View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12261_low_22 (Length: 252)
Name: NF12261_low_22
Description: NF12261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12261_low_22 |
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| [»] chr7 (6 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 48 - 252
Target Start/End: Complemental strand, 20445594 - 20445390
Alignment:
| Q |
48 |
atatatcaatggtcacggatgctcaccaatgctcaattcttttctatttcctaatgtttttgttttctgtcttaaataaatctttagaaaaacatgacaa |
147 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
20445594 |
atatatcaatggtcacggatgctcaccaatgctcaattcttttctatttcctaatgtttttgttttctgtcttaaataaatctttagaaaaaaatgacaa |
20445495 |
T |
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| Q |
148 |
ttgtgcttaaatgatatatcaatgctcatcaaatcaagttgatatttgtattgactaattgaccacgcccatagaaaatcctttcaagagcttcaccgat |
247 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
20445494 |
ttgtgcttaaatgatatatcaatgctcatcaaatcaagttgatatttgtattgactaattgaccacgcccatagaaaatcccttcaagagcttcaccgat |
20445395 |
T |
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| Q |
248 |
gtttt |
252 |
Q |
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||||| |
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| T |
20445394 |
gtttt |
20445390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 47 - 252
Target Start/End: Complemental strand, 20433395 - 20433190
Alignment:
| Q |
47 |
tatatatcaatggtcacggatgctcaccaatgctcaattcttttctatttcctaatgtttttgttttctgtcttaaataaatctttagaaaaacatgaca |
146 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
20433395 |
tatatatcaatggtcacggatgctcaccaatgctcaattcttttctatttcctaatgtttttgttttctgtcttaaataaatctttagaaaaaaatgaca |
20433296 |
T |
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| Q |
147 |
attgtgcttaaatgatatatcaatgctcatcaaatcaagttgatatttgtattgactaattgaccacgcccatagaaaatcctttcaagagcttcaccga |
246 |
Q |
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| T |
20433295 |
attgtgcttaaatgatatatcaatgctcatcaaatcaagttgatatttgtattgactaattgaccacgcccatagaaaatcccttcaagagcttcaccaa |
20433196 |
T |
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| Q |
247 |
tgtttt |
252 |
Q |
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|||||| |
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| T |
20433195 |
tgtttt |
20433190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 47 - 252
Target Start/End: Complemental strand, 20439868 - 20439663
Alignment:
| Q |
47 |
tatatatcaatggtcacggatgctcaccaatgctcaattcttttctatttcctaatgtttttgttttctgtcttaaataaatctttagaaaaacatgaca |
146 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
20439868 |
tatatatcaatggtcacggatgctcaccaatgctcaattcttttctatttcctaatgtttttgttttctgtcttaaataaatctttagaaaaaaatgaca |
20439769 |
T |
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| Q |
147 |
attgtgcttaaatgatatatcaatgctcatcaaatcaagttgatatttgtattgactaattgaccacgcccatagaaaatcctttcaagagcttcaccga |
246 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |
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| T |
20439768 |
attgtgcttaaatgatatatcaatgctcatcaaatcaagttgatatttgtattgactaattgaccacgcccatagaaaatcccttcaagagcttcaccaa |
20439669 |
T |
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| Q |
247 |
tgtttt |
252 |
Q |
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|||||| |
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| T |
20439668 |
tgtttt |
20439663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 47 - 252
Target Start/End: Complemental strand, 20427178 - 20426975
Alignment:
| Q |
47 |
tatatatcaatggtcacggatgctcaccaatgctcaattcttttctatttcctaatgtttttgttttctgtcttaaataaatctttagaaaaacatgaca |
146 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
20427178 |
tatatatcaatggtcacggatgctcaccaatgctcaattattttctatttcctaatgtttttgttttctgtcttaaataaaactttagaaaaacatgaca |
20427079 |
T |
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| Q |
147 |
attgtgcttaaatgatatatcaatgctcatcaaatcaagttgatatttgtattgactaattgaccacgcccatagaaaatcctttcaagagcttcaccga |
246 |
Q |
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|||||||||||||||| | | ||||| |||||||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||||||| |||| |
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| T |
20427078 |
attgtgcttaaatgattttttaatgcccatcaaatcaagttgatatttgtattgactaattgaccacacc--tagaaaatcctttaaagagcttcgccga |
20426981 |
T |
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| Q |
247 |
tgtttt |
252 |
Q |
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|||||| |
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| T |
20426980 |
tgtttt |
20426975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 80 - 182
Target Start/End: Complemental strand, 20410397 - 20410298
Alignment:
| Q |
80 |
tcaattcttttctatttcctaatgtttttgttttctgtcttaaataaatctttagaaaaacatgacaattgtgcttaaatga-tatatcaatgctcatca |
178 |
Q |
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||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||| ||||||||||||||||| ||| | ||||||||||||||| |
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| T |
20410397 |
tcaattcttttctatttcctattgtttttgttttctgtcataaataaatcttgagaa----atgacaattgtgcttaattgattttatcaatgctcatca |
20410302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 134 - 244
Target Start/End: Original strand, 20372830 - 20372941
Alignment:
| Q |
134 |
gaaaaacatgacaattgtgcttaaatgatatatcaatgctcatcaaatcaagttgatatttgtattga-ctaattgaccacgcccatagaaaatcctttc |
232 |
Q |
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|||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||| | ||||||| ||||||||||| | |||||||||| || | |
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| T |
20372830 |
gaaaaaaatgacaattgtgcttaaatgatatatcaatgccaatcaaatcatgttgataatcgtattgatttaattgaccacacaaatagaaaatcgttgc |
20372929 |
T |
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| Q |
233 |
aagagcttcacc |
244 |
Q |
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||||| |||||| |
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| T |
20372930 |
aagaggttcacc |
20372941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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