View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12261_low_20 (Length: 298)
Name: NF12261_low_20
Description: NF12261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12261_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 18 - 286
Target Start/End: Original strand, 32808355 - 32808623
Alignment:
| Q |
18 |
tgttgtggcttcaagtgaatgcaaattggatcaaattggagacttggcttatcctaatcaagcttttgcacaatttgttcacaatgcaaaagatttcctt |
117 |
Q |
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|||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
32808355 |
tgttgtggcttcaagtgaatacaaattgaatcaaattggagacttggcttatcctaatcaagcttttgcacaatttgttcacaatgcaaaagattttctt |
32808454 |
T |
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| Q |
118 |
aagataggtgatataccactatgtgttctccaggtacaaatatattcttgtcaatttattatccttagtaaaggtttccttaagtaaaggtttttgagat |
217 |
Q |
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|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
32808455 |
aagataggtgatctaccactatgtgttgtccaggtacaaatatattcttgtcaatttatcatccttagtaaaggtttccttaagtaaaggtttttgagat |
32808554 |
T |
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| Q |
218 |
tttgataaacacattttgatcgtataaaatctgtatttgtccatagtttttcacaataataaggatcat |
286 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32808555 |
tttgataaacacattttgatcgtataaaatctgtatttgtccatagtttttcacaataataaggatcat |
32808623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 18 - 286
Target Start/End: Original strand, 32825050 - 32825318
Alignment:
| Q |
18 |
tgttgtggcttcaagtgaatgcaaattggatcaaattggagacttggcttatcctaatcaagcttttgcacaatttgttcacaatgcaaaagatttcctt |
117 |
Q |
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|||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
32825050 |
tgttgtggcttcaagtgaatacaaattgaatcaaattggagacttggcttatcctaatcaagcttttgcacaatttgttcacaatgcaaaagattttctt |
32825149 |
T |
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| Q |
118 |
aagataggtgatataccactatgtgttctccaggtacaaatatattcttgtcaatttattatccttagtaaaggtttccttaagtaaaggtttttgagat |
217 |
Q |
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|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
32825150 |
aagataggtgatctaccactatgtgttgtccaggtacaaatatattcttgtcaatttatcatccttagtaaaggtttccttaagtaaaggtttttgagat |
32825249 |
T |
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| Q |
218 |
tttgataaacacattttgatcgtataaaatctgtatttgtccatagtttttcacaataataaggatcat |
286 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32825250 |
tttgataaacacattttgatcgtataaaatctgtatttgtccatagtttttcacaataataaggatcat |
32825318 |
T |
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