View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12261_low_19 (Length: 302)

Name: NF12261_low_19
Description: NF12261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12261_low_19
NF12261_low_19
[»] chr7 (8 HSPs)
chr7 (24-165)||(27257288-27257429)
chr7 (24-166)||(40864280-40864424)
chr7 (87-166)||(40863959-40864038)
chr7 (32-165)||(9649844-9649980)
chr7 (101-165)||(11016794-11016858)
chr7 (24-135)||(23866792-23866902)
chr7 (19-53)||(9010410-9010444)
chr7 (23-62)||(19641358-19641397)
[»] chr5 (16 HSPs)
chr5 (24-166)||(21322920-21323062)
chr5 (24-165)||(31732620-31732760)
chr5 (24-130)||(13300405-13300511)
chr5 (28-168)||(24435061-24435199)
chr5 (24-166)||(562535-562678)
chr5 (24-166)||(557763-557908)
chr5 (24-135)||(41997709-41997822)
chr5 (36-148)||(2452036-2452149)
chr5 (87-150)||(8041158-8041221)
chr5 (24-165)||(12044014-12044159)
chr5 (24-166)||(36941146-36941291)
chr5 (24-135)||(32460459-32460572)
chr5 (87-148)||(36949819-36949880)
chr5 (24-166)||(42002500-42002646)
chr5 (24-165)||(36936393-36936537)
chr5 (24-170)||(3666943-3667088)
[»] chr4 (7 HSPs)
chr4 (24-165)||(3992653-3992794)
chr4 (29-166)||(7899837-7899973)
chr4 (24-166)||(34561476-34561618)
chr4 (24-150)||(41817854-41817980)
chr4 (32-165)||(13520869-13521005)
chr4 (24-164)||(31297409-31297552)
chr4 (24-79)||(39320633-39320688)
[»] chr2 (6 HSPs)
chr2 (24-165)||(6296796-6296937)
chr2 (28-145)||(28856159-28856276)
chr2 (24-166)||(10159600-10159744)
chr2 (87-150)||(17329278-17329341)
chr2 (24-79)||(30659211-30659265)
chr2 (24-53)||(19588682-19588711)
[»] scaffold0041 (1 HSPs)
scaffold0041 (24-165)||(34605-34746)
[»] scaffold0070 (2 HSPs)
scaffold0070 (24-166)||(59477-59618)
scaffold0070 (24-166)||(63679-63820)
[»] chr3 (11 HSPs)
chr3 (24-165)||(10585066-10585206)
chr3 (24-166)||(8070746-8070889)
chr3 (24-169)||(3034711-3034859)
chr3 (98-166)||(45903238-45903306)
chr3 (88-166)||(632069-632147)
chr3 (24-135)||(8884237-8884350)
chr3 (24-166)||(3673633-3673778)
chr3 (24-135)||(8888983-8889096)
chr3 (27-107)||(45903518-45903598)
chr3 (24-166)||(3693687-3693832)
chr3 (24-54)||(632003-632033)
[»] chr8 (10 HSPs)
chr8 (24-166)||(8330261-8330403)
chr8 (24-165)||(37772785-37772928)
chr8 (28-147)||(25361624-25361742)
chr8 (24-165)||(34817620-34817763)
chr8 (44-166)||(21959473-21959595)
chr8 (24-135)||(43301658-43301771)
chr8 (24-165)||(31448747-31448892)
chr8 (24-166)||(4241962-4242107)
chr8 (24-165)||(4237224-4237368)
chr8 (121-166)||(25361577-25361622)
[»] chr6 (1 HSPs)
chr6 (26-165)||(6111615-6111755)
[»] scaffold0060 (2 HSPs)
scaffold0060 (24-166)||(51795-51937)
scaffold0060 (24-165)||(46857-46994)
[»] scaffold0061 (1 HSPs)
scaffold0061 (37-166)||(48841-48970)
[»] scaffold0017 (1 HSPs)
scaffold0017 (37-166)||(149664-149793)
[»] chr1 (4 HSPs)
chr1 (24-165)||(41096835-41096974)
chr1 (24-167)||(33055850-33055993)
chr1 (24-169)||(3095156-3095304)
chr1 (24-116)||(40232321-40232414)
[»] scaffold0484 (2 HSPs)
scaffold0484 (28-147)||(7988-8106)
scaffold0484 (121-166)||(8108-8153)
[»] scaffold0015 (1 HSPs)
scaffold0015 (44-166)||(213253-213375)
[»] scaffold0182 (1 HSPs)
scaffold0182 (24-165)||(8764-8909)
[»] scaffold0045 (1 HSPs)
scaffold0045 (24-135)||(83975-84088)
[»] scaffold0628 (1 HSPs)
scaffold0628 (87-166)||(5798-5878)


Alignment Details
Target: chr7 (Bit Score: 97; Significance: 1e-47; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 24 - 165
Target Start/End: Original strand, 27257288 - 27257429
Alignment:
24 acacccccactatataaacactactaatgtgtgattcatctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaaat 123  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||       ||||||||||||||||||||||||||||| ||| |||    
27257288 acacccccactatataaacactactaatgtgtgatccatctgatgtgggacttccacttttttcaattcacactacactagttctacccattgtgggaat 27257387  T
124 ttgtgtttagtcaattactcaatttcctcgtatgttccaaca 165  Q
    ||||||||||||||||||||||||||| | ||||||||||||    
27257388 ttgtgtttagtcaattactcaatttccacatatgttccaaca 27257429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 24 - 166
Target Start/End: Complemental strand, 40864424 - 40864280
Alignment:
24 acacccccactatataaacactactaatgtgtgattcatctgatgtaggacttccannnnnnn--caattcacactacactagttctacccattatggaa 121  Q
    ||||| ||||||||||||||||||||||||||||| |||| ||| | |||||||||         ||||||||||||||||||||||||||||| ||| |    
40864424 acacctccactatataaacactactaatgtgtgatccatccgatctgggacttccatttttttttcaattcacactacactagttctacccattgtggga 40864325  T
122 atttgtgtttagtcaattactcaatttcctcgtatgttccaacaa 166  Q
    ||||||||||||||||||||||||||||| | |||||||||||||    
40864324 atttgtgtttagtcaattactcaatttccacatatgttccaacaa 40864280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 87 - 166
Target Start/End: Complemental strand, 40864038 - 40863959
Alignment:
87 caattcacactacactagttctacccattatggaaatttgtgtttagtcaattactcaatttcctcgtatgttccaacaa 166  Q
    ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| | |||||||||||||    
40864038 caattcacactacactagttctacccattgtgggaatttgtgtttagtcaattactcaatttccacatatgttccaacaa 40863959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 32 - 165
Target Start/End: Complemental strand, 9649980 - 9649844
Alignment:
32 actatataaacactactaatgtgtga--ttcatctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaaatttgtgt 129  Q
    |||||||||||||||||||||||||   |||||| ||||| | |||||||       |||||||||| ||||||||||||||||  |||| |||||||||    
9649980 actatataaacactactaatgtgtgtatttcatccgatgtggaacttccacttttttcaattcacacaacactagttctacccaacatgggaatttgtgt 9649881  T
130 ttagtcaatt-actcaatttcctcgtatgttccaaca 165  Q
    ||||||  || ||||||||||| |  |||||||||||    
9649880 ttagtcttttaactcaatttccacacatgttccaaca 9649844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 101 - 165
Target Start/End: Complemental strand, 11016858 - 11016794
