View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12264_low_1 (Length: 638)
Name: NF12264_low_1
Description: NF12264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12264_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 473; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 99 - 615
Target Start/End: Complemental strand, 41676158 - 41675642
Alignment:
| Q |
99 |
gaagtactcacccaatcaacaccttctctatactcatggaaaaaaccaacttcttgcgcgcctccaaagcaaaatacattgatagggctaccaagatcaa |
198 |
Q |
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| T |
41676158 |
gaagtactcacccaatcaacaccttctctatactcatggaaaaaaccaacttcttgcgcgcctccaaagcaaaatacattgatagggctaccaagatcaa |
41676059 |
T |
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| Q |
199 |
ctgcgccagaaaacttactatcagcggcagtaccatgtatgtatctaggagagataaccataacacggtgtccgcgacccgccagtgctattggcaaaga |
298 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
41676058 |
ctgcaccagaaaacttactatcagcggcagtaccatgtatgtatctaggagagataaccataacacggtggccgcgacccgccagtgctattggcaaaga |
41675959 |
T |
|
| Q |
299 |
accacaaacatctgccaggccaccggtcttagaatacggtgcagcttcagatgtaacaaaaacaatgttgcgggttactatagtttgagccttctcgtct |
398 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41675958 |
accacaaacatctgcaaggccaccggtcttagaatacggtgcagcttcagatgtaacaaaaacaatgttgcgggttactatagtttgagccttctcgtct |
41675859 |
T |
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| Q |
399 |
tctgcattcccaatctctggtttttcaacttcatcgctccttaaattcccttgagtttcagcagttttccctgcatgtaatgctcccataaaatcttcat |
498 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41675858 |
tctgcattcccaatctctggtttttcaacttcatcgctccttaaattcccttgagtttcagcagttttccctgcatgtaatgctcccataaaatcttcat |
41675759 |
T |
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| Q |
499 |
gactagtcaaaaatcataacaacagtgtaattannnnnnnnaaatggtaaatgttagtaattagttattagaaatattattgttaatgataatcctcaat |
598 |
Q |
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| T |
41675758 |
gacaagtcaaaaatcataacaacagtgtaattattttttttaaatggtaaatgttagtaattagttattagaaatattagtgttaatgataatcctcaat |
41675659 |
T |
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| Q |
599 |
accttatgtctccaatc |
615 |
Q |
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| T |
41675658 |
accttatgtctccaatc |
41675642 |
T |
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Back To:
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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 541 - 570
Target Start/End: Complemental strand, 26055561 - 26055532
Alignment:
| Q |
541 |
aatggtaaatgttagtaattagttattaga |
570 |
Q |
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| T |
26055561 |
aatggtaaatgttagtaattagttattaga |
26055532 |
T |
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