View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12264_low_3 (Length: 400)

Name: NF12264_low_3
Description: NF12264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12264_low_3
NF12264_low_3
[»] chr1 (28 HSPs)
chr1 (173-351)||(15204516-15204694)
chr1 (11-163)||(17006642-17006794)
chr1 (11-163)||(34159297-34159449)
chr1 (174-332)||(15214254-15214408)
chr1 (232-349)||(16222763-16222876)
chr1 (271-347)||(3399642-3399718)
chr1 (270-332)||(5911683-5911745)
chr1 (227-348)||(13208591-13208709)
chr1 (227-320)||(37097371-37097460)
chr1 (270-349)||(12189971-12190050)
chr1 (232-332)||(51758738-51758834)
chr1 (174-312)||(15193848-15193980)
chr1 (272-331)||(897476-897535)
chr1 (270-332)||(28636922-28636984)
chr1 (227-332)||(1843933-1844033)
chr1 (136-174)||(42025522-42025560)
chr1 (136-173)||(40702369-40702406)
chr1 (272-332)||(17112946-17113006)
chr1 (349-384)||(15194072-15194107)
chr1 (349-384)||(15204757-15204792)
chr1 (349-384)||(15214490-15214525)
chr1 (123-173)||(19066023-19066073)
chr1 (123-173)||(19113913-19113963)
chr1 (272-328)||(39368663-39368719)
chr1 (123-174)||(22538145-22538196)
chr1 (136-169)||(1366103-1366136)
chr1 (134-166)||(3838460-3838492)
chr1 (123-175)||(8313151-8313203)
[»] chr5 (25 HSPs)
chr5 (11-174)||(29866023-29866186)
chr5 (11-160)||(4061932-4062081)
chr5 (11-166)||(7333085-7333240)
chr5 (11-163)||(8128582-8128734)
chr5 (227-349)||(17037523-17037641)
chr5 (227-332)||(5079083-5079184)
chr5 (227-332)||(31068982-31069082)
chr5 (227-332)||(7410804-7410905)
chr5 (270-332)||(9333580-9333642)
chr5 (270-332)||(12042196-12042258)
chr5 (227-349)||(23679421-23679539)
chr5 (227-349)||(23855272-23855390)
chr5 (272-339)||(40402021-40402088)
chr5 (132-174)||(7928349-7928391)
chr5 (270-332)||(9354408-9354470)
chr5 (272-330)||(10869458-10869516)
chr5 (270-332)||(19985014-19985076)
chr5 (270-332)||(30786286-30786348)
chr5 (280-347)||(37233061-37233128)
chr5 (123-173)||(33014349-33014399)
chr5 (282-332)||(42076078-42076128)
chr5 (270-311)||(18191889-18191930)
chr5 (136-173)||(23547478-23547515)
chr5 (139-175)||(4956070-4956106)
chr5 (227-272)||(31406426-31406471)
[»] chr8 (38 HSPs)
chr8 (11-173)||(37251314-37251476)
chr8 (11-174)||(16250188-16250351)
chr8 (11-163)||(30369891-30370043)
chr8 (11-174)||(23524998-23525161)
chr8 (11-174)||(34800586-34800753)
chr8 (11-112)||(16313398-16313499)
chr8 (227-349)||(5528723-5528841)
chr8 (227-333)||(25638787-25638889)
chr8 (227-332)||(28249094-28249195)
chr8 (227-351)||(25637624-25637744)
chr8 (231-350)||(17634472-17634587)
chr8 (227-349)||(19369912-19370030)
chr8 (227-349)||(19448428-19448546)
chr8 (227-349)||(19532530-19532648)
chr8 (227-332)||(45356131-45356232)
chr8 (227-349)||(18766897-18767015)
chr8 (272-332)||(6801849-6801909)
chr8 (270-332)||(6403612-6403674)
chr8 (270-332)||(29345450-29345512)
chr8 (272-333)||(5650963-5651024)
chr8 (119-166)||(16313860-16313907)
chr8 (270-346)||(31347368-31347444)
chr8 (136-174)||(8362217-8362255)
chr8 (136-174)||(17884686-17884724)
chr8 (270-332)||(29553648-29553710)
chr8 (138-175)||(4932142-4932179)
chr8 (283-349)||(5000711-5000777)
chr8 (132-174)||(15278120-15278162)
chr8 (132-174)||(15458489-15458531)
chr8 (133-175)||(21589316-21589358)
chr8 (136-174)||(22997423-22997461)
chr8 (132-174)||(23142182-23142224)
chr8 (123-174)||(357271-357322)
chr8 (136-174)||(15630188-15630226)
chr8 (132-166)||(41529082-41529116)
chr8 (136-174)||(43217951-43217989)
chr8 (132-173)||(13756203-13756244)
chr8 (272-333)||(14997642-14997703)
[»] scaffold0012 (1 HSPs)
scaffold0012 (12-174)||(31174-31336)
[»] scaffold0268 (1 HSPs)
scaffold0268 (11-174)||(20012-20175)
[»] chr4 (24 HSPs)
chr4 (11-163)||(26290147-26290299)
chr4 (11-163)||(55049815-55049967)
chr4 (227-332)||(47066053-47066154)
chr4 (227-332)||(53300331-53300432)
chr4 (227-349)||(1684954-1685072)
chr4 (227-332)||(43600247-43600348)
chr4 (227-349)||(1152024-1152142)
chr4 (270-351)||(24558995-24559076)
chr4 (272-329)||(48464061-48464118)
chr4 (272-348)||(4881072-4881148)
chr4 (272-332)||(4904159-4904219)
chr4 (136-174)||(14248900-14248938)
chr4 (270-327)||(21539295-21539352)
chr4 (11-159)||(11793071-11793218)
chr4 (138-174)||(13914874-13914910)
chr4 (136-174)||(42616670-42616708)
chr4 (132-174)||(50814455-50814497)
chr4 (123-167)||(281503-281547)
chr4 (132-166)||(13228360-13228394)
chr4 (136-174)||(24183808-24183846)
chr4 (133-175)||(42757967-42758009)
chr4 (298-347)||(21317485-21317534)
chr4 (276-332)||(18941677-18941733)
chr4 (133-161)||(39974421-39974449)
[»] scaffold0119 (1 HSPs)
scaffold0119 (11-173)||(40355-40517)
[»] chr3 (35 HSPs)
chr3 (11-173)||(19817554-19817716)
chr3 (227-348)||(2550146-2550263)
chr3 (231-332)||(13845976-13846073)
chr3 (235-349)||(1627949-1628059)
chr3 (227-332)||(7407773-7407874)
chr3 (272-349)||(26707880-26707957)
chr3 (227-332)||(1654556-1654657)
chr3 (270-349)||(5498497-5498576)
chr3 (270-332)||(16457350-16457412)
chr3 (274-329)||(2943236-2943291)
chr3 (270-332)||(1613232-1613294)
chr3 (272-332)||(36035310-36035370)
chr3 (272-322)||(27259474-27259524)
chr3 (132-174)||(34854631-34854673)
chr3 (136-174)||(38358065-38358103)
chr3 (136-176)||(6435576-6435616)
chr3 (272-332)||(9633461-9633521)
chr3 (138-173)||(10019158-10019193)
chr3 (298-349)||(26735681-26735732)
chr3 (136-174)||(9261130-9261168)
chr3 (275-333)||(35083000-35083058)
chr3 (125-166)||(17763837-17763878)
chr3 (125-166)||(19065157-19065198)
chr3 (136-173)||(20776126-20776163)
chr3 (137-174)||(32976794-32976831)
chr3 (132-177)||(42400681-42400726)
chr3 (138-174)||(35683478-35683514)
chr3 (123-174)||(20788203-20788254)
chr3 (123-174)||(30171452-30171503)
chr3 (272-322)||(36035040-36035090)
chr3 (136-174)||(37197730-37197768)
chr3 (132-166)||(50239318-50239352)
chr3 (136-166)||(55367862-55367892)
chr3 (123-179)||(12746462-12746518)
chr3 (283-347)||(27713443-27713507)
[»] chr6 (31 HSPs)
chr6 (11-174)||(20872243-20872406)
chr6 (12-161)||(9453023-9453172)
chr6 (98-173)||(23410278-23410352)
chr6 (227-349)||(14669348-14669466)
chr6 (227-332)||(11936786-11936887)
chr6 (227-332)||(16734785-16734886)
chr6 (234-349)||(12591820-12591931)
chr6 (227-349)||(17719725-17719843)
chr6 (227-332)||(15361695-15361796)
chr6 (227-349)||(6684074-6684191)
chr6 (272-349)||(23264498-23264575)
chr6 (270-332)||(11948766-11948828)
chr6 (230-332)||(15690421-15690519)
chr6 (256-332)||(29667934-29668008)
chr6 (274-349)||(34374848-34374925)
chr6 (132-173)||(4791913-4791954)
chr6 (272-320)||(30481259-30481307)
chr6 (271-332)||(4485584-4485645)
chr6 (272-333)||(10935799-10935860)
chr6 (272-328)||(9631178-9631234)
chr6 (138-174)||(21058867-21058903)
chr6 (272-332)||(23904371-23904431)
chr6 (136-174)||(4848849-4848887)
chr6 (123-173)||(33350571-33350621)
chr6 (270-347)||(10070674-10070751)
chr6 (136-173)||(29964762-29964799)
chr6 (138-174)||(15872587-15872623)
chr6 (270-333)||(1942588-1942651)
chr6 (136-175)||(15683412-15683451)
chr6 (132-174)||(28365451-28365493)
chr6 (11-52)||(23410238-23410279)
[»] chr7 (19 HSPs)
chr7 (13-174)||(29912350-29912511)
chr7 (227-349)||(26224980-26225098)
chr7 (227-349)||(9242486-9242604)
chr7 (227-332)||(4685422-4685523)
chr7 (227-332)||(26205434-26205535)
chr7 (227-335)||(16170251-16170355)
chr7 (235-332)||(10022112-10022205)
chr7 (275-332)||(26608558-26608615)
chr7 (272-328)||(30089756-30089812)
chr7 (270-332)||(20277379-20277441)
chr7 (272-350)||(26619105-26619182)
chr7 (136-174)||(33940474-33940512)
chr7 (136-173)||(18294101-18294138)
chr7 (272-333)||(26621109-26621170)
chr7 (135-174)||(17475019-17475058)
chr7 (135-174)||(17578156-17578195)
chr7 (123-166)||(29502506-29502549)
chr7 (274-332)||(16086510-16086568)
chr7 (275-324)||(3374325-3374374)
[»] chr2 (20 HSPs)
chr2 (77-173)||(4774913-4775009)
chr2 (227-332)||(30266983-30267084)
chr2 (228-332)||(44920939-44921038)
chr2 (242-349)||(7718180-7718283)
chr2 (237-332)||(31342735-31342826)
chr2 (270-332)||(41573412-41573474)
chr2 (274-332)||(15513690-15513748)
chr2 (272-347)||(11017478-11017553)
chr2 (272-332)||(24479173-24479233)
chr2 (274-332)||(40016614-40016672)
chr2 (119-166)||(29978111-29978158)
chr2 (136-173)||(27203027-27203064)
chr2 (136-173)||(27858174-27858211)
chr2 (132-173)||(41754759-41754800)
chr2 (272-332)||(7702450-7702510)
chr2 (272-324)||(27151259-27151311)
chr2 (134-174)||(45658147-45658187)
chr2 (134-173)||(2593329-2593368)
chr2 (136-174)||(3573036-3573074)
chr2 (123-163)||(24967721-24967761)
[»] scaffold0069 (1 HSPs)
scaffold0069 (227-349)||(40700-40818)
[»] scaffold0576 (1 HSPs)
scaffold0576 (227-332)||(6679-6780)
[»] scaffold0684 (1 HSPs)
scaffold0684 (227-349)||(749-867)
[»] scaffold0284 (1 HSPs)
scaffold0284 (132-166)||(3045-3079)
[»] scaffold0029 (1 HSPs)
scaffold0029 (123-173)||(15683-15733)
[»] scaffold0229 (1 HSPs)
scaffold0229 (136-169)||(24616-24649)
[»] scaffold0131 (1 HSPs)
scaffold0131 (125-161)||(17329-17365)


Alignment Details
Target: chr1 (Bit Score: 159; Significance: 1e-84; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 173 - 351
Target Start/End: Original strand, 15204516 - 15204694
Alignment:
Q  173 ttggaaagctaagcagtaacatttagacaaaggtcaagcatttaagtatggaatactactacaataatgacatttaataatacttgaaaattgtaactaa 272  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  15204516 ttggaaagctaagcagtaacatttagacaaaggtcaagcatttaagtatggaatactactacaataatgacatttaataatatttgaaaattgtaactaa 15204615  T
Q  273 ctaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgttaggtaaaatctgtgctactaaagaat 351  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  | ||||||||||||    
T  15204616 ctaaatcaagaaaaatgttgctaactaaatttagtaacacttgaacaattgttaggtaaaatccattctactaaagaat 15204694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 11 - 163
Target Start/End: Original strand, 17006642 - 17006794
Alignment:
Q  11 gctatgataccattgttgggccttacgagggaaccaacactggcatggattgacccattgtacagagaacaaccagacaaatgaaaatgatatcaaatct 110  Q
    |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||    
T  17006642 gctatgataccattgttgggccttacgagggagccaacactgacatggattgacccattgcagagagaacaaccagacaaatgagaatgatatcaaatct 17006741  T
Q  111 ttaattactattttaaatatcacgaaattctagcccgtgcttggcacgggttt 163  Q
    ||| ||| ||||||||||||||||||||||||| | ||| ||| |||||||||    
T  17006742 ttacttaatattttaaatatcacgaaattctagtctgtgtttgacacgggttt 17006794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 11 - 163
Target Start/End: Complemental strand, 34159449 - 34159297
Alignment:
Q  11 gctatgataccattgttgggccttacgagggaaccaacactggcatggattgacccattgtacagagaacaaccagacaaatgaaaatgatatcaaatct 110  Q
    |||||||||||||||||||| |||||||| || ||||||||  ||| ||||||||||||| ||||||||||||||||||||||| |||||||| ||||||    