Alignment:
101 ctagttctacccattatggaaatttgtgtttagtcaattactcaatttcctcgtatgttccaaca 165  Q
    ||||||||||| ||||||| ||||||| |||||||||||||||||||||| |  |||||||||||    
11016858 ctagttctacctattatgggaatttgtatttagtcaattactcaatttccacacatgttccaaca 11016794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 24 - 135
Target Start/End: Original strand, 23866792 - 23866902
Alignment:
24 acacccccactatataaacactactaatgtgtgattcatctgatgtaggacttccannnnnnn-caattcacactacactagttctacccattatggaaa 122  Q
    ||||||||| ||||||||||||||||||||||  | ||||  |||| |||||||||        |||||||||| ||||||||||||||||  |||| ||    
23866792 acacccccattatataaacactactaatgtgt--tccatccaatgtgggacttccactttttttcaattcacacaacactagttctacccaacatgggaa 23866889  T
123 tttgtgtttagtc 135  Q
    |||||||||||||    
23866890 tttgtgtttagtc 23866902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 53
Target Start/End: Original strand, 9010410 - 9010444
Alignment:
19 tcatcacacccccactatataaacactactaatgt 53  Q
    |||||||||||||||||||||||||||||||||||    
9010410 tcatcacacccccactatataaacactactaatgt 9010444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 62
Target Start/End: Original strand, 19641358 - 19641397
Alignment:
23 cacacccccactatataaacactactaatgtgtgattcat 62  Q
    ||||||||| ||||||||||||||||||| ||||||||||    
19641358 cacacccccgctatataaacactactaatatgtgattcat 19641397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 94; Significance: 7e-46; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 24 - 166
Target Start/End: Complemental strand, 21323062 - 21322920
Alignment:
24 acacccccactatataaacactactaatgtgtgattcatctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaaat 123  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||       ||||||||||||||||||||||||||||| ||| |||    
21323062 acacccccactatataaacactactaatgtgtgatccatccgatgtgggacttccacttttttcaattcacactacactagttctacccattgtgggaat 21322963  T
124 ttgtgtttagtcaattactcaatttcctcgtatgttccaacaa 166  Q
    ||||||||||||||||||||||||||| | |||||||||||||    
21322962 ttgtgtttagtcaattactcaatttccacatatgttccaacaa 21322920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 24 - 165
Target Start/End: Original strand, 31732620 - 31732760
Alignment:
24 acacccccactatataaacactactaatgtgtgattcatctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaaat 123  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||       ||||||||||||||||||||||| ||||| ||| |||    
31732620 acacccccactatataaacactactaatgtgtgatccatc-gatgtgggacttccatttttttcaattcacactacactagttctatccattgtgggaat 31732718  T
124 ttgtgtttagtcaattactcaatttcctcgtatgttccaaca 165  Q
    ||||||||||||||||||||||||||| | ||||||||||||    
31732719 ttgtgtttagtcaattactcaatttccacatatgttccaaca 31732760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 24 - 130
Target Start/End: Complemental strand, 13300511 - 13300405
Alignment:
24 acacccccactatataaacactactaatgtgtgattcatctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaaat 123  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||       ||||||||||||||||||||||||||||| ||| |||    
13300511 acacccccactatataaacactactaatgtgtgatccatctgatgtgggacttccacttttttcaattcacactacactagttctacccattgtgggaat 13300412  T
124 ttgtgtt 130  Q
    |||||||    
13300411 ttgtgtt 13300405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 28 - 168
Target Start/End: Complemental strand, 24435199 - 24435061
Alignment:
28 ccccactatataaacactactaatgtgtgattcatctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaaatttgt 127  Q
    ||||| ||||||||||||||||||||||||| |||  || ||  |||||||        ||||||||||||||||||||||||||||| ||| |||||||    
24435199 ccccattatataaacactactaatgtgtgatccattcgaagtgagacttcc--ttttttcaattcacactacactagttctacccattgtgggaatttgt 24435102  T
128 gtttagtcaattactcaatttcctcgtatgttccaacaaaa 168  Q
    ||||||||||||||||||||||| | |||||||||||||||    
24435101 gtttagtcaattactcaatttccacatatgttccaacaaaa 24435061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 24 - 166
Target Start/End: Original strand, 562535 - 562678
Alignment:
24 acacccccactatataaacactactaatgtgtgattcatctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaaat 123  Q
    ||||||||||||||||||||||||||||||||| | |||| ||||| |||||||||       |||||||||| ||||||||||||||||  |||| |||    
562535 acacccccactatataaacactactaatgtgtgttccatccgatgtgggacttcca-ctttttcaattcacacaacactagttctacccaacatgggaat 562633  T
124 ttgtgtttagtcaatt--actcaatttcctcgtatgttccaacaa 166  Q
    ||||||||||||  ||  ||||||||||| |  ||||||||||||    
562634 ttgtgtttagtctttttaactcaatttccacacatgttccaacaa 562678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 24 - 166
Target Start/End: Original strand, 557763 - 557908
Alignment:
24 acacccccactatataaacactactaatgtgtgatt--catctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaa 121  Q
    |||||||||||||||||||||||||||||||||  |  |||| ||||| |||||||||       |||||||||| ||||||||||||||||  |||| |    
557763 acacccccactatataaacactactaatgtgtgtgttccatccgatgtgggacttccacttttt-caattcacacaacactagttctacccaacatggga 557861  T
122 atttgtgtttagtcaatt--actcaatttcctcgtatgttccaacaa 166  Q
    ||||||||||||||  ||  ||||||||||| |  ||||||||||||    
557862 atttgtgtttagtctttttaactcaatttccacacatgttccaacaa 557908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 24 - 135
Target Start/End: Original strand, 41997709 - 41997822
Alignment:
24 acacccccactatataaacactactaatgtgtgatt--catctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaa 121  Q
    ||||||||| |||||||||||||||||||||||  |  |||| ||||| |||||||||       |||||||||| ||||||||||||||||  |||| |    
41997709 acacccccaatatataaacactactaatgtgtgtgttccatccgatgtgggacttccacttttttcaattcacacaacactagttctacccaacatggga 41997808  T
122 atttgtgtttagtc 135  Q
    ||||||||||||||    
41997809 atttgtgtttagtc 41997822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 36 - 148
