View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12261_low_21 (Length: 252)
Name: NF12261_low_21
Description: NF12261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12261_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-99; HSPs: 13)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 2 - 237
Target Start/End: Complemental strand, 20433165 - 20432930
Alignment:
| Q |
2 |
cctgaatccttgcttcatttggtcatacatccgtttaatgaaaatctaagtagctcactgattttgttttctcttactcagagatataataagttgcatt |
101 |
Q |
| |
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||||||| ||| |||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||| ||||| ||||||||||||||||||||||| |
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| T |
20433165 |
cctgaatactttcttcatttggtcatacatttgtttaatgaaaatctaagtggctcactgatattgttttgtcttagtcagagatataataagttgcatt |
20433066 |
T |
|
| Q |
102 |
gatggattatattctaagctctgacagatctagagattaaatttctaagactgttatttggtatcaattttgttttcttaaacttgttctaaatttcatc |
201 |
Q |
| |
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||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |
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| T |
20433065 |
gatgggttatattctaagatctgacagatgtagagattaaatttctaagactgttatttggtatcaactttgttttcttaaacttggtctaaatttcatc |
20432966 |
T |
|
| Q |
202 |
ttctattaaattaacaggaacttatattcattgtct |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
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|
| T |
20432965 |
ttctattaaattaacaggaacttatattcattgtct |
20432930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 2 - 237
Target Start/End: Complemental strand, 20439638 - 20439403
Alignment:
| Q |
2 |
cctgaatccttgcttcatttggtcatacatccgtttaatgaaaatctaagtagctcactgattttgttttctcttactcagagatataataagttgcatt |
101 |
Q |
| |
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||||||| ||| |||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||| ||||| ||||||||||||||||||||||| |
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| T |
20439638 |
cctgaatactttcttcatttggtcatacatttgtttaatgaaaatctaagtggctcactgatattgttttgtcttagtcagagatataataagttgcatt |
20439539 |
T |
|
| Q |
102 |
gatggattatattctaagctctgacagatctagagattaaatttctaagactgttatttggtatcaattttgttttcttaaacttgttctaaatttcatc |
201 |
Q |
| |
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||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |
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| T |
20439538 |
gatgggttatattctaagatctgacagatgtagagattaaatttctaagactgttatttggtatcaactttgttttcttaaacttggtctaaatttcatc |
20439439 |
T |
|
| Q |
202 |
ttctattaaattaacaggaacttatattcattgtct |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
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| T |
20439438 |
ttctattaaattaacaggaacttatattcattgtct |
20439403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 2 - 151
Target Start/End: Complemental strand, 20445365 - 20445216
Alignment:
| Q |
2 |
cctgaatccttgcttcatttggtcatacatccgtttaatgaaaatctaagtagctcactgattttgttttctcttactcagagatataataagttgcatt |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
20445365 |
cctgaatccttgcttcatttggtcatacatctgtttaatgaaaatctaagtagctcactgatttgtttttctcttactcagagatataataagttgcatt |
20445266 |
T |
|
| Q |
102 |
gatggattatattctaagctctgacagatctagagattaaatttctaaga |
151 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20445265 |
gatggattatattctaagctctgacagatctagagattaaatttctaaga |
20445216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 4 - 154
Target Start/End: Complemental strand, 20410251 - 20410101
Alignment:
| Q |
4 |
tgaatccttgcttcatttggtcatacatccgtttaatgaaaatctaagtagctcactgattttgttttctcttactcagagatataataagttgcattga |
103 |
Q |
| |
|
||||| ||||||||||||||||||||||| | ||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |
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| T |
20410251 |
tgaatacttgcttcatttggtcatacatctctgtaaagaaaatctaagtagctcactggttttcttttctcttactcagagatataataagttgcattga |
20410152 |
T |
|
| Q |
104 |
tggattatattctaagctctgacagatctagagattaaatttctaagactg |
154 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
20410151 |
tgtgttatattctaagctctgacagatctagagattaaatttctaggactg |