T  34159449 gctatgataccattgttgggtcttacgagtgagccaacactttcattgattgacccattgcacagagaacaaccagacaaatgagaatgatattaaatct 34159350  T
Q  111 ttaattactattttaaatatcacgaaattctagcccgtgcttggcacgggttt 163  Q
    ||| ||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  34159349 ttacttaatattttaaatatcacgaaattctagcccgtgcttgacacgggttt 34159297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 174 - 332
Target Start/End: Original strand, 15214254 - 15214408
Alignment:
Q  174 tggaaagctaagcagtaacatttagacaaaggtcaagcatttaagtatggaatactactacaataatgacatttaataatacttgaaaattgtaactaac 273  Q
    |||||||||||| ||||||||||| ||||||||||||||||||||||||||  ||||||||||||| | |||||| ||| ||||||||||||     |||    
T  15214254 tggaaagctaagtagtaacatttacacaaaggtcaagcatttaagtatggatcactactacaataacggcatttagtaacacttgaaaattg----caac 15214349  T
Q  274 taaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgttaggtaaa 332  Q
    ||||||||||||||| || ||||||||||||||||| | ||||||||||||| ||||||    
T  15214350 taaatcaagaaaaattttactaattaaatttagtaatatttgaacaattgttgggtaaa 15214408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 232 - 349
Target Start/End: Original strand, 16222763 - 16222876
Alignment:
Q  232 tacaataatgacatttaataatacttgaaaattgtaactaactaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgttaggtaa 331  Q
    ||||||||||||||||| ||| | ||||||||||||||    |||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||    
T  16222763 tacaataatgacatttagtaacatttgaaaattgtaac----taaatcaagaaaaatgttactaataaaatttagtaacacttgaataattgttaggtaa 16222858  T
Q  332 aatctgtgctactaaaga 349  Q
    |  | ||| |||||||||    
T  16222859 agcccgtgttactaaaga 16222876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 271 - 347
Target Start/End: Original strand, 3399642 - 3399718
Alignment:
Q  271 aactaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgttaggtaaaatctgtgctactaaa 347  Q
    |||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||||| || |||||||    
T  3399642 aactaaatcatgaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaaatctatgttactaaa 3399718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 270 - 332
Target Start/End: Complemental strand, 5911745 - 5911683
Alignment:
Q  270 taactaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgttaggtaaa 332  Q
    |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  5911745 taactaaatcaagaaaaatgttactgattaaatttagtaacacttgaacaattgttaggtaaa 5911683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 227 - 348
Target Start/End: Original strand, 13208591 - 13208709
Alignment:
Q  227 actactacaataatgacatttaataatactt-gaaaattgtaactaactaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgtt 325  Q
    ||||||||||| |||| ||||| |||||||| ||||||||||| |||    || |||||||||||| |||||||||||||||| ||||||||| ||||||    
T  13208591 actactacaatgatgatatttagtaatactttgaaaattgtaattaa----attaagaaaaatgttactaattaaatttagtaccacttgaaccattgtt 13208686  T
Q  326 aggtaaaatctgtgctactaaag 348  Q
    |||||||| | ||| ||||||||    
T  13208687 aggtaaaacccgtgttactaaag 13208709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 227 - 320
Target Start/End: Complemental strand, 37097460 - 37097371
Alignment:
Q  227 actactacaataatgacatttaataatacttgaaaattgtaactaactaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaa 320  Q
    |||||||||||||||||||||| ||| |||||||||||||||    ||||||||||||||||||| || || ||||||||||||| ||||||||    
T  37097460 actactacaataatgacatttagtaacacttgaaaattgtaa----ctaaatcaagaaaaatgttactgataaaatttagtaacatttgaacaa 37097371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 270 - 349
Target Start/End: Original strand, 12189971 - 12190050
Alignment:
Q  270 taactaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgttaggtaaaatctgtgctactaaaga 349  Q
    ||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||  | ||| |||||||||    
T  12189971 taactaaatcaagaaaaatattactaattaaatttagtaacatttgaacaattgttaggtaaagcccgtgttactaaaga 12190050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 232 - 332
Target Start/End: Original strand, 51758738 - 51758834
Alignment:
Q  232 tacaataatgacatttaataatacttgaaaattgtaactaactaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgttaggtaa 331  Q
    ||||||||||||||||| ||| | ||||||||||||||    ||||||||||||||||||  ||||||||||||| |||||| |||||||| ||||||||    
T  51758738 tacaataatgacatttagtaacatttgaaaattgtaac----taaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattattaggtaa 51758833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 174 - 312
Target Start/End: Original strand, 15193848 - 15193980
Alignment:
Q  174 tggaaagctaagcagtaacatttagacaaaggtcaagca-tttaagtatggaatactactacaataatgacatttaataatacttgaaaattgtaactaa 272  Q
    |||||||||||| ||||||||||| |||||||||||||| ||||||||| ||  ||||||   |||| |||||||| ||| ||||||||||    |  ||    
T  15193848 tggaaagctaagtagtaacatttacacaaaggtcaagcattttaagtatagataactact---ataacgacatttagtaacacttgaaaat----agcaa 15193940  T
Q  273 ctaaatcaagaaaaatgttgctaattaaatttagtaacac 312  Q
    | ||||||||||||||||| ||||||||||||| ||||||    
T  15193941 cgaaatcaagaaaaatgttactaattaaatttattaacac 15193980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 272 - 331
Target Start/End: Original strand, 897476 - 897535
Alignment:
Q  272 actaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgttaggtaa 331  Q
    ||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  897476 actaaatgaagaaaaatgttcctaattaaatttagtaacaattgaacaattgttaggtaa 897535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 270 - 332
Target Start/End: Original strand, 28636922 - 28636984
Alignment:
Q  270 taactaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgttaggtaaa 332  Q
    |||||||||||||||||||||| |||||| |||||||||||| ||||| ||||||||||||||    
T  28636922 taactaaatcaagaaaaatgttactaattcaatttagtaacatttgaataattgttaggtaaa 28636984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 227 - 332
Target Start/End: Original strand, 1843933 - 1844033
Alignment:
Q  227 actactacaataatgacatttaataatacttgaaaattgtaactaactaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgtta 326  Q
    ||||||||||||||||| |||| ||| |||| ||||||||||||     ||| |||||||||||| || ||| |||||||||||| ||||||||||||||    
T  1843933 actactacaataatgacctttagtaacactt-aaaattgtaactgg---aat-aagaaaaatgttactgattgaatttagtaacatttgaacaattgtta 1844027  T
Q  327 ggtaaa 332  Q
    ||||||    
T  1844028 ggtaaa 1844033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 136 - 174
Target Start/End: Complemental strand, 42025560 - 42025522
Alignment:
Q  136 aattctagcccgtgcttggcacgggtttccaagctagtt 174  Q
    |||||||||||||||||||||||||||||||||||||||    
T  42025560 aattctagcccgtgcttggcacgggtttccaagctagtt 42025522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 173
Target Start/End: Original strand, 40702369 - 40702406
Alignment:
Q  136 aattctagcccgtgcttggcacgggtttccaagctagt 173  Q
    ||||||||||||||||||||||||||||||||||||||    
T  40702369 aattctagcccgtgcttggcacgggtttccaagctagt 40702406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 272 - 332
Target Start/End: Original strand, 17112946 - 17113006
Alignment:
Q  272 actaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgttaggtaaa 332  Q
    |||||||||||||||||  | ||| |||||||| |||||||||||||||||||||| ||||    
T  17112946 actaaatcaagaaaaatagtactagttaaattttgtaacacttgaacaattgttagttaaa 17113006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 349 - 384
Target Start/End: Original strand, 15194072 - 15194107
Alignment:
Q  349 aatcataccaattctaagcaagataacgatacaatt 384  Q
    ||||||||||||||||||||||||||||||||||||    
T  15194072 aatcataccaattctaagcaagataacgatacaatt 15194107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 349 - 384
Target Start/End: Original strand, 15204757 - 15204792
Alignment:
Q  349 aatcataccaattctaagcaagataacgatacaatt 384  Q
    ||||||||||||||||||||||||||||||||||||    
T  15204757 aatcataccaattctaagcaagataacgatacaatt 15204792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 349 - 384
Target Start/End: Original strand, 15214490 - 15214525
Alignment:
Q  349 aatcataccaattctaagcaagataacgatacaatt 384  Q
    ||||||||||||||||||||||||||||||||||||    
T  15214490 aatcataccaattctaagcaagataacgatacaatt 15214525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 173
Target Start/End: Original strand, 19066023 - 19066073
Alignment:
Q  123 ttaaatatcacgaaattctagcccgtgcttggcacgggtttccaagctagt 173  Q
    |||||| | |||||| |||||||||||||||||||||||||||| ||||||    
T  19066023 ttaaatttgacgaaagtctagcccgtgcttggcacgggtttccatgctagt 19066073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 173
Target Start/End: Original strand, 19113913 - 19113963
Alignment:
Q  123 ttaaatatcacgaaattctagcccgtgcttggcacgggtttccaagctagt 173  Q
    |||||| | |||||| |||||||||||||||||||||||||||| ||||||    
T  19113913 ttaaatttgacgaaagtctagcccgtgcttggcacgggtttccatgctagt 19113963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 328
Target Start/End: Complemental strand, 39368719 - 39368663
Alignment:
Q  272 actaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgttagg 328  Q
    |||||||||||||||||||| ||||||||| ||||| ||| ||  ||||||||||||    
T  39368719 actaaatcaagaaaaatgttactaattaaaattagtcacatttatacaattgttagg 39368663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 123 - 174
Target Start/End: Complemental strand, 22538196 - 22538145
Alignment:
Q  123 ttaaatatcacgaaattctagcccgtgcttggcacgggtttccaagctagtt 174  Q
    |||||| | |||||| |||||| ||||||||||||||||||||| |||||||    
T  22538196 ttaaatttgacgaaagtctagctcgtgcttggcacgggtttccatgctagtt 22538145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 169
Target Start/End: Original strand, 1366103 - 1366136
Alignment:
Q  136 aattctagcccgtgcttggcacgggtttccaagc 169  Q
    ||||||||||||||||||||||| ||||||||||    
T  1366103 aattctagcccgtgcttggcacgagtttccaagc 1366136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 134 - 166
Target Start/End: Original strand, 3838460 - 3838492
Alignment:
Q  134 gaaattctagcccgtgcttggcacgggtttcca 166  Q
    |||||||||||||||||||||||||||| ||||    
T  3838460 gaaattctagcccgtgcttggcacgggtatcca 3838492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 175
Target Start/End: Complemental strand, 8313203 - 8313151
Alignment:
Q  123 ttaaatatcacgaaattctagcccgtgcttggcacgggtttccaagctagttg 175  Q
    |||||| | ||| |||||||||||||||||||||||| | |||| ||||||||    
T  8313203 ttaaatttgacggaattctagcccgtgcttggcacggatgtccatgctagttg 8313151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 148; Significance: 5e-78; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 11 - 174
Target Start/End: Original strand, 29866023 - 29866186
Alignment:
Q  11 gctatgataccattgttgggccttacgagggaaccaacactggcatggattgacccattgtacagagaacaaccagacaaatgaaaatgatatcaaatct 110  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  29866023 gctatgataccattgttgggccttacgagggagccaacactggcatggattgacccattgcacaaagaacaaccagacaaatgaaaatgatatcaaatct 29866122  T
Q  111 ttaattactattttaaatatcacgaaattctagcccgtgcttggcacgggtttccaagctagtt 174  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29866123 ttaattaatattttaaatatcacgaaattctagcccgtgcttggcacgggtttccaagctagtt 29866186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 11 - 160
Target Start/End: Complemental strand, 4062081 - 4061932
Alignment:
Q  11 gctatgataccattgttgggccttacgagggaaccaacactggcatggattgacccattgtacagagaacaaccagacaaatgaaaatgatatcaaatct 110  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  4062081 gctatgataccattgttgggccttacgagggagccaacactggcatggattgacccattgcacagagaacaaccagacaaatgagaatgatatcaaatct 4061982  T
Q  111 ttaattactattttaaatatcacgaaattctagcccgtgcttggcacggg 160  Q
    ||| ||| |||||||||||||||||||||||||||||| |||||||||||    
T  4061981 ttacttaatattttaaatatcacgaaattctagcccgtacttggcacggg 4061932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 11 - 166
Target Start/End: Original strand, 7333085 - 7333240
Alignment:
Q  11 gctatgataccattgttgggccttacgagggaaccaacactggcatggattgacccattgtacagagaacaaccagacaaatgaaaatgatatcaaatct 110  Q
    ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  7333085 gctataataccattgttgggccttacgagggagccaacactggcatggattgacccattgcacagagaacaaccagacaaatgagaatgatatcaaatct 7333184  T
Q  111 ttaattactattttaaatatcacgaaattctagcccgtgcttggcacgggtttcca 166  Q
    ||| ||| |||||||||||||||||||||||||| |||| ||||||||||||||||    
T  7333185 ttacttaatattttaaatatcacgaaattctagctcgtgtttggcacgggtttcca 7333240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 11 - 163
Target Start/End: Original strand, 8128582 - 8128734
Alignment:
Q  11 gctatgataccattgttgggccttacgagggaaccaacactggcatggattgacccattgtacagagaacaaccagacaaatgaaaatgatatcaaatct 110  Q
    |||||||||||||||||||| |||||||| || |||||||| |||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  8128582 gctatgataccattgttgggtcttacgagtgagccaacactagcattgattgacccattgcacagagaacaaccagacaaatgagaatgatatcaaatct 8128681  T
Q  111 ttaattactattttaaatatcacgaaattctagcccgtgcttggcacgggttt 163  Q
    ||| ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  8128682 ttacttaatattttaaatatcacgaaattctagcccgtgcttggcacgggttt 8128734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 227 - 349
Target Start/End: Original strand, 17037523 - 17037641
Alignment:
Q  227 actactacaataatgacatttaataatacttgaaaattgtaactaactaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgtta 326  Q
    |||||||||||||||||||||| ||| |||||||||| |||||    |||||||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  17037523 actactacaataatgacatttagtaacacttgaaaatcgtaac----taaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgtta 17037618  T
Q  327 ggtaaaatctgtgctactaaaga 349  Q
    |||||| || ||| |||||||||    
T  17037619 ggtaaagtcagtgttactaaaga 17037641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 227 - 332
Target Start/End: Complemental strand, 5079184 - 5079083
Alignment:
Q  227 actactacaataatgacatttaataatacttgaaaattgtaactaactaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgtta 326  Q
    |||||||||||||||||| ||| ||| |||||||||||||||||||    ||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  5079184 actactacaataatgacaattagtaacacttgaaaattgtaactaa----atcaagaaaaatgttactaattaaatttagcaacacttgaacaattgtta 5079089  T
Q  327 ggtaaa 332  Q
    ||||||    
T  5079088 ggtaaa 5079083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 227 - 332
Target Start/End: Complemental strand, 31069082 - 31068982
Alignment:
Q  227 actactacaataatgacatttaataatacttgaaaattgtaactaactaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgtta 326  Q
    |||||||||||||||||||||| ||| |||| ||||||||||||||    ||||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  31069082 actactacaataatgacatttagtaacacttaaaaattgtaactaa----atcaagaaaaatgttactaattaaatttagtaaca-ttgaacaattgtta 31068988  T
Q  327 ggtaaa 332  Q
    ||||||    
T  31068987 ggtaaa 31068982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 227 - 332
Target Start/End: Original strand, 7410804 - 7410905
Alignment:
Q  227 actactacaataatgacatttaataatacttgaaaattgtaactaactaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgtta 326  Q
    |||||||||||||||||| ||| ||| | || |||||||||||    |||||||| ||||||||| |||||||||||||| |||||||||||||||||||    
T  7410804 actactacaataatgacaattagtaacatttcaaaattgtaac----taaatcaaaaaaaatgttactaattaaatttagcaacacttgaacaattgtta 7410899  T
Q  327 ggtaaa 332  Q
    ||||||    
T  7410900 ggtaaa 7410905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 270 - 332
Target Start/End: Complemental strand, 9333642 - 9333580
Alignment:
Q  270 taactaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgttaggtaaa 332  Q
    |||| ||||||||||||||||| ||||||||||||||||||| |||| |||||||||||||||    
T  9333642 taacaaaatcaagaaaaatgttactaattaaatttagtaacatttgagcaattgttaggtaaa 9333580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 270 - 332
Target Start/End: Complemental strand, 12042258 - 12042196
Alignment:
Q  270 taactaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgttaggtaaa 332  Q
    |||||||||||||||||||||| || ||| |||||||||||| ||||||||||||||||||||    
T  12042258 taactaaatcaagaaaaatgttactgattcaatttagtaacatttgaacaattgttaggtaaa 12042196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 227 - 349
Target Start/End: Original strand, 23679421 - 23679539
Alignment:
Q  227 actactacaataatgacatttaataatacttgaaaattgtaactaactaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgtta 326  Q
    ||||||||||||||||||||||  || ||||||||||||    ||||||||||||||||||||||  ||||||||||| | |||| | |||||||| |||    
T  23679421 actactacaataatgacatttagcaacacttgaaaattg----taactaaatcaagaaaaatgttattaattaaattttgcaacattcgaacaattatta 23679516  T
Q  327 ggtaaaatctgtgctactaaaga 349  Q
    | |||| |  ||| |||||||||    
T  23679517 gataaagttcgtgttactaaaga 23679539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 227 - 349
Target Start/End: Complemental strand, 23855390 - 23855272
Alignment:
Q  227 actactacaataatgacatttaataatacttgaaaattgtaactaactaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgtta 326  Q
    ||||||||||||||||||||||  || |||||||||||||||    |||||||||||||||||||  ||||||||||| | |||| | |||||||| |||    
T  23855390 actactacaataatgacatttagcaacacttgaaaattgtaa----ctaaatcaagaaaaatgttattaattaaattttgcaacattcgaacaattatta 23855295  T
Q  327 ggtaaaatctgtgctactaaaga 349  Q
    | |||| |  ||| |||||||||    
T  23855294 gataaagttcgtgttactaaaga 23855272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 272 - 339
Target Start/End: Complemental strand, 40402088 - 40402021
Alignment:
Q  272 actaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgttaggtaaaatctgtg 339  Q
    ||||||| |||||||||||| ||||||||||||||| ||  |||||||||||||||||||| ||||||    
T  40402088 actaaataaagaaaaatgttactaattaaatttagttacgtttgaacaattgttaggtaaagtctgtg 40402021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 132 - 174
Target Start/End: Complemental strand, 7928391 - 7928349
Alignment:
Q  132 acgaaattctagcccgtgcttggcacgggtttccaagctagtt 174  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  7928391 acgaaattctagcccgtgcttggcacgggtttccaagctagtt 7928349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 270 - 332
Target Start/End: Complemental strand, 9354470 - 9354408
Alignment:
Q  270 taactaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgttaggtaaa 332  Q
    ||||| |||||||||||||||| ||||||||||||| ||||| |||| |||||||||||||||    
T  9354470 taactgaatcaagaaaaatgttactaattaaatttaataacatttgagcaattgttaggtaaa 9354408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 272 - 330
Target Start/End: Original strand, 10869458 - 10869516
Alignment:
Q  272 actaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgttaggta 330  Q
    ||||||||| ||||| |||| ||||||||||||||||||| ||||||||||||||||||    
T  10869458 actaaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttaggta 10869516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 270 - 332
Target Start/End: Original strand, 19985014 - 19985076
Alignment:
Q  270 taactaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgttaggtaaa 332  Q
    ||||||||||||| |||||||| ||||||| ||||||||||| ||||| ||||||||||||||    
T  19985014 taactaaatcaaggaaaatgttactaattagatttagtaacatttgaataattgttaggtaaa 19985076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 270 - 332
Target Start/End: Original strand, 30786286 - 30786348
Alignment:
Q  270 taactaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgttaggtaaa 332  Q
    ||||| |||||||||||||||| || ||| |||||||||||| ||||| ||||||||||||||    
T  30786286 taacttaatcaagaaaaatgttactgattcaatttagtaacatttgaataattgttaggtaaa 30786348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 280 - 347
Target Start/End: Original strand, 37233061 - 37233128
Alignment:
Q  280 aagaaaaatgttgctaattaaatttagtaacacttgaacaattgttaggtaaaatctgtgctactaaa 347  Q
    |||||||| ||| ||||||||||||||||||| |||| ||||||||||||| | || ||| |||||||    
T  37233061 aagaaaaaagttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaa 37233128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 173
Target Start/End: Original strand, 33014349 - 33014399
Alignment:
Q  123 ttaaatatcacgaaattctagcccgtgcttggcacgggtttccaagctagt 173  Q
    |||||||| ||||||||||||||||||||| |||||||| ||||| |||||    
T  33014349 ttaaatatgacgaaattctagcccgtgcttagcacgggtgtccaaactagt 33014399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 332
Target Start/End: Original strand, 42076078 - 42076128
Alignment:
Q  282 gaaaaatgttgctaattaaatttagtaacacttgaacaattgttaggtaaa 332  Q
    ||||| |||| ||||||||||||||||||| ||||||||||||||| ||||    
T  42076078 gaaaattgttactaattaaatttagtaacatttgaacaattgttagataaa 42076128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 270 - 311
Target Start/End: Complemental strand, 18191930 - 18191889
Alignment:
Q  270 taactaaatcaagaaaaatgttgctaattaaatttagtaaca 311  Q
    ||||||||| |||||||||||| |||||||||||||||||||    
T  18191930 taactaaattaagaaaaatgttactaattaaatttagtaaca 18191889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 136 - 173
Target Start/End: Original strand, 23547478 - 23547515
Alignment:
Q  136 aattctagcccgtgcttggcacgggtttccaagctagt 173  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  23547478 aattctagcccgtacttggcacgggtttccaagctagt 23547515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 175
Target Start/End: Complemental strand, 4956106 - 4956070
Alignment:
Q  139 tctagcccgtgcttggcacgggtttccaagctagttg 175  Q
    ||||||||||||||||||||||||||||| |||||||    