Target Start/End: Original strand, 2452036 - 2452149
Alignment:
36 tataaacactactaatgtgtgattcatctgatgtaggacttccannnnnnn-caattcacactacactagttctacccattatggaaatttgtgtttagt 134  Q
    ||||||||||||||||||||||| |||| ||| |  ||||||||        ||||||| |||||| || |||||||| |||||| ||||||||||||||    
2452036 tataaacactactaatgtgtgatccatccgatatgagacttccactttttttcaattcatactacattaattctacccgttatgggaatttgtgtttagt 2452135  T
135 caattactcaattt 148  Q
    ||||||||||||||    
2452136 caattactcaattt 2452149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 87 - 150
Target Start/End: Complemental strand, 8041221 - 8041158
Alignment:
87 caattcacactacactagttctacccattatggaaatttgtgtttagtcaattactcaatttcc 150  Q
    |||||||||||| ||||||| |||||| ||||||| ||||| ||||||||||||||||||||||    
8041221 caattcacactatactagttgtacccactatggaattttgtatttagtcaattactcaatttcc 8041158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 24 - 165
Target Start/End: Complemental strand, 12044159 - 12044014
Alignment:
24 acacccccactatataaacactactaatgtgtgatt--catctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaa 121  Q
    |||||||||||||||||||||||||||||||||  |  |||| ||||  |||||| ||       |||||||||| ||||||||||||||||  |||| |    
12044159 acacccccactatataaacactactaatgtgtgtgttccatccgatgagggactttcacttttttcaattcacacaacactagttctacccaacatggga 12044060  T
122 atttgtgtttagtcaatt--actcaatttcctcgtatgttccaaca 165  Q
    ||||||||||||||  ||  ||||||||||| |  |||||||||||    
12044059 atttgtgtttagtctttttaactcaatttccacacatgttccaaca 12044014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 24 - 166
Target Start/End: Complemental strand, 36941291 - 36941146
Alignment:
24 acacccccactatataaacactactaatg--tgtgattcatctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaa 121  Q
    |||||||||||||||||||||||||||||  |||| | |||| ||||| |||||||||       |||||||||  ||||||||||||||||  |||| |    
36941291 acacccccactatataaacactactaatgtgtgtgttccatccgatgtgggacttcca-ctttttcaattcacagaacactagttctacccaacatggga 36941193  T
122 atttgtgtttagtcaatt--actcaatttcctcgtatgttccaacaa 166  Q
    ||||||||||||||  ||  ||||||||||| |  ||||||||||||    
36941192 atttgtgtttagtctgtttaactcaatttccacacatgttccaacaa 36941146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 24 - 135
Target Start/End: Complemental strand, 32460572 - 32460459
Alignment:
24 acacccccactatataaacactactaatgtgtgatt--catctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaa 121  Q
    |||||||||||||||||||||||||||||||||  |  |||| ||||| | |||||||       |||||||||| ||||||||||||||||  |||| |    
32460572 acacccccactatataaacactactaatgtgtgtgttccatccgatgtggtacttccacttttttcaattcacacaacactagttctacccaacatggga 32460473  T
122 atttgtgtttagtc 135  Q
    ||||||| ||||||    
32460472 atttgtgattagtc 32460459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 87 - 148
Target Start/End: Original strand, 36949819 - 36949880
Alignment:
87 caattcacactacactagttctacccattatggaaatttgtgtttagtcaattactcaattt 148  Q
    |||||||||||||||||||||  || ||||||  |||||||||||||| |||||||||||||    
36949819 caattcacactacactagttccgcctattatgagaatttgtgtttagttaattactcaattt 36949880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 166
Target Start/End: Original strand, 42002500 - 42002646
Alignment:
24 acacccccactatataaacactactaatgtgtgatt--catctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaa 121  Q
    |||||| || |||||||||||||||||||||||  |  |||| ||||| |||||||||       |||||||||| ||||||||||||||||  ||   |    
42002500 acaccctcaatatataaacactactaatgtgtgtgttccatccgatgtgggacttccacttttttcaattcacacaacactagttctacccaacatatga 42002599  T
122 atttgtgtttagtcaatt--actcaatttcctcgtatgttccaacaa 166  Q
    ||||||||||||||  ||  ||||||||||| |  ||||||||||||    
42002600 atttgtgtttagtctttttaactcaatttccacacatgttccaacaa 42002646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 165
Target Start/End: Complemental strand, 36936537 - 36936393
Alignment:
24 acacccccactatataaacactactaatg--tgtgattcatctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaa 121  Q
    ||||||| |||||||||||||||||||||  |||| | |||  |||||  ||||||||       |||||||||| ||||||||||||||||  |||| |    
36936537 acacccctactatataaacactactaatgtgtgtgttccattcgatgtgagacttcca-ctgtttcaattcacacaacactagttctacccaacatggga 36936439  T
122 atttgtgtttagtcaatt--actcaatttcctcgtatgttccaaca 165  Q
    ||||||||||||||  ||  ||||||||||| |  |||||||||||    
36936438 atttgtgtttagtctgtttaactcaatttccacacatgttccaaca 36936393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 24 - 170
Target Start/End: Original strand, 3666943 - 3667088
Alignment:
24 acacccccactatataaacactactaatgtgtgattcatctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaaat 123  Q
    ||||||||||||||  |||||||||||||  || | |||| ||||| |||||||||       ||||| |||| |||||| |||||| ||  ||| ||||    
3666943 acacccccactata--aacactactaatgcttgttccatccgatgtgggacttccacctttttcaatttacacaacactatttctacacaacatgaaaat 3667040  T
124 ttgtgtttagtc-aattactcaatttcctcgtatgttccaacaaaaac 170  Q
    ||||||||||||   ||||||||||||| |  ||||||||||| ||||    
3667041 ttgtgtttagtctttttactcaatttccacacatgttccaacataaac 3667088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 6e-43; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 24 - 165
Target Start/End: Complemental strand, 3992794 - 3992653
Alignment:
24 acacccccactatataaacactactaatgtgtgattcatctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaaat 123  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||       |||||||||| |||||||||||||||||| ||| |||    
3992794 acacccccactatataaacactactaatgtgtgatccatccgatgtgggacttccacctttttcaattcacaccacactagttctacccattgtgggaat 3992695  T
124 ttgtgtttagtcaattactcaatttcctcgtatgttccaaca 165  Q
    ||||||||||||||||||||||||||| | ||||||||||||    
3992694 ttgtgtttagtcaattactcaatttccgcatatgttccaaca 3992653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 29 - 166
