View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12262_low_3 (Length: 389)
Name: NF12262_low_3
Description: NF12262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12262_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 13 - 336
Target Start/End: Original strand, 31748987 - 31749311
Alignment:
| Q |
13 |
tgtgctctttattcttctgtcatcaccaccctactcatatcttaatcattttaactaacatgtnnnnnnnn-cactagtcttcactttgactaataaaaa |
111 |
Q |
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| T |
31748987 |
tgtgctctttattcttctgtcatcaccaccctactcatatcttaatcattttaactaacatgtaaaaaaaaacactagtcttcactttgactaataaaaa |
31749086 |
T |
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| Q |
112 |
taataattccttatgtaagattacaggatgttaattctgttagtatgagttgattagttatgaattaattaggagttagttacttaatttgttggtgcaa |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31749087 |
taataattccttatgtaagattacaggatgttaattctgttagtatgagttgattagttatgaattaattaggagttagttacttaatttgttggtgcaa |
31749186 |
T |
|
| Q |
212 |
ttgggctctatagataatatagttatgtacacaatttactaacttttatcaaaatataattcctgatgtattttgcttattctgccaaatcactcttcgc |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
31749187 |
ttgggctctatagataatatagttatgtacacaatttactaacttttatcaaaatataattccttatgtattttgcttattctgccaaatcactcttcgc |
31749286 |
T |
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| Q |
312 |
tcatttttctctgatttccaacata |
336 |
Q |
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|||||| |||||||||||||||||| |
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| T |
31749287 |
tcatttgtctctgatttccaacata |
31749311 |
T |
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