T  4956106 tctagcccgtgcttggcacgggtttccaaactagttg 4956070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 272
Target Start/End: Complemental strand, 31406471 - 31406426
Alignment:
Q  227 actactacaataatgacatttaataatacttgaaaattgtaactaa 272  Q
    ||||||||||||||||||||||  || | |||||||||||||||||    
T  31406471 actactacaataatgacatttagcaacatttgaaaattgtaactaa 31406426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 143; Significance: 5e-75; HSPs: 38)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 11 - 173
Target Start/End: Original strand, 37251314 - 37251476
Alignment:
Q  11 gctatgataccattgttgggccttacgagggaaccaacactggcatggattgacccattgtacagagaacaaccagacaaatgaaaatgatatcaaatct 110  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  37251314 gctatgataccattgttgggccttacgagggagccaacactggcatggattgacccattgcacagagaacaaccagacaaatgagaatgatatcaaatct 37251413  T
Q  111 ttaattactattttaaatatcacgaaattctagcccgtgcttggcacgggtttccaagctagt 173  Q
    ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37251414 ttacttaatattttaaatatcacgaaattctagcccgtgcttggcacgggtttccaagctagt 37251476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 11 - 174
Target Start/End: Original strand, 16250188 - 16250351
Alignment:
Q  11 gctatgataccattgttgggccttacgagggaaccaacactggcatggattgacccattgtacagagaacaaccagacaaatgaaaatgatatcaaatct 110  Q
    ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  16250188 gctatgatatcattgttgggccttacgagggagccaacactggcatggattgacccattgcacatagaacaaccagacaaatgaaaatgatatcaaatct 16250287  T
Q  111 ttaattactattttaaatatcacgaaattctagcccgtgcttggcacgggtttccaagctagtt 174  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  16250288 ttaattaatattttaaatatcaagaaattctagcccgtgcttggcacgggtttccaagctagtt 16250351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 11 - 163
Target Start/End: Original strand, 30369891 - 30370043
Alignment:
Q  11 gctatgataccattgttgggccttacgagggaaccaacactggcatggattgacccattgtacagagaacaaccagacaaatgaaaatgatatcaaatct 110  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  30369891 gctatgataccattgttgggccttacgagggagccaacactggcatggattgacccattgcacagagaacaaccagacaaatgagaatgatatcaaatct 30369990  T
Q  111 ttaattactattttaaatatcacgaaattctagcccgtgcttggcacgggttt 163  Q
    ||| ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  30369991 ttacttaatattttaaatatcacgaaattctagcccgtgcttggcacgggttt 30370043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 11 - 174
Target Start/End: Complemental strand, 23525161 - 23524998
Alignment:
Q  11 gctatgataccattgttgggccttacgagggaaccaacactggcatggattgacccattgtacagagaacaaccagacaaatgaaaatgatatcaaatct 110  Q
    ||||||||||| ||||||||||||||||| || |||||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||    
T  23525161 gctatgataccgttgttgggccttacgagagagccaacactagcatggattgacccattgcacagagaacaaccaaacaaatgaaaatgatatcaaatct 23525062  T
Q  111 ttaattactattttaaatatcacgaaattctagcccgtgcttggcacgggtttccaagctagtt 174  Q
    ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  23525061 ttaattaatattttaaatatcacgaaattctaacccgtgcttggcacgggtttccaagctagtt 23524998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 11 - 174
Target Start/End: Complemental strand, 34800753 - 34800586
Alignment:
Q  11 gctatgataccattgttgggccttacgagggaaccaacactggcatggattgacccattgtacagagaacaaccagacaaatgaaaatgatatcaaatct 110  Q
    |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |    
T  34800753 gctatgataccattgttgggccttacgagggagccaacactgacatggattgacccattgcacagagaacaaccagacaaatgaaaatgatatcaaatat 34800654  T
Q  111 ttaattactattttaaatatcacgaaattctagcccgtgcttg----gcacgggtttccaagctagtt 174  Q
    ||||||| |||||||||||||||||||||||| ||||||||||    |||||||||||||| ||||||    
T  34800653 ttaattaatattttaaatatcacgaaattctaacccgtgcttggcaagcacgggtttccaaactagtt 34800586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 11 - 112
Target Start/End: Original strand, 16313398 - 16313499
Alignment:
Q  11 gctatgataccattgttgggccttacgagggaaccaacactggcatggattgacccattgtacagagaacaaccagacaaatgaaaatgatatcaaatct 110  Q
    ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||    
T  16313398 gctatgatatcattgttgggccttacgagggagccaacactggcatggattgacccattgcacagagaacaactagacaaatgataatgatatcaaatct 16313497  T
Q  111 tt 112  Q
    ||    
T  16313498 tt 16313499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 227 - 349
Target Start/End: Original strand, 5528723 - 5528841
Alignment:
Q  227 actactacaataatgacatttaataatacttgaaaattgtaactaactaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgtta 326  Q
    |||||||||||||||||||||| ||| ||||||||||||||||    |||||||||||||||||| |||||||||||||| ||||||  |||||||||||    
T  5528723 actactacaataatgacatttagtaacacttgaaaattgtaac----taaatcaagaaaaatgttactaattaaatttagcaacactcaaacaattgtta 5528818  T
Q  327 ggtaaaatctgtgctactaaaga 349  Q
    | |||| |||||| |||||||||    
T  5528819 gataaagtctgtgttactaaaga 5528841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 227 - 333
Target Start/End: Original strand, 25638787 - 25638889
Alignment:
Q  227 actactacaataatgacatttaataatacttgaaaattgtaactaactaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgtta 326  Q
    ||||||||||||||| || ||| ||| ||||||||||||||||    |||||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  25638787 actactacaataatggcaattagtaacacttgaaaattgtaac----taaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgtta 25638882  T
Q  327 ggtaaaa 333  Q
    |||||||    
T  25638883 ggtaaaa 25638889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 227 - 332
Target Start/End: Complemental strand, 28249195 - 28249094
Alignment:
Q  227 actactacaataatgacatttaataatacttgaaaattgtaactaactaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgtta 326  Q
    ||||||||||||||| || ||| ||| |||||||||||||||||||    ||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  28249195 actactacaataatggcacttagtaacacttgaaaattgtaactaa----atcaagaaaaatgttactaattaaatttagcaacacttgaacaattgtta 28249100  T
Q  327 ggtaaa 332  Q
    ||||||    
T  28249099 ggtaaa 28249094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 227 - 351
Target Start/End: Original strand, 25637624 - 25637744
Alignment:
Q  227 actactacaataatgacatttaataatacttgaaaattgtaactaactaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgtta 326  Q
    |||||||||||||||||||||| ||| |||||||||||||||||||    || ||||||| |||| |||||||||||||| |||||| ||||||||||||    
T  25637624 actactacaataatgacatttagtaacacttgaaaattgtaactaa----attaagaaaactgttactaattaaatttagcaacactcgaacaattgtta 25637719  T
Q  327 ggtaaaatctgtgctactaaagaat 351  Q
    ||||||  | ||| |||||||||||    
T  25637720 ggtaaagcccgtgttactaaagaat 25637744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 231 - 350
Target Start/End: Complemental strand, 17634587 - 17634472
Alignment:
Q  231 ctacaataatgacatttaataatacttgaaaattgtaactaactaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgttaggta 330  Q
    |||||||||||||||||| ||| | |||||||||||||||||    ||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||    
T  17634587 ctacaataatgacatttagtaacatttgaaaattgtaactaa----atcaagaaaaatgttactaattaaatttaataacacttgaacaattgataggta 17634492  T
Q  331 aaatctgtgctactaaagaa 350  Q
    ||  | ||| ||||||||||    
T  17634491 aagcccgtgttactaaagaa 17634472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 227 - 349
Target Start/End: Complemental strand, 19370030 - 19369912
Alignment:
Q  227 actactacaataatgacatttaataatacttgaaaattgtaactaactaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgtta 326  Q
    ||||||||||||||||||||||  || |||||||||||||||||||    ||||||||||||||| |||||||||||| | |||||| ||||||||||||    
T  19370030 actactacaataatgacatttagcaacacttgaaaattgtaactaa----atcaagaaaaatgttactaattaaattttgcaacactcgaacaattgtta 19369935  T
Q  327 ggtaaaatctgtgctactaaaga 349  Q
    | |||| || ||| |||||||||    
T  19369934 gataaagtccgtgttactaaaga 19369912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 227 - 349
Target Start/End: Original strand, 19448428 - 19448546
Alignment:
Q  227 actactacaataatgacatttaataatacttgaaaattgtaactaactaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgtta 326  Q
    ||||||||||||||||||||||  || ||||||||||||||||    |||||||||||||||||| |||||||||||| | |||||| ||||||||||||    
T  19448428 actactacaataatgacatttagcaacacttgaaaattgtaac----taaatcaagaaaaatgttactaattaaattttgcaacactcgaacaattgtta 19448523  T
Q  327 ggtaaaatctgtgctactaaaga 349  Q
    | |||| || ||| |||||||||    
T  19448524 gataaagtccgtgttactaaaga 19448546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 227 - 349
Target Start/End: Complemental strand, 19532648 - 19532530
Alignment:
Q  227 actactacaataatgacatttaataatacttgaaaattgtaactaactaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgtta 326  Q
    ||||||||||||||||||||||  || |||||||||||||||||||    ||||||||||||||| |||||||||||| | |||||| ||||||||||||    
T  19532648 actactacaataatgacatttagcaacacttgaaaattgtaactaa----atcaagaaaaatgttactaattaaattttgcaacactcgaacaattgtta 19532553  T
Q  327 ggtaaaatctgtgctactaaaga 349  Q
    | |||| || ||| |||||||||    
T  19532552 gataaagtccgtgttactaaaga 19532530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 227 - 332
Target Start/End: Complemental strand, 45356232 - 45356131
Alignment:
Q  227 actactacaataatgacatttaataatacttgaaaattgtaactaactaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgtta 326  Q
    ||||||||||||||| || ||  ||| |||||||||||||||||||    ||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  45356232 actactacaataatggcaattggtaacacttgaaaattgtaactaa----atcaagaaaaatgttactaattaaatttagcaacacttgaacaattgtta 45356137  T
Q  327 ggtaaa 332  Q
    ||||||    
T  45356136 ggtaaa 45356131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 227 - 349
Target Start/End: Original strand, 18766897 - 18767015
Alignment:
Q  227 actactacaataatgacatttaataatacttgaaaattgtaactaactaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgtta 326  Q
    ||||||||||||||||||||||  || ||||||||||||||||    ||||||||||||||| ||  ||||||||||| | ||||||  |||||||||||    
T  18766897 actactacaataatgacatttagcaacacttgaaaattgtaac----taaatcaagaaaaatattattaattaaattttgcaacactcaaacaattgtta 18766992  T
Q  327 ggtaaaatctgtgctactaaaga 349  Q
    |||||| |  ||| |||||||||    
T  18766993 ggtaaagtacgtgttactaaaga 18767015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 272 - 332
Target Start/End: Complemental strand, 6801909 - 6801849
Alignment:
Q  272 actaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgttaggtaaa 332  Q
    |||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  6801909 actaaatcaataaaaatgttactaattaaatttagtaacagttgaacaattgttaggtaaa 6801849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 270 - 332
Target Start/End: Original strand, 6403612 - 6403674
Alignment:
Q  270 taactaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgttaggtaaa 332  Q
