View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12261_low_7 (Length: 443)
Name: NF12261_low_7
Description: NF12261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12261_low_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 13 - 428
Target Start/End: Complemental strand, 35172829 - 35172414
Alignment:
| Q |
13 |
tgtgtttgaatctagtcataggaatacaacaatgttaaatattttaatagagtttcgtcatctattatgatcatactcgactcaaaggattaatatctac |
112 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| | |
|
|
| T |
35172829 |
tgtgtttgaatctagtcataggaatgcaacaatgctaaatattttgatagagtttcgtcatctattatggtcatactcgactcaaaggattaatatctgc |
35172730 |
T |
|
| Q |
113 |
aattacacaaaaataatatttggatcatgccaaaaagatattttatcggcaaagcctacatataccttacacctataaagtaataaaagtaaaatcttct |
212 |
Q |
| |
|
|||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
35172729 |
aattacacgaaaagaatatttgaatcatgccaaaaagatattttatcggcaaagcctacatataccttgcacctataaagtaataaaagtaaaatcttct |
35172630 |
T |
|
| Q |
213 |
taggaagacaagagaaagcttattccctgtacaaacaataatgatatatggacaaacattatttgtacatccgctcaatacactttgttaatcatgttaa |
312 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||| |||||||||| |||||||||||||||| |
|
|
| T |
35172629 |
taggaagacaagagaaagcttattccctagacaaacaataatgatatatagacagacattatttgtacatccactcaatacaccttgttaatcatgttaa |
35172530 |
T |
|
| Q |
313 |
aaaatatggttgaataactagagtagacggttaattcaattcacaactaaaattatggttaactaagctacatgaaatttaacgacaattttcaacgtaa |
412 |
Q |
| |
|
||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
35172529 |
aaaatgttgttgaataactagagtagacggttaattcaattcacaactaaaattatagttaactaagctatatgaaatttaacgacaattttcaacgtaa |
35172430 |
T |
|
| Q |
413 |
attgaattaaatatct |
428 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
35172429 |
attgaattaaatatct |
35172414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 182 - 218
Target Start/End: Complemental strand, 35146767 - 35146731
Alignment:
| Q |
182 |
cacctataaagtaataaaagtaaaatcttcttaggaa |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35146767 |
cacctataaagtaataaaagtaaaatcttcttaggaa |
35146731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 422
Target Start/End: Original strand, 25651301 - 25651387
Alignment:
| Q |
334 |
agtagacggttaattcaattcacaactaaaattatggttaactaagctacatgaaatttaacgacaattttcaacgtaaattgaattaa |
422 |
Q |
| |
|
|||||| ||||||||||||||||| |||||| ||||||| | | || |||||| |||||||||||||| ||||| |||||||||| |
|
|
| T |
25651301 |
agtagatggttaattcaattcacagtcaaaattctggttaatttaactgcatgaa--ttaacgacaatttttaacgtggattgaattaa |
25651387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University