View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12261_low_8 (Length: 443)
Name: NF12261_low_8
Description: NF12261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12261_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 144; Significance: 1e-75; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 24 - 209
Target Start/End: Original strand, 8173150 - 8173341
Alignment:
| Q |
24 |
ttgaggctcatgatgccataacaaa-----caaatagaagtgtgagaatagattgagaaaaaatatttgaacaatgagcgacaatattttgatttctcat |
118 |
Q |
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| T |
8173150 |
ttgaggctcatgatgccataacaaattaaacaaatagaagtgtgagaatagattgagaaaaaatatttgaacgatgagcgataatattttgatttctcat |
8173249 |
T |
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| Q |
119 |
ctaagtgatatgtggcatcatatatgtatttaaagtgatta-tttatagattatgcttatttgaacaacgcacatgagaagttgaccattaa |
209 |
Q |
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| T |
8173250 |
ctaagtgatatgtggcatcatatatgtatttaaaggggttattttttagattatgcttatttgaacaacgcacatgagaagttgaccattaa |
8173341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 208 - 368
Target Start/End: Original strand, 8174717 - 8174878
Alignment:
| Q |
208 |
aaataagcaaagcacttaacaaaattcactcctaactagacaacttttctataatcattgttcgcaacaagcaagaacaactcagtttcaataagtctag |
307 |
Q |
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| T |
8174717 |
aaataagcaaagcacttaacaaaattcactcctaaatagacaacttttctataatcattgttcgcaacaagcaagaacaactcagtttcaataagtctag |
8174816 |
T |
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| Q |
308 |
gcttgttaaccttgatccatcaactttgtaagagtcatccaagccaa-tcatccataattga |
368 |
Q |
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| T |
8174817 |
gcttgttaaccttgatccatcaactttgcaagagtcatccaagccaatttatccataattga |
8174878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 377 - 425
Target Start/End: Original strand, 8176040 - 8176088
Alignment:
| Q |
377 |
gtcaaaacccaccggaaggtcgcaaaaagtctcacgggaagctttattc |
425 |
Q |
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| T |
8176040 |
gtcaaaacccaccggtaggtcgcaaaaagtctcacgggaagctttattc |
8176088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 151 - 209
Target Start/End: Complemental strand, 48775334 - 48775276
Alignment:
| Q |
151 |
aagtgattatttatagattatgcttatttgaacaacgcacatgagaagttgaccattaa |
209 |
Q |
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| T |
48775334 |
aagtgattatttttagattcagcttattcgaacaacacaaacgagaagttgaccattaa |
48775276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 150 - 202
Target Start/End: Complemental strand, 30534595 - 30534543
Alignment:
| Q |
150 |
aaagtgattatttatagattatgcttatttgaacaacgcacatgagaagttga |
202 |
Q |
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| T |
30534595 |
aaagtgattatttttagattatgcttatttgaataacgcaaatgagaagttga |
30534543 |
T |
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