    ||||||||| |||||||||||| ||||||||||||||||||| |||| |||||||||||||||    
T  6403612 taactaaattaagaaaaatgttactaattaaatttagtaacatttgagcaattgttaggtaaa 6403674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 270 - 332
Target Start/End: Original strand, 29345450 - 29345512
Alignment:
Q  270 taactaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgttaggtaaa 332  Q
    ||||||||||||||||||| || ||||||||||||||||||  ||||||||||||||||||||    
T  29345450 taactaaatcaagaaaaatattactaattaaatttagtaacctttgaacaattgttaggtaaa 29345512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 272 - 333
Target Start/End: Complemental strand, 5651024 - 5650963
Alignment:
Q  272 actaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgttaggtaaaa 333  Q
    |||||||||||||||||||| |||||| ||||||| |||| |||||||||||||||||||||    
T  5651024 actaaatcaagaaaaatgttactaattcaatttagcaacatttgaacaattgttaggtaaaa 5650963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 119 - 166
Target Start/End: Original strand, 16313860 - 16313907
Alignment:
Q  119 tattttaaatatcacgaaattctagcccgtgcttggcacgggtttcca 166  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||    
T  16313860 tattttaaatatcacgaaattctagcccgtgcttagcacgggtttcca 16313907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 270 - 346
Target Start/End: Original strand, 31347368 - 31347444
Alignment:
Q  270 taactaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgttaggtaaaatctgtgctactaa 346  Q
    |||| ||||||||||||||| | ||||||||||||||||||| |||| |||||||||| ||||  ||||| ||||||    
T  31347368 taaccaaatcaagaaaaatgctactaattaaatttagtaacatttgatcaattgttagataaatcctgtgttactaa 31347444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 136 - 174
Target Start/End: Original strand, 8362217 - 8362255
Alignment:
Q  136 aattctagcccgtgcttggcacgggtttccaagctagtt 174  Q
    |||||||||||||||||||||||||||||||||||||||    
T  8362217 aattctagcccgtgcttggcacgggtttccaagctagtt 8362255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 136 - 174
Target Start/End: Complemental strand, 17884724 - 17884686
Alignment:
Q  136 aattctagcccgtgcttggcacgggtttccaagctagtt 174  Q
    |||||||||||||||||||||||||||||||||||||||    
T  17884724 aattctagcccgtgcttggcacgggtttccaagctagtt 17884686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 270 - 332
Target Start/End: Original strand, 29553648 - 29553710
Alignment:
Q  270 taactaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgttaggtaaa 332  Q
    |||| ||||||||||||||||| |||||||||||||| |||| |||| |||||||||| ||||    
T  29553648 taaccaaatcaagaaaaatgttactaattaaatttagcaacatttgagcaattgttagttaaa 29553710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 175
Target Start/End: Original strand, 4932142 - 4932179
Alignment:
Q  138 ttctagcccgtgcttggcacgggtttccaagctagttg 175  Q
    ||||||||||||||||||||||||||||||||||||||    
T  4932142 ttctagcccgtgcttggcacgggtttccaagctagttg 4932179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 349
Target Start/End: Original strand, 5000711 - 5000777
Alignment:
Q  283 aaaaatgttgctaattaaatttagtaacacttgaacaattgttaggtaaaatctgtgctactaaaga 349  Q
    |||| |||| ||||||||||||||||||| |||| |||| ||||||| ||| ||||| |||||||||    
T  5000711 aaaattgttactaattaaatttagtaacatttgagcaatagttaggtgaaacctgtgttactaaaga 5000777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 174
Target Start/End: Original strand, 15278120 - 15278162
Alignment:
Q  132 acgaaattctagcccgtgcttggcacgggtttccaagctagtt 174  Q
    ||||||||||||||||||||||||||| ||||||| |||||||    
T  15278120 acgaaattctagcccgtgcttggcacgagtttccatgctagtt 15278162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 174
Target Start/End: Original strand, 15458489 - 15458531
Alignment:
Q  132 acgaaattctagcccgtgcttggcacgggtttccaagctagtt 174  Q
    ||||||||||||||||||||||||||| ||||||| |||||||    
T  15458489 acgaaattctagcccgtgcttggcacgagtttccatgctagtt 15458531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 175
Target Start/End: Original strand, 21589316 - 21589358
Alignment:
Q  133 cgaaattctagcccgtgcttggcacgggtttccaagctagttg 175  Q
    ||||||||||||||||||||||||||||| ||||| |||||||    
T  21589316 cgaaattctagcccgtgcttggcacgggtgtccaaactagttg 21589358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 174
Target Start/End: Original strand, 22997423 - 22997461
Alignment:
Q  136 aattctagcccgtgcttggcacgggtttccaagctagtt 174  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  22997423 aattcaagcccgtgcttggcacgggtttccaagctagtt 22997461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 174
Target Start/End: Original strand, 23142182 - 23142224
Alignment:
Q  132 acgaaattctagcccgtgcttggcacgggtttccaagctagtt 174  Q
    |||||||||||||||||||||||||||||| |||| |||||||    
T  23142182 acgaaattctagcccgtgcttggcacgggtgtccatgctagtt 23142224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 123 - 174
Target Start/End: Complemental strand, 357322 - 357271
Alignment:
Q  123 ttaaatatcacgaaattctagcccgtgcttggcacgggtttccaagctagtt 174  Q
    |||||| | |||||| ||||||||||||||||||| |||||||| |||||||    
T  357322 ttaaatttgacgaaagtctagcccgtgcttggcacaggtttccatgctagtt 357271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 174
Target Start/End: Complemental strand, 15630226 - 15630188
Alignment:
Q  136 aattctagcccgtgcttggcacgggtttccaagctagtt 174  Q
    ||||||||| ||||||||||||||||||||| |||||||    
T  15630226 aattctagcacgtgcttggcacgggtttccatgctagtt 15630188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 166
Target Start/End: Original strand, 41529082 - 41529116
Alignment:
Q  132 acgaaattctagcccgtgcttggcacgggtttcca 166  Q
    |||||||||||||||||||||||||||||| ||||    
T  41529082 acgaaattctagcccgtgcttggcacgggtgtcca 41529116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 174
Target Start/End: Original strand, 43217951 - 43217989
Alignment:
Q  136 aattctagcccgtgcttggcacgggtttccaagctagtt 174  Q
    ||||||||| ||||||||||||||||||||| |||||||    
T  43217951 aattctagctcgtgcttggcacgggtttccatgctagtt 43217989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 173
Target Start/End: Complemental strand, 13756244 - 13756203
Alignment:
Q  132 acgaaattctagcccgtgcttggcacgggtttccaagctagt 173  Q
    |||||||| ||||||||||||||||||||| |||| ||||||    
T  13756244 acgaaattttagcccgtgcttggcacgggtgtccatgctagt 13756203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 333
Target Start/End: Original strand, 14997642 - 14997703
Alignment:
Q  272 actaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgttaggtaaaa 333  Q
    ||||| |||||||||||||| ||  ||||| ||||||||| ||| | |||||||||||||||    
T  14997642 actaattcaagaaaaatgttactggttaaaattagtaacatttgtagaattgttaggtaaaa 14997703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 135; Significance: 3e-70; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 12 - 174
Target Start/End: Original strand, 31174 - 31336
Alignment:
Q  12 ctatgataccattgttgggccttacgagggaaccaacactggcatggattgacccattgtacagagaacaaccagacaaatgaaaatgatatcaaatctt 111  Q
    ||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||    
T  31174 ctatgataccattcttgggccttatgagggagccaacactggcatggattgacccattgcacagagaacatccagacaaatgaaaatgatatcaaatctt 31273  T
Q  112 taattactattttaaatatcacgaaattctagcccgtgcttggcacgggtttccaagctagtt 174  Q
    |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  31274 taattaatattttaaatatcacgaaattctagcccgtgtttggcacgggtttccaagctagtt 31336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0268 (Bit Score: 132; Significance: 2e-68; HSPs: 1)
Name: scaffold0268
Description:

Target: scaffold0268; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 11 - 174
Target Start/End: Original strand, 20012 - 20175
Alignment:
Q  11 gctatgataccattgttgggccttacgagggaaccaacactggcatggattgacccattgtacagagaacaaccagacaaatgaaaatgatatcaaatct 110  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||| |||||||||||||||||||| || |||||||||||||||    
T  20012 gctatgataccattgttgggccttacgaaggagccaacactggcatgggttgacccattgcacagagaacaaccagacaaaagagaatgatatcaaatct 20111  T
Q  111 ttaattactattttaaatatcacgaaattctagcccgtgcttggcacgggtttccaagctagtt 174  Q
    ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20112 ttacttaatattttaaatatcacgaaattctagcccgtgcttggcacgggtttccaagctagtt 20175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 129; Significance: 1e-66; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 11 - 163
Target Start/End: Original strand, 26290147 - 26290299
Alignment:
Q  11 gctatgataccattgttgggccttacgagggaaccaacactggcatggattgacccattgtacagagaacaaccagacaaatgaaaatgatatcaaatct 110  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||||||    
T  26290147 gctatgataccattgttgggccttacgagggagccaacactggcatggattgatccattgcacagagaacaaccagacaaatgagaatgatatcaaatct 26290246  T
Q  111 ttaattactattttaaatatcacgaaattctagcccgtgcttggcacgggttt 163  Q
    ||| ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  26290247 ttacttaatattttaaatatcacgaaattctagcccgtgcttggcacgggttt 26290299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 11 - 163
Target Start/End: Complemental strand, 55049967 - 55049815
Alignment:
Q  11 gctatgataccattgttgggccttacgagggaaccaacactggcatggattgacccattgtacagagaacaaccagacaaatgaaaatgatatcaaatct 110  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  55049967 gctatgataccattgttgggccttacgagggagccaacactggcatggattgacccattgcacagagaacaaccagacaaatgagaatgatatcaaatct 55049868  T
Q  111 ttaattactattttaaatatcacgaaattctagcccgtgcttggcacgggttt 163  Q
    ||| ||| |||||||||||||| ||||||||||||| | |||| |||| ||||    
T  55049867 ttacttaatattttaaatatcatgaaattctagcccatacttgacacgagttt 55049815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 227 - 332
Target Start/End: Complemental strand, 47066154 - 47066053
Alignment:
Q  227 actactacaataatgacatttaataatacttgaaaattgtaactaactaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgtta 326  Q
    |||||||||||||||||||||| ||| |||||||||||||||||||    |||||||||||||||  ||||||||||||||||||| |||||||||||||    
T  47066154 actactacaataatgacatttagtaacacttgaaaattgtaactaa----atcaagaaaaatgttagtaattaaatttagtaacacctgaacaattgtta 47066059  T
Q  327 ggtaaa 332  Q
    ||||||    
T  47066058 ggtaaa 47066053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 227 - 332
Target Start/End: Original strand, 53300331 - 53300432
Alignment:
Q  227 actactacaataatgacatttaataatacttgaaaattgtaactaactaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgtta 326  Q
    |||||||||||||||||||||| ||| ||||||||||||||| |||    |||||||||||||||  ||||||||||||||||||| | |||||||||||    
T  53300331 actactacaataatgacatttagtaacacttgaaaattgtaattaa----atcaagaaaaatgttagtaattaaatttagtaacacctaaacaattgtta 53300426  T
Q  327 ggtaaa 332  Q
    ||||||    
