 - 297
Target Start/End: Complemental strand, 3695604 - 3695475
Alignment:
| Q |
171 |
ttggatgaaggttggatttcgcttatgtctgatgatgttgaatatttcagcttattctggccacc-----tcctgtcgaaagctgaattcgtcgctgagt |
265 |
Q |
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| T |
3695604 |
ttggatgaaggtaggatttcgcttatgtctaatgatcctgaatattccaacttgttctggccaccttgcattgtgtcgaaagctgaaatcgtcattgagt |
3695505 |
T |
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| Q |
266 |
atgttatcatgcattgaaattaaaagatttta |
297 |
Q |
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| T |
3695504 |
atgttatcatgcattg--attaaaagatttta |
3695475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 3680208 - 3680156
Alignment:
| Q |
16 |
gcactgatcccaatagcaaaatgtatatgcaagaaatctcacatactggttatat |
70 |
Q |
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| T |
3680208 |
gcactgatcccaatagcaaaatgtatatgcaagaaa--tcacatactggttatat |
3680156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 350 - 394
Target Start/End: Complemental strand, 3676118 - 3676074
Alignment:
| Q |
350 |
cttcaatatcttcaaaagttccttcatttgacttgttgatttata |
394 |
Q |
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| T |
3676118 |
cttcaatatcttcataagttccttcatttgacttgttgatttata |
3676074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 355 - 394
Target Start/End: Complemental strand, 3695326 - 3695287
Alignment:
| Q |
355 |
atatcttcaaaagttccttcatttgacttgttgatttata |
394 |
Q |
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| T |
3695326 |
atatcttcataagttccttcatttgacttgttgatttata |
3695287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 329 - 377
Target Start/End: Complemental strand, 3650497 - 3650449
Alignment:
| Q |
329 |
aagttgaaatccgtgtgtggacttcaatatcttcaaaagttccttcatt |
377 |
Q |
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| T |
3650497 |
aagttgaaatccgtatctggacttcaatatcttcctaagttccttcatt |
3650449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 329 - 377
Target Start/End: Original strand, 3707014 - 3707062
Alignment:
| Q |
329 |
aagttgaaatccgtgtgtggacttcaatatcttcaaaagttccttcatt |
377 |
Q |
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| T |
3707014 |
aagttgaaatccgtatctggacttcaatatcttcctaagttccttcatt |
3707062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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