Target Start/End: Complemental strand, 7899973 - 7899837
Alignment:
29 cccactatataaacactactaatgtgtgattcatctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaaatttgtg 128  Q
    |||||||||||||||||||||||||||||| ||| |||||| |||||||||       |||||||||| |||||||||||||||||| ||| ||||||||    
7899973 cccactatataaacactactaatgtgtgatccat-tgatgtgggacttccacttttttcaattcacaccacactagttctacccattgtgggaatttgtg 7899875  T
129 tttagtcaattactcaatttcctcgtatgttccaacaa 166  Q
    |||||||||||||||||||||| | |||||||||||||    
7899874 tttagtcaattactcaatttccacatatgttccaacaa 7899837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 24 - 166
Target Start/End: Original strand, 34561476 - 34561618
Alignment:
24 acacccccactatataaacactactaatgtgtgattcatctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaaat 123  Q
    |||||||||||||||||| |||||||||||||||| |||| || || |||||||||       |||||||||||| |||| ||||||||||||| | |||    
34561476 acacccccactatataaatactactaatgtgtgatccatccgacgtgggacttccacttttttcaattcacactatactaattctacccattataggaat 34561575  T
124 ttgtgtttagtcaattactcaatttcctcgtatgttccaacaa 166  Q
    ||||||||||||||||||||||||||| |  ||||||||||||    
34561576 ttgtgtttagtcaattactcaatttccacaaatgttccaacaa 34561618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 24 - 150
Target Start/End: Original strand, 41817854 - 41817980
Alignment:
24 acacccccactatataaacactactaatgtgtgattcatctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaaat 123  Q
    |||||||||||||||||||||||||||| |||||| |||| ||||| | |||||||       |||||||||||||| || ||||||||||| | | |||    
41817854 acacccccactatataaacactactaatatgtgatccatccgatgtggaacttccacttttttcaattcacactacattaattctacccattgtaggaat 41817953  T
124 ttgtgtttagtcaattactcaatttcc 150  Q
    ||||||||| |||||||||||||||||    
41817954 ttgtgtttaatcaattactcaatttcc 41817980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 32 - 165
Target Start/End: Complemental strand, 13521005 - 13520869
Alignment:
32 actatataaacactactaatgtgtga--ttcatctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaaatttgtgt 129  Q
    |||||||||||||||||||||||||   |||||| ||||| | |||||||       |||||||||| ||||||||||||||||  |||| |||||||||    
13521005 actatataaacactactaatgtgtgtatttcatccgatgtggaacttccacttttttcaattcacacaacactagttctacccaacatgggaatttgtgt 13520906  T
130 ttagtcaatt-actcaatttcctcgtatgttccaaca 165  Q
    ||||||  || ||||||||||| |  |||||||||||    
13520905 ttagtcttttaactcaatttccacacatgttccaaca 13520869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 164
Target Start/End: Complemental strand, 31297552 - 31297409
Alignment:
24 acacccccactatataaacactactaatgtgtgatt--catctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaa 121  Q
    |||||||||||||||||||| ||| ||||||||  |  |||| ||||||| |||||||       |||||||||| ||||||||||||||||  |||  |    
31297552 acacccccactatataaacattacaaatgtgtgtgttccatccgatgtagaacttccacttttt-caattcacacaacactagttctacccaacatgaga 31297454  T
122 atttgtgtttag--tcaattactcaatttcctcgtatgttccaac 164  Q
    ||||||||||||  |   ||||||||||||| || ||||||||||    
31297453 atttgtgtttagccttttttactcaatttccacgcatgttccaac 31297409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 39320633 - 39320688
Alignment:
24 acacccccactatataaacactactaatgtgtgattcatctgatgtaggacttcca 79  Q
    |||||||||||||||||||| ||||||||||||||  |||  |||||| |||||||    
39320633 acacccccactatataaacattactaatgtgtgatctatccaatgtagaacttcca 39320688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 6e-43; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 24 - 165
Target Start/End: Complemental strand, 6296937 - 6296796
Alignment:
24 acacccccactatataaacactactaatgtgtgattcatctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaaat 123  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||| || ||||||       ||||||||||||||||||||||||||||| ||| |||    
6296937 acacccccactatataaacactactaatgtgtgatccatccgatgtgggtcttccacttttttcaattcacactacactagttctacccattgtgggaat 6296838  T
124 ttgtgtttagtcaattactcaatttcctcgtatgttccaaca 165  Q
    ||||||||||||||||||||||||||| | ||||||||||||    
6296837 ttgtgtttagtcaattactcaatttccacatatgttccaaca 6296796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 28 - 145
Target Start/End: Original strand, 28856159 - 28856276
Alignment:
28 ccccactatataaacactactaatgtgtgattcatctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaaatttgt 127  Q
    |||||| |||||||||||||||||||||||| |||||||||| |||||||||       |||||||||||||| |||||||||||||| ||  ||||| |    
28856159 ccccaccatataaacactactaatgtgtgatccatctgatgtgggacttccacttttttcaattcacactacattagttctacccattgtgtgaatttat 28856258  T
128 gtttagtcaattactcaa 145  Q
    ||||||||||||||||||    
28856259 gtttagtcaattactcaa 28856276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 24 - 166
Target Start/End: Complemental strand, 10159744 - 10159600
Alignment:
24 acacccccactatataaacactactaatgtgtgattcatctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaaat 123  Q
    |||||||||||||||||||||||||||| |||| | |||| ||||| |||||||||       |||||||||| |||||||||||||| |  |||| |||    
10159744 acacccccactatataaacactactaatatgtgttccatccgatgtgggacttccacttttttcaattcacacaacactagttctacctaacatgggaat 10159645  T
124 ttgtgtttagtcaatt--actcaatttcctcgtatgttccaacaa 166  Q
    ||||||||||||  ||  ||||||||||| |  ||||||||||||    
10159644 ttgtgtttagtctttttaactcaatttccacagatgttccaacaa 10159600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 87 - 150
Target Start/End: Original strand, 17329278 - 17329341
Alignment:
87 caattcacactacactagttctacccattatggaaatttgtgtttagtcaattactcaatttcc 150  Q
    ||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
17329278 caattcacattacaatagttctacccattatggaaatttatgtttagtcaattactcaatttcc 17329341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 30659211 - 30659265
