View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12261_low_14 (Length: 366)
Name: NF12261_low_14
Description: NF12261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12261_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 10 - 348
Target Start/End: Original strand, 34958079 - 34958413
Alignment:
| Q |
10 |
gcagagaattgtggtcctgttggttggtgcgatctcaaccacagttgctttgtggttaatgatatgaaatagctttaatatgtatttggtaatctaaaat |
109 |
Q |
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| T |
34958079 |
gcagagaattgtggtcctattggttggtgcgatctcaaccacagttgctttgtggttaatgatatgaaatagctttaatatgt----ggtaatctaaaat |
34958174 |
T |
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| Q |
110 |
gcgtttaggaccnnnnnnnaaaaaccgtatgtaaatgtatatacagcaccacgtacataacaaatagattagatacacatgtttggttttaaggtgtagt |
209 |
Q |
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| T |
34958175 |
gcgtttaggacctttttttaaaaaccgtatgtaaatgtatatacagcaccacgtacataacaaatagattagatacacatgtttggttttaaggtgtagt |
34958274 |
T |
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| Q |
210 |
tttttaaagattgaaaaacgattaaatttgattaaacatggatactatatatgtagatattacagtttacagatatatcttttatgagaataattaagaa |
309 |
Q |
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| T |
34958275 |
tttttaaagattgaaaaacgattaaatttgattaaacatggatactatatatgtagatattacagtttacagatatatcttttatgagaataattaagaa |
34958374 |
T |
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| Q |
310 |
atatgttaatgctcggtgagactcctcggagcttaaaca |
348 |
Q |
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| T |
34958375 |
atatgttaatgctcggtgagactcctcggagcttaaaca |
34958413 |
T |
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