View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12264_high_2 (Length: 460)
Name: NF12264_high_2
Description: NF12264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12264_high_2 |
 | |
|
| [»] scaffold0466 (2 HSPs) |
| | |
|
| [»] scaffold1041 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 380; Significance: 0; HSPs: 11)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 22 - 401
Target Start/End: Original strand, 25494981 - 25495360
Alignment:
| Q |
22 |
ttctattcttttctattctttctagctcttctcgtctggtttggctttcttatcgtctagctcttgtggtgtttttcacacacttattgttggagatcta |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25494981 |
ttctattcttttctattctttctagctcttctcgtctggtttggctttcttatcgtctagctcttgtggtgtttttcacacacttattgttggagatcta |
25495080 |
T |
|
| Q |
122 |
ttagttaattcgactacacacgccacaacttcaaccccacaattattttggtagtttcttacttttgagcatgattcgagtcatatcaagaattgttcta |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25495081 |
ttagttaattcgactacacacgccacaacttcaaccccacaattattttggtagtttcttacttttgagcatgattcgagtcatatcaagaattgttcta |
25495180 |
T |
|
| Q |
222 |
attttccttcctaaaaatcatggttccaaccataatttgttatgttttgttagttgaagcctaattcaattctctttcacaaactcttgaaactctttag |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25495181 |
attttccttcctaaaaatcatggttccaaccataatttgttatgttttgttagttgaagcctaattcaattctctttcacaaactcttgaaactctttag |
25495280 |
T |
|
| Q |
322 |
aagttaattcatatcctcggtacgtccatatagcttttatctgcaagctggttctctcgattgtacctttgttattcttg |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25495281 |
aagttaattcatatcctcggtacgtccatatagcttttatctgcaagctggttctctcgattgtacctttgttattcttg |
25495360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 83 - 343
Target Start/End: Original strand, 25618150 - 25618388
Alignment:
| Q |
83 |
tcttgtggtgtttttcacacacttattgttggagatctattagttaattcgactacacacgccacaacttcaaccccacaattattttggtagtttctta |
182 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
25618150 |
tcttgtggtgtttttcacatacttattgttggagatctattagttaattagactacacacgccacaactt-aaacccacaattattttggtagtttctta |
25618248 |
T |
|
| Q |
183 |
cttttgagcatgattcgagtcatatcaagaattgttctaattttccttcctaaaaatcatggttccaaccataatttgttatgttttgttagttgaagcc |
282 |
Q |
| |
|
|||| |||||||||||||| |||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
25618249 |
ctttggagcatgattcgagccatatcaacaattgttctaattttcctt---------------------cataatttgttttgttttgttagttgaagcc |
25618327 |
T |
|
| Q |
283 |
taattcaattctctttcacaaactcttgaaactctttagaagttaattcatatcctcggta |
343 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
25618328 |
taattcaattctctttcacaaactcttgaaactctttagaaattaattcatatcctcggta |
25618388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 83 - 259
Target Start/End: Original strand, 25650875 - 25651055
Alignment:
| Q |
83 |
tcttgtggtgtttttcacacacttattgttggagatctattagttaattcgactacacacgccacaacttcaaccccacaattattttggtagtttctta |
182 |
Q |
| |
|
||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
25650875 |
tcttgcggtatttttcacacacttattgttggagatctattagttaattagactacacacgccacaacttcaa-cccacaattattttggtagtttctta |
25650973 |
T |
|
| Q |
183 |
cttttgagcatgattcg-----agtcatatcaagaattgttctaattttccttcctaaaaatcatggttccaaccataattt |
259 |
Q |
| |
|
||||||||||||||||| || |||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||| |
|
|
| T |
25650974 |
cttttgagcatgattcgagccaagccatatcaagaattgttctaattttccttcctacaaagcatggttcgaaccataattt |
25651055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 257 - 401
Target Start/End: Original strand, 25651165 - 25651309
Alignment:
| Q |
257 |
tttgttatgttttgttagttgaagcctaattcaattctctttcacaaactcttgaaactctttagaagttaattcatatcctcggtacgtccatatagct |
356 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
25651165 |
tttgttctgttttgttagttgaagcctaattcaattatctttcacaaactcttgaaactctttagaagttaattcacatcttcggtacgtccatatagct |
25651264 |
T |
|
| Q |
357 |
tttatctgcaagctggttctctcgattgtacctttgttattcttg |
401 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
25651265 |
tttatctgcaagctggttctctcgatagtacctttgttattcttg |
25651309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 83 - 177
Target Start/End: Original strand, 25359106 - 25359199
Alignment:
| Q |
83 |
tcttgtggtgtttttcacacacttattgttggagatctattagttaattcgactacacacgccacaacttcaaccccacaattattttggtagtt |
177 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
25359106 |
tcttgtgatgtttttcacacactaattgttggagatctattagttaattagactacacacgccacaacttcaa-ccaacaattattttggtagtt |
25359199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 83 - 177
Target Start/End: Original strand, 25399139 - 25399232
Alignment:
| Q |
83 |
tcttgtggtgtttttcacacacttattgttggagatctattagttaattcgactacacacgccacaacttcaaccccacaattattttggtagtt |
177 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| || | |||||||||||||||| |
|
|
| T |
25399139 |
tcttgtgatgtttttcacacactaattgttggagatctattagttaattagactacacacgccacaacttcaa-ccaataattattttggtagtt |
25399232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 323 - 379
Target Start/End: Original strand, 25359196 - 25359256
Alignment:
| Q |
323 |