Alignment:
24 acacccccactatataaacactactaatgtgtgattcatctgatgtaggacttcca 79  Q
    |||||||||||||||||||||||||||||| || | |||| ||||| |||||||||    
30659211 acacccccactatataaacactactaatgt-tgttccatccgatgtgggacttcca 30659265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 53
Target Start/End: Complemental strand, 19588711 - 19588682
Alignment:
24 acacccccactatataaacactactaatgt 53  Q
    ||||||||||||||||||||||||||||||    
19588711 acacccccactatataaacactactaatgt 19588682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 24 - 165
Target Start/End: Complemental strand, 34746 - 34605
Alignment:
24 acacccccactatataaacactactaatgtgtgattcatctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaaat 123  Q
    ||||||||||||||||||||||| ||||||||||| |||  ||||| |||||||||       ||||||||||||||||||||||||||||| ||| |||    
34746 acacccccactatataaacactattaatgtgtgatccatacgatgtgggacttccacttttttcaattcacactacactagttctacccattgtgggaat 34647  T
124 ttgtgtttagtcaattactcaatttcctcgtatgttccaaca 165  Q
    ||||||||||||||||||||||||||| | ||||||||||||    
34646 ttgtgtttagtcaattactcaatttccacatatgttccaaca 34605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 24 - 166
Target Start/End: Original strand, 59477 - 59618
Alignment:
24 acacccccactatataaacactactaatgtgtgattcatctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaaat 123  Q
    |||||||||||||||||||| |||||||||||||| |||| ||||| ||| |||||       ||||||||||||||||||||||||||||| ||| |||    
59477 acacccccactatataaacattactaatgtgtgatccatccgatgtgggatttccacttttt-caattcacactacactagttctacccattgtgggaat 59575  T
124 ttgtgtttagtcaattactcaatttcctcgtatgttccaacaa 166  Q
    ||||||||||||||||||||||||||| | |||||||||||||    
59576 ttgtgtttagtcaattactcaatttccacatatgttccaacaa 59618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 24 - 166
Target Start/End: Original strand, 63679 - 63820
Alignment:
24 acacccccactatataaacactactaatgtgtgattcatctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaaat 123  Q
    |||||||||||||||||||| |||||||||||||| |||| ||||| ||| |||||       ||||||||||||||||||||||||||||| ||| |||    
63679 acacccccactatataaacattactaatgtgtgatccatccgatgtgggatttccacttttt-caattcacactacactagttctacccattgtgggaat 63777  T
124 ttgtgtttagtcaattactcaatttcctcgtatgttccaacaa 166  Q
    ||||||||||||||||||||||||||| | |||||||||||||    
63778 ttgtgtttagtcaattactcaatttccacatatgttccaacaa 63820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 24 - 165
Target Start/End: Complemental strand, 10585206 - 10585066
Alignment:
24 acacccccactatataaacactactaatgtgtgattcatctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaaat 123  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||       ||||||||||||||||||||||||||||| ||| |||    
10585206 acacccccactatataaacactactaatgtgtgatccatccgatgtgggacttccacttttt-caattcacactacactagttctacccattgtgggaat 10585108  T
124 ttgtgtttagtcaattactcaatttcctcgtatgttccaaca 165  Q
    ||||||||||||||||||||||||| | | |||| |||||||    
10585107 ttgtgtttagtcaattactcaattttcacatatgctccaaca 10585066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 24 - 166
Target Start/End: Original strand, 8070746 - 8070889
Alignment:
24 acacccccactatataaacactactaatgtgtgattcatctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaaat 123  Q
    ||||||||||||||||||||||||||||||||| | |||| ||||| |||||||||       |||||||||| ||||||||||||||||  |||| |||    
8070746 acacccccactatataaacactactaatgtgtgttccatccgatgtgggacttcca-ttttttcaattcacacaacactagttctacccaacatgggaat 8070844  T
124 ttgtgtttagtcaatt--actcaatttcctcgtatgttccaacaa 166  Q
    ||||||||||||  ||  ||||||||||| |  ||||||||||||    
8070845 ttgtgtttagtctttttaactcaatttccacacatgttccaacaa 8070889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 24 - 169
Target Start/End: Original strand, 3034711 - 3034859
Alignment:
24 acacccccactatataaacactactaatgtgtg-attc-atctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaa 121  Q
    ||||||||||||||||||||||||||||||||| |||| ||| ||||| |||||||||       |||||||||| ||||||||||||||||  |||| |    
3034711 acacccccactatataaacactactaatgtgtgtattccatccgatgtgggacttccacttttt-caattcacacaacactagttctacccaacatggga 3034809  T
122 atttgtgtttagtcaatt--actcaatttcctcgtatgttccaacaaaaa 169  Q
    ||||||||||||||  ||  ||||||||||| |  |||||||||||||||    
3034810 atttgtgtttagtctgtttaactcaatttccacacatgttccaacaaaaa 3034859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 98 - 166
Target Start/End: Complemental strand, 45903306 - 45903238
Alignment:
98 acactagttctacccattatggaaatttgtgtttagtcaattactcaatttcctcgtatgttccaacaa 166  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||||| | |||||||||||||    
45903306 acactagttctacccattgtgggaatttgtgtttagtcaattactcaatttccacatatgttccaacaa 45903238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 88 - 166
Target Start/End: Original strand, 632069 - 632147
Alignment:
88 aattcacactacactagttctacccattatggaaatttgtgtttagtcaattactcaatttcctcgtatgttccaacaa 166  Q
    ||||||||||| ||||||| |||||||| || ||||||||||||||||||||||||||||| | | |||||||||||||    
632069 aattcacactaaactagttttacccattgtgaaaatttgtgtttagtcaattactcaattttcacatatgttccaacaa 632147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 24 - 135
Target Start/End: Original strand, 8884237 - 8884350
Alignment:
24 acacccccactatataaacactactaatgtgtgatt--catctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaa 121  Q
    |||||||||||||||||||||||||||||||||  |  |||| ||||| |||||||||       |||||||||| ||||||||||||||||  |||| |    
8884237 acacccccactatataaacactactaatgtgtgtgttccatccgatgtgggacttccatttttttcaattcacacaacactagttctacccaacatggga 8884336  T
122 atttgtgtttagtc 135  Q
    ||||||||||||||    
8884337 atttgtgtttagtc 8884350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 24 - 166
Target Start/End: Original strand, 3673633 - 3673778
Alignment:
