View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12263_low_1 (Length: 423)
Name: NF12263_low_1
Description: NF12263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12263_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 134; Significance: 1e-69; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 41 - 388
Target Start/End: Original strand, 41637531 - 41637845
Alignment:
| Q |
41 |
cattctatcaccttactattaattgctttctcgcataacatggaacaagtctatata---ttatttaaattggaggcttgtttaaggcaaaaaagttttt |
137 |
Q |
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| T |
41637531 |
cattctaccaccttgctattaattgctttttcgcataacatggaacaagtctacatagtattatttaaattggaggcctatttaaggcgaatta--tttt |
41637628 |
T |
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| Q |
138 |
gaaaaattgctatttttctattaaaattggctcactctcaaccaaacttttaaaaatactttcaacgaaatttcgtgaaatacaacatgacttaactcac |
237 |
Q |
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| T |
41637629 |
gaaaaattgttattgttccattaaaattggctcactctcaaccaaactttcaaaaatacccccaatgaaacttggtgaaatacatc-------------- |
41637714 |
T |
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| Q |
238 |
gctgattcctacatctatgaatcacgtccctgtagcttttgcttcgtgtcctctcttgccgtcattttggaccaccgtcatctcatccgaagctccttca |
337 |
Q |
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| T |
41637715 |
-------cctacatctatgaatcacgtccctgtagcttttgcttcgtgtc-------------attttggaccaccgtcatctcatccgaagctccttca |
41637794 |
T |
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| Q |
338 |
acttctacctgctctgatcggtacctcttgtatatatcacgtttataaaac |
388 |
Q |
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| T |
41637795 |
acttctacctgctctgatcggtacctcttgtatatatcacgtttataaaac |
41637845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 245 - 388
Target Start/End: Complemental strand, 41638772 - 41638631
Alignment:
| Q |
245 |
cctacatctatgaatcacgtccctgtagcttttgcttcgtgtcctctcttgccgtcattttggaccaccgtcatctcatccgaagctccttcaacttcta |
344 |
Q |
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| T |
41638772 |
cctacatcaatgaatcacatgcctgtagcttttgcttcgtgccctctcttgccgtcattttggattg--gtaccgtcatccgtagctccttcaacttcta |
41638675 |
T |
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| Q |
345 |
cctgctctgatcggtacctcttgtatatatcacgtttataaaac |
388 |
Q |
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| T |
41638674 |
cctgctctgaccggtacctcttgtatatatcacgtttataaaac |
41638631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 352 - 388
Target Start/End: Original strand, 39628061 - 39628097
Alignment:
| Q |
352 |
tgatcggtacctcttgtatatatcacgtttataaaac |
388 |
Q |
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| T |
39628061 |
tgatcggtacctcttgtatatatcacgtttataaaac |
39628097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 89; Significance: 9e-43; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 257 - 388
Target Start/End: Complemental strand, 50408315 - 50408181
Alignment:
| Q |
257 |
aatcacgtccctgtagcttttgcttcgtg---tcctctcttgccgtcattttggaccaccgtcatctcatccgaagctccttcaacttctacctgctctg |
353 |
Q |
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| T |
50408315 |
aatcacatcactgtagcttttgcttcttcctttcctctcttgccgtcattttggaccaccgtcatctcagccgtagctccttcaacttcaacctgctctg |
50408216 |
T |
|
| Q |
354 |
atcggtacctcttgtatatatcacgtttataaaac |
388 |
Q |
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| T |
50408215 |
atcggtacctcttgtatatatcacctttataaaac |
50408181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 114
Target Start/End: Original strand, 41130455 - 41130491
Alignment:
| Q |
78 |
acatggaacaagtctatatattatttaaattggaggc |
114 |
Q |
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| T |
41130455 |
acatgaaacgagtctatatattatttaaattggaggc |
41130491 |
T |
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