T  53300427 ggtaaa 53300432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 227 - 349
Target Start/End: Complemental strand, 1685072 - 1684954
Alignment:
Q  227 actactacaataatgacatttaataatacttgaaaattgtaactaactaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgtta 326  Q
    ||||||| ||||||||||||||  || |||||||||||||||||||    ||||||||||||||| |||||||||||| | |||||| ||||||||||||    
T  1685072 actactataataatgacatttagcaacacttgaaaattgtaactaa----atcaagaaaaatgttactaattaaattttgcaacactcgaacaattgtta 1684977  T
Q  327 ggtaaaatctgtgctactaaaga 349  Q
    | |||| || ||| |||||||||    
T  1684976 gataaagtccgtgttactaaaga 1684954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 227 - 332
Target Start/End: Original strand, 43600247 - 43600348
Alignment:
Q  227 actactacaataatgacatttaataatacttgaaaattgtaactaactaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgtta 326  Q
    ||||||||||||||| || ||  ||| ||||||||||||||||    |||||||||||||||||| |||||||||||||| || ||||||||||||||||    
T  43600247 actactacaataatggcaattggtaacacttgaaaattgtaac----taaatcaagaaaaatgttactaattaaatttagcaaaacttgaacaattgtta 43600342  T
Q  327 ggtaaa 332  Q
    ||||||    
T  43600343 ggtaaa 43600348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 227 - 349
Target Start/End: Original strand, 1152024 - 1152142
Alignment:
Q  227 actactacaataatgacatttaataatacttgaaaattgtaactaactaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgtta 326  Q
    ||||||||||||||||||||||  || |||||||||||||||||||    || |||||||||||| |||||||||||| | ||||||  |||||||||||    
T  1152024 actactacaataatgacatttagcaacacttgaaaattgtaactaa----attaagaaaaatgttactaattaaattttgcaacactcaaacaattgtta 1152119  T
Q  327 ggtaaaatctgtgctactaaaga 349  Q
    | |||| || ||| |||||||||    
T  1152120 gataaagtccgtgttactaaaga 1152142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 270 - 351
Target Start/End: Complemental strand, 24559076 - 24558995
Alignment:
Q  270 taactaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgttaggtaaaatctgtgctactaaagaat 351  Q
    |||||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||   ||||| |||||||||||    
T  24559076 taactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacgattgttaggtaacggctgtgttactaaagaat 24558995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 272 - 329
Target Start/End: Original strand, 48464061 - 48464118
Alignment:
Q  272 actaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgttaggt 329  Q
    ||||||| || ||||||||| ||||||||||||||||||| |||||||||||||||||    
T  48464061 actaaataaataaaaatgttactaattaaatttagtaacatttgaacaattgttaggt 48464118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 272 - 348
Target Start/End: Complemental strand, 4881148 - 4881072
Alignment:
Q  272 actaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgttaggtaaaatctgtgctactaaag 348  Q
    |||||||||||||||||||| || |||||||||||||| | ||| | |||||||||||||| || ||| ||||||||    
T  4881148 actaaatcaagaaaaatgttactgattaaatttagtaatatttgtataattgttaggtaaagtccgtgttactaaag 4881072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 272 - 332
Target Start/End: Complemental strand, 4904219 - 4904159
Alignment:
Q  272 actaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgttaggtaaa 332  Q
    ||||||||| |||||||||| || |||||||||||||||| ||| ||||||||||||||||    
T  4904219 actaaatcatgaaaaatgttactgattaaatttagtaacatttgtacaattgttaggtaaa 4904159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 136 - 174
Target Start/End: Complemental strand, 14248938 - 14248900
Alignment:
Q  136 aattctagcccgtgcttggcacgggtttccaagctagtt 174  Q
    |||||||||||||||||||||||||||||||||||||||    
T  14248938 aattctagcccgtgcttggcacgggtttccaagctagtt 14248900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 270 - 327
Target Start/End: Complemental strand, 21539352 - 21539295
Alignment:
Q  270 taactaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgttag 327  Q
    ||||||||||||| |||||||| || |||||||||||||||| || ||||||||||||    
T  21539352 taactaaatcaaggaaaatgttactgattaaatttagtaacatttaaacaattgttag 21539295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 11 - 159
Target Start/End: Complemental strand, 11793218 - 11793071
Alignment:
Q  11 gctatgataccattgttgggccttacgagggaaccaacactggcatggattgacccattgtacagagaacaaccagacaaatgaaaatgatatcaaatct 110  Q
    ||||||||||||||||| | ||||| |||||| ||| ||||||  |||||  ||||||   | |||||  ||| |||||||||| ||||||| || ||||    
T  11793218 gctatgataccattgttagaccttatgagggagccatcactggtgtggatcaacccatgaaatagagaggaactagacaaatgacaatgataccacatct 11793119  T
Q  111 ttaattactattttaaatatcacgaaattctagcccgtgcttggcacgg 159  Q
    ||| ||| | |||||| ||||||||||||||| |  |||||||| ||||    
T  11793118 ttacttaat-ttttaagtatcacgaaattctaacatgtgcttggtacgg 11793071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 138 - 174
Target Start/End: Complemental strand, 13914910 - 13914874
Alignment:
Q  138 ttctagcccgtgcttggcacgggtttccaagctagtt 174  Q
    |||||||||||||||||||||||||||||||||||||    
T  13914910 ttctagcccgtgcttggcacgggtttccaagctagtt 13914874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 174
Target Start/End: Original strand, 42616670 - 42616708
Alignment:
Q  136 aattctagcccgtgcttggcacgggtttccaagctagtt 174  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  42616670 aattctagcccgtacttggcacgggtttccaagctagtt 42616708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 174
Target Start/End: Complemental strand, 50814497 - 50814455
Alignment:
Q  132 acgaaattctagcccgtgcttggcacgggtttccaagctagtt 174  Q
    |||||||||||||||||||||||||||||| |||| |||||||    
T  50814497 acgaaattctagcccgtgcttggcacgggtgtccatgctagtt 50814455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 167
Target Start/End: Complemental strand, 281547 - 281503
Alignment:
Q  123 ttaaatatcacgaaattctagcccgtgcttggcacgggtttccaa 167  Q
    |||||||| |||||||||||||||||||||| ||||||| |||||    
T  281547 ttaaatatgacgaaattctagcccgtgcttgacacgggtgtccaa 281503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 166
Target Start/End: Complemental strand, 13228394 - 13228360
Alignment:
Q  132 acgaaattctagcccgtgcttggcacgggtttcca 166  Q
    |||||||||||||||||||||||||||||| ||||    
T  13228394 acgaaattctagcccgtgcttggcacgggtgtcca 13228360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 174
Target Start/End: Original strand, 24183808 - 24183846
Alignment:
Q  136 aattctagcccgtgcttggcacgggtttccaagctagtt 174  Q
    |||||||||||||||||||||||||| |||| |||||||    
T  24183808 aattctagcccgtgcttggcacgggtgtccatgctagtt 24183846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 175
Target Start/End: Original strand, 42757967 - 42758009
Alignment:
Q  133 cgaaattctagcccgtgcttggcacgggtttccaagctagttg 175  Q
    ||||||||||||||||||||||||||||| ||||  |||||||    
T  42757967 cgaaattctagcccgtgcttggcacgggtgtccatactagttg 42758009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 347
Target Start/End: Original strand, 21317485 - 21317534
Alignment:
Q  298 taaatttagtaacacttgaacaattgttaggtaaaatctgtgctactaaa 347  Q
    |||||||||||||| || |||||||||||||||||  ||||| |||||||    
T  21317485 taaatttagtaacatttcaacaattgttaggtaaaggctgtgttactaaa 21317534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 276 - 332
Target Start/End: Complemental strand, 18941733 - 18941677
Alignment:
Q  276 aatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgttaggtaaa 332  Q
    ||||| |||||||||||||||||| ||  | ||||| |||||||||||||| |||||    
T  18941733 aatcacgaaaaatgttgctaattatatccaataacatttgaacaattgttaagtaaa 18941677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 161
Target Start/End: Complemental strand, 39974449 - 39974421
Alignment:
Q  133 cgaaattctagcccgtgcttggcacgggt 161  Q
    |||||||||||||||||||||||||||||    
T  39974449 cgaaattctagcccgtgcttggcacgggt 39974421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 11 - 173
Target Start/End: Complemental strand, 40517 - 40355
Alignment:
Q  11 gctatgataccattgttgggccttacgagggaaccaacactggcatggattgacccattgtacagagaacaaccagacaaatgaaaatgatatcaaatct 110  Q
    ||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||    
T  40517 gctatgatatcattgttaggccttacgagggagccaacactggcatggattgacccattgcacagagaacaaccagacaaataagaatgatatcaaatct 40418  T
Q  111 ttaattactattttaaatatcacgaaattctagcccgtgcttggcacgggtttccaagctagt 173  Q
    ||| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  40417 ttacttaatattttaaatatcacgaaattctagcccgtgcttggcacgggtttctaagctagt 40355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 127; Significance: 2e-65; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 11 - 173
Target Start/End: Original strand, 19817554 - 19817716
Alignment:
Q  11 gctatgataccattgttgggccttacgagggaaccaacactggcatggattgacccattgtacagagaacaaccagacaaatgaaaatgatatcaaatct 110  Q
    |||||||||||||||||||| | ||||||||| ||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  19817554 gctatgataccattgttgggtcgtacgagggagccaacactggcatagattaacccattgcacagagaacaaccagacaaatgaaaatgatatcaaatct 19817653  T
Q  111 ttaattactattttaaatatcacgaaattctagcccgtgcttggcacgggtttccaagctagt 173  Q
    ||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||    
T  19817654 ttaattaatattttaaacatcacgaaattctaacccgtgcttggcacgggtttccaagctagt 19817716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 227 - 348
Target Start/End: Original strand, 2550146 - 2550263
Alignment:
Q  227 actactacaataatgacatttaataatacttgaaaattgtaactaactaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgtta 326  Q
    ||||||||||||||| || ||  ||| ||||||||||||||||    |||||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  2550146 actactacaataatggcaattggtaacacttgaaaattgtaac----taaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgtta 2550241  T
Q  327 ggtaaaatctgtgctactaaag 348  Q
    ||||||  ||||| ||||||||    
T  2550242 ggtaaagcctgtgttactaaag 2550263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 231 - 332
Target Start/End: Original strand, 13845976 - 13846073
Alignment:
Q  231 ctacaataatgacatttaataatacttgaaaattgtaactaactaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgttaggta 330  Q
    ||||||||||||||||||  || ||||||||||||||||    |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  13845976 ctacaataatgacatttagcaacacttgaaaattgtaac----taaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggta 13846071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 235 - 349
Target Start/End: Complemental strand, 1628059 - 1627949
Alignment:
Q  235 aataatgacatttaataatacttgaaaattgtaactaactaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgttaggtaaaat 334  Q
    |||||||||||||| ||| |||||||||||||||||||    |||||||||||| || |||||||||||||||||||||||||||||||||| ||||| |    
T  1628059 aataatgacatttagtaacacttgaaaattgtaactaa----atcaagaaaaatattactaattaaatttagtaacacttgaacaattgttaagtaaagt 1627964  T