24 acacccccactatataaacactactaatgtgtgatt--catctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaa 121  Q
    |||||||||||||||||||||||||||||||||  |  |||| ||||| |||||||||       |||||||||| ||||||||||||||||  |||| |    
3673633 acacccccactatataaacactactaatgtgtgtgttccatccgatgtgggacttccacttttt-caattcacacaacactagttctacccaacatggga 3673731  T
122 atttgtgtttagtcaatt--actcaatttcctcgtatgttccaacaa 166  Q
    ||||||||||||||  ||  ||||||||||| |  ||||||||||||    
3673732 atttgtgtttagtctgtttaactcaatttccacacatgttccaacaa 3673778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 24 - 135
Target Start/End: Original strand, 8888983 - 8889096
Alignment:
24 acacccccactatataaacactactaatgtgtgatt--catctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaa 121  Q
    |||||||||||||||||||||||||||||||||  |  |||| ||||| |||||||||       |||||||||| |||||| |||||||||  |||| |    
8888983 acacccccactatataaacactactaatgtgtgtgttccatccgatgtgggacttccacttttttcaattcacacaacactaattctacccaacatggga 8889082  T
122 atttgtgtttagtc 135  Q
    ||||||||||||||    
8889083 atttgtgtttagtc 8889096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 27 - 107
Target Start/End: Complemental strand, 45903598 - 45903518
Alignment:
27 cccccactatataaacactactaatgtgtgattcatctgatgtaggacttccannnnnnncaattcacactacactagttc 107  Q
    ||||||||||||||||||||||||||||||||  ||| |||||  ||||||||       |||||||||||||||||||||    
45903598 cccccactatataaacactactaatgtgtgatctatccgatgtgagacttccaattttttcaattcacactacactagttc 45903518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 166
Target Start/End: Original strand, 3693687 - 3693832
Alignment:
24 acacccccactatataaacactactaa--tgtgtgattcatctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaa 121  Q
    |||||||||||||||||||||||||||  |||||| | |||| ||||| |||||||||       |||||||||| ||| ||||||||||||  |||  |    
3693687 acacccccactatataaacactactaatgtgtgtgttccatccgatgtgggacttcca-ctttttcaattcacacaacattagttctacccaacatgaga 3693785  T
122 atttgtgtttagtcaatt--actcaatttcctcgtatgttccaacaa 166  Q
    ||||||||||||||  ||  ||||||||||| |  ||||||||||||    
3693786 atttgtgtttagtctgtttaactcaatttccacacatgttccaacaa 3693832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 54
Target Start/End: Original strand, 632003 - 632033
Alignment:
24 acacccccactatataaacactactaatgtg 54  Q
    |||||||||||||||||||||||||||||||    
632003 acacccccactatataaacactactaatgtg 632033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 24 - 166
Target Start/End: Complemental strand, 8330403 - 8330261
Alignment:
24 acacccccactatataaacactactaatgtgtgattcatctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaaat 123  Q
    ||||||| ||||||||||||||||||||||||||| |||| ||||| |||||| ||       ||||||||||||  ||||||||||||||| ||| |||    
8330403 acacccctactatataaacactactaatgtgtgatccatccgatgtgggactttcacttttttcaattcacactatgctagttctacccattgtgggaat 8330304  T
124 ttgtgtttagtcaattactcaatttcctcgtatgttccaacaa 166  Q
    ||||||||||||||||||||||||||| | |||||||||||||    
8330303 ttgtgtttagtcaattactcaatttccacatatgttccaacaa 8330261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 24 - 165
Target Start/End: Original strand, 37772785 - 37772928
Alignment:
24 acacccccactatataaacactactaatgtgtgattcatctgatgtaggacttccannnnnnn---caattcacactacactagttctacccattatgga 120  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||          ||||||||||||||||||||||||||||| |||     
37772785 acacccccactatataaacactactaatgtgtgatccatc-gatgtgggacttccattttttttttcaattcacactacactagttctacccattgtggg 37772883  T
121 aatttgtgtttagtcaattactcaatttcctcgtatgttccaaca 165  Q
    |||||||||||||||||||||||||||||| | ||||||||||||    
37772884 aatttgtgtttagtcaattactcaatttccacatatgttccaaca 37772928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 28 - 147
Target Start/End: Complemental strand, 25361742 - 25361624
Alignment:
28 ccccactatataaacactactaatgtgtgattcatctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaaatttgt 127  Q
    |||||||||||||| |||||||||||||||| |||| ||||| |||||||||       ||||||||||||||||||||||||||||||||| |||||||    
25361742 ccccactatataaatactactaatgtgtgatccatccgatgtgggacttccacttttt-caattcacactacactagttctacccattatgggaatttgt 25361644  T
128 gtttagtcaattactcaatt 147  Q
    |||||||| |||||||||||    
25361643 gtttagtccattactcaatt 25361624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 24 - 165
Target Start/End: Complemental strand, 34817763 - 34817620
Alignment:
24 acacccccactatataaacactactaatgtgtgattcatctgatgtaggacttccannnnnnn--caattcacactacactagttctacccattatggaa 121  Q
    |||| |||| ||||||||||||||||||||||||| |||| ||||||| |||||||         ||||| ||||||||||||||||| ||||| ||| |    
34817763 acactcccaatatataaacactactaatgtgtgatccatccgatgtagaacttccatttttttttcaatttacactacactagttctatccattgtggga 34817664  T
122 atttgtgtttagtcaattactcaatttcctcgtatgttccaaca 165  Q
    ||||||||||| ||||||||||||||| | | ||||||||||||    
34817663 atttgtgtttaatcaattactcaattttcacatatgttccaaca 34817620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 44 - 166
Target Start/End: Original strand, 21959473 - 21959595
Alignment:
44 ctactaatgtgtgattcatctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaaatttgtgtttagtcaattactc 143  Q
    ||||||||||||||| ||| ||||||  ||||||||       |||||||||||||| || ||||||||||| ||| |||||||||||||||||||||||    
21959473 ctactaatgtgtgatccatttgatgtgagacttccacttttttcaattcacactacattaattctacccattgtgggaatttgtgtttagtcaattactc 21959572  T
144 aatttcctcgtatgttccaacaa 166  Q
    ||||||  | |||||||||||||    
21959573 aatttcaacatatgttccaacaa 21959595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 24 - 135
Target Start/End: Complemental strand, 43301771 - 43301658
Alignment:
24 acacccccactatataaacactactaatgt--gtgattcatctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaa 121  Q
