View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12261_low_17 (Length: 328)
Name: NF12261_low_17
Description: NF12261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12261_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 20 - 312
Target Start/End: Complemental strand, 42467337 - 42467045
Alignment:
| Q |
20 |
gaaaattaatcacaacagataaaaatatataaccgtggtgtatttaaacaagtaaattaaaaggatgagcactgatggcaacatacttcaatgaaaattg |
119 |
Q |
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| T |
42467337 |
gaaaattaatcacaacagataaaaatatataaccgtggtgtatttaaacaagtaaattaaaaggatgagcactgatggcaacatacttcaatgaaaattg |
42467238 |
T |
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| Q |
120 |
acatgtgtggaataggttattccagcaccccagttggaaggagcaacattccaagctattatagtttctttggttgtgtaagaagtaatcttgaaagaaa |
219 |
Q |
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| T |
42467237 |
acatgtgtggaataggttagtccagcaccccagttggaaggagcaacattccaagctattatagtttctttggttgtgtaagaagtaatcttgaaagaaa |
42467138 |
T |
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| Q |
220 |
gagtttggccactaagtgttgcaaatgcttggtaagaagcaccccaattgtggctcatgctaatccatcctgttctacttcctttaacccaca |
312 |
Q |
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| T |
42467137 |
gagtttggccactaagtgttgcaaatgcttggtaagaagcaccccaattgtggctcatgctaatccatcctgttctacttcctttaacccaca |
42467045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 153 - 304
Target Start/End: Original strand, 3183511 - 3183662
Alignment:
| Q |
153 |
ttggaaggagcaacattccaagctattatagtttctttggttgtgtaagaagtaatcttgaaagaaagagtttggccactaagtgttgcaaatgcttggt |
252 |
Q |
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|||||||||||||||||||| || || ||||| || || || ||||| ||||||| | |||||||||||| ||| |||| ||||||||||||||||||| |
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| T |
3183511 |
ttggaaggagcaacattccatgcaataatagtctccttagtggtgtatgaagtaagcctgaaagaaagagcttgaccacctagtgttgcaaatgcttggt |
3183610 |
T |
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| Q |
253 |
aagaagcaccccaattgtggctcatgctaatccatcctgttctacttccttt |
304 |
Q |
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| T |
3183611 |
aggaagcaccccagttatggctcatcttaatccatcctgttctgcttccttt |
3183662 |
T |
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