Q  335 ctgtgctactaaaga 349  Q
    | ||| ||| |||||    
T  1627963 ccgtgttacaaaaga 1627949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 227 - 332
Target Start/End: Complemental strand, 7407874 - 7407773
Alignment:
Q  227 actactacaataatgacatttaataatacttgaaaattgtaactaactaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgtta 326  Q
    ||||||||||||||| || ||| ||| |||||||||||||||||||    |||||||||||| || |||||||||||||| |||||||||||||||||||    
T  7407874 actactacaataatggcaattagtaacacttgaaaattgtaactaa----atcaagaaaaatattactaattaaatttagcaacacttgaacaattgtta 7407779  T
Q  327 ggtaaa 332  Q
    ||||||    
T  7407778 ggtaaa 7407773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 272 - 349
Target Start/End: Original strand, 26707880 - 26707957
Alignment:
Q  272 actaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgttaggtaaaatctgtgctactaaaga 349  Q
    |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||| || |||||||||    
T  26707880 actaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtctctgttactaaaga 26707957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 227 - 332
Target Start/End: Original strand, 1654556 - 1654657
Alignment:
Q  227 actactacaataatgacatttaataatacttgaaaattgtaactaactaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgtta 326  Q
    ||||||||||||||| || ||| ||| | ||||||||||||||    |||||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  1654556 actactacaataatggcaattagtaacaattgaaaattgtaac----taaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgtta 1654651  T
Q  327 ggtaaa 332  Q
     |||||    
T  1654652 agtaaa 1654657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 270 - 349
Target Start/End: Original strand, 5498497 - 5498576
Alignment:
Q  270 taactaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgttaggtaaaatctgtgctactaaaga 349  Q
    |||||||||||||||||||||| ||||||||||||||||||   |||||||||||||||||||| || || |||||||||    
T  5498497 taactaaatcaagaaaaatgttactaattaaatttagtaacttctgaacaattgttaggtaaaacctatgttactaaaga 5498576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 270 - 332
Target Start/End: Complemental strand, 16457412 - 16457350
Alignment:
Q  270 taactaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgttaggtaaa 332  Q
    |||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||||||    
T  16457412 taactaaatcaagaaaaatgttactaattaaatttagtaacatttgagcaattgttaggtaaa 16457350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 274 - 329
Target Start/End: Complemental strand, 2943291 - 2943236
Alignment:
Q  274 taaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgttaggt 329  Q
    |||||||||||||||||| ||||||||||||||||||| | |||||||||||||||    
T  2943291 taaatcaagaaaaatgttactaattaaatttagtaacattcgaacaattgttaggt 2943236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 270 - 332
Target Start/End: Complemental strand, 1613294 - 1613232
Alignment:
Q  270 taactaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgttaggtaaa 332  Q
    |||||||||||||||||||||| |||| |||||||||||||| |||| ||||| |||||||||    
T  1613294 taactaaatcaagaaaaatgttactaaataaatttagtaacagttgaccaatttttaggtaaa 1613232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 272 - 332
Target Start/End: Original strand, 36035310 - 36035370
Alignment:
Q  272 actaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgttaggtaaa 332  Q
    |||||||||||||||||  | ||||||||||||||||||| ||| ||||||||||||||||    
T  36035310 actaaatcaagaaaaataatactaattaaatttagtaacaattgtacaattgttaggtaaa 36035370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 272 - 322
Target Start/End: Complemental strand, 27259524 - 27259474
Alignment:
Q  272 actaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaatt 322  Q
    ||||||||||| |||||||| ||||||||||||||||||| ||||||||||    
T  27259524 actaaatcaagcaaaatgttactaattaaatttagtaacatttgaacaatt 27259474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 132 - 174
Target Start/End: Original strand, 34854631 - 34854673
Alignment:
Q  132 acgaaattctagcccgtgcttggcacgggtttccaagctagtt 174  Q
    ||||||||||||| |||||||||||||||||||||||||||||    
T  34854631 acgaaattctagctcgtgcttggcacgggtttccaagctagtt 34854673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 136 - 174
Target Start/End: Original strand, 38358065 - 38358103
Alignment:
Q  136 aattctagcccgtgcttggcacgggtttccaagctagtt 174  Q
    |||||||||||||||||||||||||||||||||||||||    
T  38358065 aattctagcccgtgcttggcacgggtttccaagctagtt 38358103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 136 - 176
Target Start/End: Complemental strand, 6435616 - 6435576
Alignment:
Q  136 aattctagcccgtgcttggcacgggtttccaagctagttgg 176  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  6435616 aattctagcccgtgcttggcacgggtttccatgctagttgg 6435576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 272 - 332
Target Start/End: Complemental strand, 9633521 - 9633461
Alignment:
Q  272 actaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgttaggtaaa 332  Q
    |||||||| | ||||||||| ||||||||||||||| ||| || |||||||||||||||||    
T  9633521 actaaatcgaaaaaaatgttactaattaaatttagttacatttaaacaattgttaggtaaa 9633461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 138 - 173
Target Start/End: Complemental strand, 10019193 - 10019158
Alignment:
Q  138 ttctagcccgtgcttggcacgggtttccaagctagt 173  Q
    ||||||||||||||||||||||||||||||||||||    
T  10019193 ttctagcccgtgcttggcacgggtttccaagctagt 10019158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 298 - 349
Target Start/End: Original strand, 26735681 - 26735732
Alignment:
Q  298 taaatttagtaacacttgaacaattgttaggtaaaatctgtgctactaaaga 349  Q
    |||||||||||||| |||||||||||||||||||||||  || |||||||||    
T  26735681 taaatttagtaacatttgaacaattgttaggtaaaatccatgttactaaaga 26735732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 174
Target Start/End: Complemental strand, 9261168 - 9261130
Alignment:
Q  136 aattctagcccgtgcttggcacgggtttccaagctagtt 174  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  9261168 aattctagcccgtgcttggcacgggtttccatgctagtt 9261130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 275 - 333
Target Start/End: Original strand, 35083000 - 35083058
Alignment:
Q  275 aaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgttaggtaaaa 333  Q
    |||||||||||||||||  ||| |||||||||||| | ||||||||||||||| |||||    
T  35083000 aaatcaagaaaaatgttagtaaataaatttagtaatatttgaacaattgttagataaaa 35083058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 125 - 166
Target Start/End: Complemental strand, 17763878 - 17763837
Alignment:
Q  125 aaatatcacgaaattctagcccgtgcttggcacgggtttcca 166  Q
    |||||| |||||||||||||||||||||||||||||| ||||    
T  17763878 aaatatgacgaaattctagcccgtgcttggcacgggtgtcca 17763837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 125 - 166
Target Start/End: Complemental strand, 19065198 - 19065157
Alignment:
Q  125 aaatatcacgaaattctagcccgtgcttggcacgggtttcca 166  Q
    |||||| |||||||||||||||||||||||||||||| ||||    
T  19065198 aaatatgacgaaattctagcccgtgcttggcacgggtgtcca 19065157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 136 - 173
Target Start/End: Complemental strand, 20776163 - 20776126
Alignment:
Q  136 aattctagcccgtgcttggcacgggtttccaagctagt 173  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  20776163 aattctagcccatgcttggcacgggtttccaagctagt 20776126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 137 - 174
Target Start/End: Original strand, 32976794 - 32976831
Alignment:
Q  137 attctagcccgtgcttggcacgggtttccaagctagtt 174  Q
    |||||||||||||||||||||||||||||| |||||||    
T  32976794 attctagcccgtgcttggcacgggtttccatgctagtt 32976831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 132 - 177
Target Start/End: Original strand, 42400681 - 42400726
Alignment:
Q  132 acgaaattctagcccgtgcttggcacgggtttccaagctagttgga 177  Q
    |||| ||||||||||||||||||||||||| |||| ||||||||||    
T  42400681 acgacattctagcccgtgcttggcacgggtgtccatgctagttgga 42400726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 174
Target Start/End: Complemental strand, 35683514 - 35683478
Alignment:
Q  138 ttctagcccgtgcttggcacgggtttccaagctagtt 174  Q
    |||||||| ||||||||||||||||||||||||||||    
T  35683514 ttctagcctgtgcttggcacgggtttccaagctagtt 35683478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 123 - 174
Target Start/End: Complemental strand, 20788254 - 20788203
Alignment:
Q  123 ttaaatatcacgaaattctagcccgtgcttggcacgggtttccaagctagtt 174  Q
    |||||| | |||||| |||||||||||||||||||||||||| | |||||||    
T  20788254 ttaaatttgacgaaagtctagcccgtgcttggcacgggtttcaatgctagtt 20788203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 123 - 174
Target Start/End: Original strand, 30171452 - 30171503
Alignment:
Q  123 ttaaatatcacgaaattctagcccgtgcttggcacgggtttccaagctagtt 174  Q
    |||||| | |||||| |||| ||||| |||||||||||||||||||||||||    
T  30171452 ttaaatttgacgaaagtctaacccgtacttggcacgggtttccaagctagtt 30171503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 272 - 322
Target Start/End: Original strand, 36035040 - 36035090
Alignment:
Q  272 actaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaatt 322  Q
    |||||||||||||||||  | ||||||||||||||||||| ||| ||||||    
T  36035040 actaaatcaagaaaaataatactaattaaatttagtaacaattgtacaatt 36035090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 174
Target Start/End: Original strand, 37197730 - 37197768
Alignment:
Q  136 aattctagcccgtgcttggcacgggtttccaagctagtt 174  Q
    ||||||||||||||||||| |||||||||||| ||||||    
T  37197730 aattctagcccgtgcttggtacgggtttccaaactagtt 37197768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 166
Target Start/End: Complemental strand, 50239352 - 50239318
Alignment:
Q  132 acgaaattctagcccgtgcttggcacgggtttcca 166  Q
    |||||||||||||||||||||||||||||| ||||    
T  50239352 acgaaattctagcccgtgcttggcacgggtgtcca 50239318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 166
Target Start/End: Complemental strand, 55367892 - 55367862
Alignment:
Q  136 aattctagcccgtgcttggcacgggtttcca 166  Q
    |||||||||||||||||||||||||||||||    
T  55367892 aattctagcccgtgcttggcacgggtttcca 55367862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 179
Target Start/End: Original strand, 12746462 - 12746518
Alignment:
Q  123 ttaaatatcacgaaattctagcccgtgcttggcacgggtttccaagctagttggaaa 179  Q
    |||||||| | ||||||||||||| |||||| ||||||| ||||| |||||| ||||    
T  12746462 ttaaatatgatgaaattctagcccatgcttgacacgggtgtccaaactagtttgaaa 12746518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 347
Target Start/End: Complemental strand, 27713507 - 27713443
Alignment:
Q  283 aaaaatgttgctaattaaatttagtaacacttgaacaattgttaggtaaaatctgtgctactaaa 347  Q