    ||||||||||||||||||||||||||||||  ||| | |||| |||||||||||||||       |||||||||| ||||||||||||||||  ||||||    
43301771 acacccccactatataaacactactaatgtatgtgttccatccgatgtaggacttccacttttttcaattcacacaacactagttctacccaagatggaa 43301672  T
122 atttgtgtttagtc 135  Q
    ||||||||||||||    
43301671 atttgtgtttagtc 43301658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 24 - 165
Target Start/End: Complemental strand, 31448892 - 31448747
Alignment:
24 acacccccactatataaacactactaatgtgtgatt--catctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaa 121  Q
    |||||||||||||||||||||||||||||||||  |  |||| ||||| |||||||||       |||||||||| ||||||||||||||||  |||| |    
31448892 acacccccactatataaacactactaatgtgtgtgttccatccgatgtgggacttccacttttttcaattcacacaacactagttctacccaacatggga 31448793  T
122 atttgtgtttagtcaatt--actcaatttcctcgtatgttccaaca 165  Q
    ||||||||||||||  ||  ||||||||||| |  |||||||||||    
31448792 atttgtgtttagtctttttaactcaatttccacacatgttccaaca 31448747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 24 - 166
Target Start/End: Complemental strand, 4242107 - 4241962
Alignment:
24 acacccccactatataaacactactaatgtgtgatt--catctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaa 121  Q
    |||||||||||||||||||||||||||||||||  |  |||| ||||| |||||||||       |||||||||| ||||||||||||||||  |||| |    
4242107 acacccccactatataaacactactaatgtgtgtgttccatccgatgtgggacttccacttttt-caattcacacaacactagttctacccaacatggga 4242009  T
122 atttgtgtttagtcaatt--actcaatttcctcgtatgttccaacaa 166  Q
    ||||||||||||||  ||  ||||||||||| |  ||||||||||||    
4242008 atttgtgtttagtctgtttaactcaatttccacacatgttccaacaa 4241962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 24 - 165
Target Start/End: Complemental strand, 4237368 - 4237224
Alignment:
24 acacccccactatataaacactactaatgtgtgatt--catctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaa 121  Q
    |||||||||||||||||||||||||||||||||  |  |||| ||||| |||||||||       |||||||||| ||||||||||||||||  |||| |    
4237368 acacccccactatataaacactactaatgtgtgtgttccatccgatgtgggacttccacttttt-caattcacacaacactagttctacccaacatggga 4237270  T
122 atttgtgtttagtcaatt--actcaatttcctcgtatgttccaaca 165  Q
    ||||||||||||||  ||  ||||||||||| |  |||||||||||    
4237269 atttgtgtttagtctgtttaactcaatttccacacatgttccaaca 4237224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 166
Target Start/End: Complemental strand, 25361622 - 25361577
Alignment:
121 aatttgtgtttagtcaattactcaatttcctcgtatgttccaacaa 166  Q
    ||||| |||||||||||||||||||||||| | |||||| ||||||    
25361622 aatttttgtttagtcaattactcaatttccacatatgttacaacaa 25361577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 26 - 165
Target Start/End: Complemental strand, 6111755 - 6111615
Alignment:
26 acccccactatataaacactactaatgtgtgattcatctgatgtaggacttccannnnnnn-caattcacactacactagttctacccattatggaaatt 124  Q
    ||||| |||||||||||||||||||||||| ||||||| ||||| ||| |||||        ||||||||||||||||||||||||||||| ||| ||||    
6111755 accccgactatataaacactactaatgtgtaattcatccgatgtgggatttccattttttttcaattcacactacactagttctacccattgtgggaatt 6111656  T
125 tgtgtttagtcaattactcaatttcctcgtatgttccaaca 165  Q
    |||||||||||||||||||||||||| ||||||||| ||||    
6111655 tgtgtttagtcaattactcaatttccacgtatgttcaaaca 6111615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 74; Significance: 6e-34; HSPs: 2)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 24 - 166
Target Start/End: Complemental strand, 51937 - 51795
Alignment:
24 acacccccactatataaacactactaatgtgtgattcatctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaaat 123  Q
    ||||||| ||||||||||||||||||||||||||| |||| || ||  ||||||||       ||||||||||||||||| ||||||||||| ||| |||    
51937 acacccctactatataaacactactaatgtgtgatccatccgacgtgtgacttccacttttttcaattcacactacactaattctacccattgtgggaat 51838  T
124 ttgtgtttagtcaattactcaatttcctcgtatgttccaacaa 166  Q
    ||||||||||||||||||||||||| | | |||||||||||||    
51837 ttgtgtttagtcaattactcaattttcacatatgttccaacaa 51795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 24 - 165
Target Start/End: Complemental strand, 46994 - 46857
Alignment:
24 acacccccactatataaacactactaatgtgtgattcatctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaaat 123  Q
    ||||||| ||||||||||||||||||||||    | |||| ||||| |||||||||       ||||||||||||||||||||||||||||| || ||||    
46994 acacccctactatataaacactactaatgt----tccatccgatgtgggacttccacttttttcaattcacactacactagttctacccattgtgaaaat 46899  T
124 ttgtgtttagtcaattactcaatttcctcgtatgttccaaca 165  Q
    ||||||||||||||||||||||| ||| | ||||||||||||    
46898 ttgtgtttagtcaattactcaatctccacatatgttccaaca 46857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 37 - 166
Target Start/End: Complemental strand, 48970 - 48841
Alignment:
37 ataaacactactaatgtgtgattcatctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaaatttgtgtttagtca 136  Q
    |||||||||||||||||||||| |||| ||||| |||||||||       |||||||||||||||||||||| |||||| ||||||||||| ||||||||    
48970 ataaacactactaatgtgtgatccatccgatgtgggacttccacttttttcaattcacactacactagttcttcccattgtggaaatttgtatttagtca 48871  T
137 attactcaatttcctcgtatgttccaacaa 166  Q
    | |||||||||||| | |||||||||||||    
48870 agtactcaatttccacatatgttccaacaa 48841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 37 - 166
Target Start/End: Original strand, 149664 - 149793
Alignment:
37 ataaacactactaatgtgtgattcatctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaaatttgtgtttagtca 136  Q
    |||||||||||||||||||||| |||| ||||| |||||||||       |||||||||||||||||||||| |||||| ||||||||||| ||||||||    
149664 ataaacactactaatgtgtgatccatccgatgtgggacttccacttttttcaattcacactacactagttcttcccattgtggaaatttgtatttagtca 149763  T
137 attactcaatttcctcgtatgttccaacaa 166  Q
    | |||||||||||| | |||||||||||||    
149764 agtactcaatttccacatatgttccaacaa 149793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 24 - 165