20410101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 4 - 154
Target Start/End: Complemental strand, 20426948 - 20426801
Alignment:
| Q |
4 |
tgaatccttgcttcatttggtcatacatccgtttaatgaaaatctaagtagctcactgattttgttttctcttactcagagatataataagttgcattga |
103 |
Q |
| |
|
||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||| | |
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| T |
20426948 |
tgaatacttgcttcatttggtcaaacatttgtttaatgaaaatctaagtagctcactgatttt-ttttctcttaatcagcgatataataagttgcat--a |
20426852 |
T |
|
| Q |
104 |
tggattatattctaagctctgacagatctagagattaaatttctaagactg |
154 |
Q |
| |
|
||| |||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
20426851 |
tgggttatattctaagctctaacagatctagagattaaatttctaagactg |
20426801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 135 - 237
Target Start/End: Complemental strand, 20432710 - 20432608
Alignment:
| Q |
135 |
agattaaatttctaagactgttatttggtatcaattttgttttcttaaacttgttctaaatttcatcttctattaaattaacaggaacttatattcattg |
234 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20432710 |
agattaaatttcgaagactgttatttggtatcaattttgttttcttaaacttgttctaaatttcatcttctattaaattaacaggaacttatattcattg |
20432611 |
T |
|
| Q |
235 |
tct |
237 |
Q |
| |
|
||| |
|
|
| T |
20432610 |
tct |
20432608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 135 - 237
Target Start/End: Complemental strand, 20432871 - 20432769
Alignment:
| Q |
135 |
agattaaatttctaagactgttatttggtatcaattttgttttcttaaacttgttctaaatttcatcttctattaaattaacaggaacttatattcattg |
234 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20432871 |
agattaaatttctaagactgttatttggtatcaattttgttttcttaaacttggtctaaatttcatcttctattaaattaacaggaacttatattcattg |
20432772 |
T |
|
| Q |
235 |
tct |
237 |
Q |
| |
|
||| |
|
|
| T |
20432771 |
tct |
20432769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 89 - 154
Target Start/End: Original strand, 20408602 - 20408667
Alignment:
| Q |
89 |
aataagttgcattgatggattatattctaagctctgacagatctagagattaaatttctaagactg |
154 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20408602 |
aataagttgcattgatgggttatattctaagctctgacagatctagagattaaatttctaagactg |
20408667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 89 - 154
Target Start/End: Original strand, 20424129 - 20424194
Alignment:
| Q |
89 |
aataagttgcattgatggattatattctaagctctgacagatctagagattaaatttctaagactg |
154 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
20424129 |
aataagttgcattgatgggttatattctaagctctgacagatctagagattaaatttctatgactg |
20424194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 89 - 154
Target Start/End: Original strand, 20443219 - 20443284
Alignment:
| Q |
89 |
aataagttgcattgatggattatattctaagctctgacagatctagagattaaatttctaagactg |
154 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20443219 |
aataagttgctttgatgggttatattctaagctctgacagatctagagattaaatttctaagactg |
20443284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 58 - 154
Target Start/End: Original strand, 20373015 - 20373111
Alignment:
| Q |
58 |
actgattttgttttctcttactcagagatataataagttgcattgatggattatattctaagctctgacagatctagagattaaatttctaagactg |
154 |
Q |
| |
|
||||||||||||||||||||||||||| ||| |||||| || |||||| || |||| || ||| ||||||||||||||||| | |||||||||| |
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|
| T |
20373015 |
actgattttgttttctcttactcagagttattataagtggctttgatgagttgccttctcagttctcacagatctagagattaattgtctaagactg |
20373111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 201 - 237
Target Start/End: Original strand, 20423726 - 20423762
Alignment:
| Q |
201 |
cttctattaaattaacaggaacttatattcattgtct |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20423726 |
cttctattaaattaacaggaacttatattcattgtct |
20423762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 153 - 206
Target Start/End: Original strand, 20408284 - 20408337
Alignment:
| Q |
153 |
tgttatttggtatcaattttgttttcttaaacttgttctaaatttcatcttcta |
206 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||||| |||||| ||||||| |
|
|
| T |
20408284 |
tgttatttggtatcaattaggttttcttaaatttgttcttaatttcgtcttcta |
20408337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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