agttaattcatatcctcggtacgtccatatagctt----ttatctgcaagctggttctctc |
379 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
25359196 |
agttaattcatatcctcggtacgtccatatagcttttaattatctgcaagctggttctctc |
25359256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 323 - 379
Target Start/End: Original strand, 25399229 - 25399289
Alignment:
| Q |
323 |
agttaattcatatcctcggtacgtccatatagctt----ttatctgcaagctggttctctc |
379 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
25399229 |
agttaattcatatcctcggtacgtccatatagcttttaattatctgcaagctggttctctc |
25399289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 419 - 454
Target Start/End: Original strand, 25495379 - 25495414
Alignment:
| Q |
419 |
cttatgatctctgcttcaacgtatgatctctgcttc |
454 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| |
|
|
| T |
25495379 |
cttatgatctctgcttcaacttatgatctctgcttc |
25495414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 80
Target Start/End: Original strand, 25359006 - 25359046
Alignment:
| Q |
40 |
tttctagctcttctcgtctggtttggctttcttatcgtcta |
80 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
25359006 |
tttctagctcttgtcgtcaagtttggctttcttatcgtcta |
25359046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 80
Target Start/End: Original strand, 25618050 - 25618090
Alignment:
| Q |
40 |
tttctagctcttctcgtctggtttggctttcttatcgtcta |
80 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
25618050 |
tttctagctcttgtcgtcaagtttggctttcttatcgtcta |
25618090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0466 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: scaffold0466
Description:
Target: scaffold0466; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 83 - 397
Target Start/End: Complemental strand, 6314 - 5996
Alignment:
| Q |
83 |
tcttgtggtgtttttcacacacttattgttggagatctattagttaattcgactacacacgccacaacttcaaccccacaattattttggtagtttctta |
182 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
6314 |
tcttgtggtgtttttcacacacttattgttggagatctattagttaattagactacacacgccacaacttcaaccc-acaattattttggtagtttctta |
6216 |
T |
|
| Q |
183 |
cttttgagcatgattcgagtca-----tatcaagaattgttctaattttccttcctaaaaatcatggttccaaccataatttgttatgttttgttagttg |
277 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6215 |
cttttgagcatgattcgagccaagccatatcaagaattgttctaattttccttcctaaaaatcatggttccaaccataatttgttatgttttgttagttg |
6116 |
T |
|
| Q |
278 |
aagcctaattcaattctctttcacaaactcttgaaactctttagaagttaattcatatcctcggtacgtccatatagcttttatctgcaagctggttctc |
377 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
6115 |
aagcctaattcaattctctttcacaaactcttgaaactctttagaagttaattcatatcctcggtacgtccatatagcttttatctgtaagctggttctc |
6016 |
T |
|
| Q |
378 |
tcgattgtacctttgttatt |
397 |
Q |
| |
|
|||||| ||||||||||||| |
|
|
| T |
6015 |
tcgattttacctttgttatt |
5996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0466; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 80
Target Start/End: Complemental strand, 6414 - 6374
Alignment:
| Q |
40 |
tttctagctcttctcgtctggtttggctttcttatcgtcta |
80 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
6414 |
tttctagctcttgtcgtcaagtttggctttcttatcgtcta |
6374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1041 (Bit Score: 135; Significance: 4e-70; HSPs: 1)
Name: scaffold1041
Description:
Target: scaffold1041; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 191 - 401
Target Start/End: Complemental strand, 549 - 348
Alignment:
| Q |
191 |
catgattcgagtcatatcaagaattgttctaattttccttcctaaaaatcatggttccaaccataatttgttatgttttgttagttgaagcctaattcaa |
290 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
549 |
catgattcgagccatatcaagaattgttctaattttccttcctaaaaagaatggttcggaccataatttgttctgttttgttagttgaagcctaattcaa |
450 |
T |
|
| Q |
291 |
ttctctttcacaaactcttgaaactctttagaagttaattcatatcctcggtacgtccatatagcttttatctgcaagctggttctctcgattgtacctt |
390 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || || ||| |
|
|
| T |
449 |
ttctctttca---------gaaactctttagaagttaatccatatcctcggtacgtccatatagcttttatctgcaagctggttctctccataatagctt |
359 |
T |
|
| Q |
391 |
tgttattcttg |
401 |
Q |
| |
|
||||||||||| |
|
|
| T |
358 |
tgttattcttg |
348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 15673487 - 15673539
Alignment:
| Q |
167 |
ttttggtagtttcttacttttgagcatgattcgagtcatatcaagaattgttc |
219 |
Q |
| |
|
||||||||| |||||||||||||||||| |||||| ||||||||| ||||||| |
|
|
| T |
15673487 |
ttttggtagattcttacttttgagcatgcttcgagccatatcaagtattgttc |
15673539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 100 - 207
Target Start/End: Complemental strand, 32973519 - 32973413
Alignment:
| Q |
100 |
cacacttattgttggagatctattagttaattcgactacacacgccacaacttcaaccccacaattattttggtagtttcttacttttgagcatgattcg |
199 |
Q |
| |
|
||||||| |||||||||||||||||| || | |||| |||| | ||||||||||| |||| |||| ||||||||||||||| |||||| || | |||| |
|
|
| T |
32973519 |
cacacttcttgttggagatctattagatagatagactgcacatgtcacaacttcaa-cccaaaattcttttggtagtttcttgattttgaccaagcttcg |
32973421 |
T |
|
| Q |
200 |
agtcatat |
207 |
Q |
| |
|
|| ||||| |
|
|
| T |
32973420 |
agccatat |
32973413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University