Target Start/End: Complemental strand, 41096974 - 41096835
Alignment:
24 acacccccactatataaacactactaatgtgtgattcatctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaaat 123  Q
    ||||||||||||||||||||||| ||||||||||| |||  ||||| |||||||||        |||||||||||||||||||||||||||| |||||||    
41096974 acacccccactatataaacactaataatgtgtgatccatg-gatgtgggacttccattttttt-aattcacactacactagttctacccattgtggaaat 41096877  T
124 ttgtgtttagtcaattactcaatttcctcgtatgttccaaca 165  Q
    ||||||||||||||||||||||||||  | ||||||||||||    
41096876 ttgtgtttagtcaattactcaatttctacatatgttccaaca 41096835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 24 - 167
Target Start/End: Original strand, 33055850 - 33055993
Alignment:
24 acacccccactatataaacactactaatgtgtgattcatctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaaat 123  Q
    ||||| ||||||||||||||||||||||||||||| |||| ||||| |||||||||       ||||||||||| |||||| |||||||||| ||| |||    
33055850 acacctccactatataaacactactaatgtgtgatccatccgatgtgggacttccatttttttcaattcacactgcactaggtctacccattgtgggaat 33055949  T
124 ttgtgtttagtcaattactcaatttcctcgtatgttccaacaaa 167  Q
    ||||| |||||||||||| |||||| | | ||||||||||||||    
33055950 ttgtgcttagtcaattacacaattttcacatatgttccaacaaa 33055993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 24 - 169
Target Start/End: Original strand, 3095156 - 3095304
Alignment:
24 acacccccactatataaacactactaatgtgtga--ttcatctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaa 121  Q
    |||||||||||||||||||||||||||||||||   |||||| ||||| |||||||||       |||||||||| ||||||||||||||||  ||||||    
3095156 acacccccactatataaacactactaatgtgtgtgtttcatccgatgtgggacttccacttttt-caattcacacaacactagttctacccaacatggaa 3095254  T
122 atttgtgtttagtcaatt--actcaatttcctcgtatgttccaacaaaaa 169  Q
    |||||||||||||   ||  ||||||||||| |  |||||||||||||||    
3095255 atttgtgtttagtttgtttaactcaatttccacacatgttccaacaaaaa 3095304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 24 - 116
Target Start/End: Complemental strand, 40232414 - 40232321
Alignment:
24 acacccccactatataaacactact-aatgtgtgattcatctgatgtaggacttccannnnnnncaattcacactacactagttctacccatta 116  Q
    ||||||||||||||||||||||||| |||||||||| |||| ||||| |||||||||       |||||||||||||| |||||||||||||||    
40232414 acacccccactatataaacactactaaatgtgtgatccatccgatgtgggacttccacttttttcaattcacactacattagttctacccatta 40232321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0484 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: scaffold0484
Description:

Target: scaffold0484; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 28 - 147
Target Start/End: Original strand, 7988 - 8106
Alignment:
28 ccccactatataaacactactaatgtgtgattcatctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaaatttgt 127  Q
    |||||||||||||| || ||||||||||||| |||| ||||| |||||||||       |||||| |||||||||||||||||||||||||| |||||||    
7988 ccccactatataaataccactaatgtgtgatccatccgatgtgggacttccacttttt-caattctcactacactagttctacccattatgggaatttgt 8086  T
128 gtttagtcaattactcaatt 147  Q
    ||||||||||||||||||||    
8087 gtttagtcaattactcaatt 8106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0484; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 166
Target Start/End: Original strand, 8108 - 8153
Alignment:
121 aatttgtgtttagtcaattactcaatttcctcgtatgttccaacaa 166  Q
    ||||| |||||||||||||||||||||||| | |||||| ||||||    
8108 aatttttgtttagtcaattactcaatttccacatatgttacaacaa 8153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 44 - 166
Target Start/End: Complemental strand, 213375 - 213253
Alignment:
44 ctactaatgtgtgattcatctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaaatttgtgtttagtcaattactc 143  Q
    ||||||||||||||| ||| ||||||  ||||||||       |||||||||||||| || ||||||||||| ||| |||||||||||||||||||||||    
213375 ctactaatgtgtgatccatttgatgtgagacttccacttttttcaattcacactacattaattctacccattgtgggaatttgtgtttagtcaattactc 213276  T
144 aatttcctcgtatgttccaacaa 166  Q
    ||||||  | |||||||||||||    
213275 aatttcaacatatgttccaacaa 213253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 24 - 165
Target Start/End: Complemental strand, 8909 - 8764
Alignment:
24 acacccccactatataaacactactaatgtgtgatt--catctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaa 121  Q
    |||||||||||||||||||||||||||||||||  |  |||| ||||| ||| |||||       |||||||||| ||||||||||||||||  |||| |    
8909 acacccccactatataaacactactaatgtgtgtgttccatccgatgtgggatttccacttttttcaattcacacaacactagttctacccaacatggga 8810  T
122 atttgtgtttagtcaatt--actcaatttcctcgtatgttccaaca 165  Q
    ||||||||||||||  ||  ||||||||||| |  |||||||||||    
8809 atttgtgtttagtctttttaactcaatttccacacatgttccaaca 8764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 135
Target Start/End: Original strand, 83975 - 84088
Alignment:
24 acacccccactatataaacactactaatgtgtgatt--catctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaa 121  Q
    ||||| |||||||||||||||||||||||||||  |  |||   ||||||||||| ||       |||||||||| ||||||||||||||||  || |||    
83975 acacctccactatataaacactactaatgtgtgtgttccattcaatgtaggactttcactcttttcaattcacacaacactagttctacccaacatagaa 84074  T
122 atttgtgtttagtc 135  Q
    ||||||||||||||    
84075 atttgtgtttagtc 84088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0628 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0628
Description:

Target: scaffold0628; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 166
Target Start/End: Original strand, 5798 - 5878
Alignment:
87 caattcacactacactagttctacccattatggaaatttgtgtttagtcaatt-actcaatttcctcgtatgttccaacaa 166  Q
    |||||||||| |||||||||||||| | ||||  ||||||||||||||   || ||||||||||| |  ||||||||||||    
5798 caattcacacaacactagttctaccaaatatgagaatttgtgtttagtattttaactcaatttccacacatgttccaacaa 5878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University