View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12261_low_28 (Length: 211)
Name: NF12261_low_28
Description: NF12261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12261_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 17 - 199
Target Start/End: Complemental strand, 25104978 - 25104795
Alignment:
| Q |
17 |
cacaatttttcctgaaagaaagcaatctactggagcatgatcaccctaagttagatgaggcagttattgaatttgaaaatgagcgtgagagtgagac-nn |
115 |
Q |
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| T |
25104978 |
cacaatttttcctgaaagaaagcaatctactggagcatgatcaccctaagttagatgaggcagttattgaatttgaaaatgagagtgagagtgagacaaa |
25104879 |
T |
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| Q |
116 |
nnnnnngaggaaaactacagggtgatggagacatagagacaatgaagaagataaagaataggagaaatacttcattgagcacag |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25104878 |
aaaaaagaggaaaactacagggtgatggagacatagagacaatgaagaagataaagaataggagaaatacttcattgagcacag |
25104795 |
T |
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