    ||||| ||| ||||||||||||||||||| || || |||||||||| |||| || || |||||||    
T  27713507 aaaaaagttactaattaaatttagtaacatttaaataattgttaggcaaaacctatgttactaaa 27713443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 124; Significance: 1e-63; HSPs: 31)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 11 - 174
Target Start/End: Complemental strand, 20872406 - 20872243
Alignment:
Q  11 gctatgataccattgttgggccttacgagggaaccaacactggcatggattgacccattgtacagagaacaaccagacaaatgaaaatgatatcaaatct 110  Q
    ||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||| ||| ||||||||||||||||||| ||||||||||||| |    
T  20872406 gctatgataccattgttaggccttacgagggagccaacactggcatggattaacccattgcacaaagaacaaccagacaaatgagaatgatatcaaatat 20872307  T
Q  111 ttaattactattttaaatatcacgaaattctagcccgtgcttggcacgggtttccaagctagtt 174  Q
    ||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  20872306 ttacttaatattttaaatatcacgaaattctagcccgtgcttggcacgggtttctaagctagtt 20872243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 12 - 161
Target Start/End: Original strand, 9453023 - 9453172
Alignment:
Q  12 ctatgataccattgttgggccttacgagggaaccaacactggcatggattgacccattgtacagagaacaaccagacaaatgaaaatgatatcaaatctt 111  Q
    |||||| ||||| ||||||||||| |||| | |||||||||| ||| |||||||||||| | ||||| |||||| |||||||| || |||||||||||||    
T  9453023 ctatgacaccatcgttgggccttatgaggaagccaacactggtatgtattgacccattgcatagagagcaaccaaacaaatgagaacgatatcaaatctt 9453122  T
Q  112 taattactattttaaatatcacgaaattctagcccgtgcttggcacgggt 161  Q
    || ||| |||||||| ||||| ||||||||||| | | ||||||||||||    
T  9453123 tacttagtattttaagtatcatgaaattctagctcatacttggcacgggt 9453172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 98 - 173
Target Start/End: Original strand, 23410278 - 23410352
Alignment:
Q  98 tgatatcaaatctttaattactattttaaatatcacgaaattctagcccgtgcttggcacgggtttccaagctagt 173  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  23410278 tgatatcaaatctttaattaatattttaa-tatcacgaaattctagcccgtgcttggcacgggtttccaagctagt 23410352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 227 - 349
Target Start/End: Complemental strand, 14669466 - 14669348
Alignment:
Q  227 actactacaataatgacatttaataatacttgaaaattgtaactaactaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgtta 326  Q
    ||||||||||||||||||||||  || |||||||||||||||||||    ||||||||||||||| |||||||||||| | |||||| ||| ||||||||    
T  14669466 actactacaataatgacatttagcaacacttgaaaattgtaactaa----atcaagaaaaatgttactaattaaattttgcaacactcgaataattgtta 14669371  T
Q  327 ggtaaaatctgtgctactaaaga 349  Q
    |||||| || ||| |||||||||    
T  14669370 ggtaaagtccgtgttactaaaga 14669348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 227 - 332
Target Start/End: Complemental strand, 11936887 - 11936786
Alignment:
Q  227 actactacaataatgacatttaataatacttgaaaattgtaactaactaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgtta 326  Q
    ||||||||||||||| || ||| ||| |||||||||||||||||||    ||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  11936887 actactacaataatggcaattagtaacacttgaaaattgtaactaa----atcaagaaaaatgttactaattaaatttagcaacacttgaacaattgtta 11936792  T
Q  327 ggtaaa 332  Q
    | ||||    
T  11936791 gataaa 11936786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 227 - 332
Target Start/End: Original strand, 16734785 - 16734886
Alignment:
Q  227 actactacaataatgacatttaataatacttgaaaattgtaactaactaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgtta 326  Q
    ||||||||||||||| || ||| ||| ||||||||||||||||    |||||||||||||||||| |||||||||||||| |||| ||||||||||||||    
T  16734785 actactacaataatggcaattagtaacacttgaaaattgtaac----taaatcaagaaaaatgttactaattaaatttagcaacatttgaacaattgtta 16734880  T
Q  327 ggtaaa 332  Q
    ||||||    
T  16734881 ggtaaa 16734886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 234 - 349
Target Start/End: Original strand, 12591820 - 12591931
Alignment:
Q  234 caataatgacatttaataatacttgaaaattgtaactaactaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgttaggtaaaa 333  Q
    ||||||||||||||| ||| ||||||||||||||||    ||||||||||||||||||  ||||||||||||||||| || ||||||||||||||||||     
T  12591820 caataatgacatttagtaacacttgaaaattgtaac----taaatcaagaaaaatgttagtaattaaatttagtaacgctcgaacaattgttaggtaaag 12591915  T
Q  334 tctgtgctactaaaga 349  Q
     | ||| |||||||||    
T  12591916 cccgtgttactaaaga 12591931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 227 - 349
Target Start/End: Complemental strand, 17719843 - 17719725
Alignment:
Q  227 actactacaataatgacatttaataatacttgaaaattgtaactaactaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgtta 326  Q
    ||||||||||||||||||||||  || |||||||||||||||||||    ||||||||||||||| |||||||| ||| | |||||| ||||||||||||    
T  17719843 actactacaataatgacatttagcaacacttgaaaattgtaactaa----atcaagaaaaatgttactaattaatttttgcaacactcgaacaattgtta 17719748  T
Q  327 ggtaaaatctgtgctactaaaga 349  Q
    | |||| || ||| |||||||||    
T  17719747 gataaagtccgtgttactaaaga 17719725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 227 - 332
Target Start/End: Original strand, 15361695 - 15361796
Alignment:
Q  227 actactacaataatgacatttaataatacttgaaaattgtaactaactaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgtta 326  Q
    |||||||||||||||  | ||| ||| |||| |||||||||||    |||||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  15361695 actactacaataatggtaattagtaacacttaaaaattgtaac----taaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgtta 15361790  T
Q  327 ggtaaa 332  Q
    ||||||    
T  15361791 ggtaaa 15361796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 227 - 349
Target Start/End: Original strand, 6684074 - 6684191
Alignment:
Q  227 actactacaataatgacatttaataatacttgaaaattgtaactaactaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgtta 326  Q
    ||||||||||||||| |||||| ||| |||| |||||||||||| |    ||||||||||||||| ||||||||||||||||||||| |||| |||||||    
T  6684074 actactacaataatggcatttagtaacacttaaaaattgtaactta----atcaagaaaaatgttactaattaaatttagtaacactcgaac-attgtta 6684168  T
Q  327 ggtaaaatctgtgctactaaaga 349  Q
    |||||| ||  || |||||||||    
T  6684169 ggtaaagtccatgttactaaaga 6684191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 272 - 349
Target Start/End: Complemental strand, 23264575 - 23264498
Alignment:
Q  272 actaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgttaggtaaaatctgtgctactaaaga 349  Q
    ||||||||||||||| |||| ||||||||||||||||||| | ||||||||||||||||||||| ||| |||||||||    
T  23264575 actaaatcaagaaaattgttactaattaaatttagtaacattcgaacaattgttaggtaaaatccgtgttactaaaga 23264498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 270 - 332
Target Start/End: Complemental strand, 11948828 - 11948766
Alignment:
Q  270 taactaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgttaggtaaa 332  Q
    |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||    
T  11948828 taactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaa 11948766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 230 - 332
Target Start/End: Original strand, 15690421 - 15690519
Alignment:
Q  230 actacaataatgacatttaataatacttgaaaattgtaactaactaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgttaggt 329  Q
    |||||||||| |||||||| ||| | ||||||||||||||    |||||||||||||||||| ||||||||||||||| |||||  |||||||||||| |    
T  15690421 actacaataaagacatttagtaacatttgaaaattgtaac----taaatcaagaaaaatgttactaattaaatttagtgacactcaaacaattgttagct 15690516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 256 - 332
Target Start/End: Complemental strand, 29668008 - 29667934
Alignment:
Q  256 ttgaaaattgtaactaactaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgttaggtaaa 332  Q
    |||||||||||||| || | ||  |||||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  29668008 ttgaaaattgtaacgaaatcaa--aagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaa 29667934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 274 - 349
Target Start/End: Original strand, 34374848 - 34374925
Alignment:
Q  274 taaatcaagaaaaatgttgctaattaaatttagtaacacttgaac--aattgttaggtaaaatctgtgctactaaaga 349  Q
    |||||||||||||||||| ||||||| |||| |||||| ||||||  |||||||||| |||||||||| |||||||||    
T  34374848 taaatcaagaaaaatgttactaattatattttgtaacatttgaacaaaattgttaggcaaaatctgtgttactaaaga 34374925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 132 - 173
Target Start/End: Original strand, 4791913 - 4791954
Alignment:
Q  132 acgaaattctagcccgtgcttggcacgggtttccaagctagt 173  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  4791913 acgaaattctagcccgtgcttggcacgggtttccaagctagt 4791954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 272 - 320
Target Start/End: Complemental strand, 30481307 - 30481259
Alignment:
Q  272 actaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaa 320  Q
    ||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  30481307 actaaatcaagaaaaatgttgctaattaaatctagtaacaattgaacaa 30481259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 271 - 332
Target Start/End: Complemental strand, 4485645 - 4485584
Alignment:
Q  271 aactaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgttaggtaaa 332  Q
    |||||||||||| |||||| | ||||||||||||||||| | ||||| ||||||||||||||    
T  4485645 aactaaatcaaggaaaatggtactaattaaatttagtaatatttgaataattgttaggtaaa 4485584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 272 - 333
Target Start/End: Complemental strand, 10935860 - 10935799
Alignment:
Q  272 actaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgttaggtaaaa 333  Q
    ||||||||| |||||||||| ||||||| ||  ||||||| |||||||||||||||||||||    
T  10935860 actaaatcatgaaaaatgttactaattatatccagtaacatttgaacaattgttaggtaaaa 10935799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 272 - 328
Target Start/End: Complemental strand, 9631234 - 9631178
Alignment:
Q  272 actaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgttagg 328  Q
    ||||||||||||| || ||| |||| |||||||||||||| ||||||||||||||||    
T  9631234 actaaatcaagaagaacgttactaagtaaatttagtaacatttgaacaattgttagg 9631178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 138 - 174
Target Start/End: Original strand, 21058867 - 21058903
Alignment:
Q  138 ttctagcccgtgcttggcacgggtttccaagctagtt 174  Q
    |||||||||||||||||||||||||||||||||||||    
T  21058867 ttctagcccgtgcttggcacgggtttccaagctagtt 21058903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 272 - 332
Target Start/End: Complemental strand, 23904431 - 23904371
Alignment:
Q  272 actaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgttaggtaaa 332  Q
    ||||||| |||||||| ||| |||| | |||||||||||| ||||||||||||||||||||    
T  23904431 actaaatgaagaaaaaagttactaaatcaatttagtaacatttgaacaattgttaggtaaa 23904371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 174
Target Start/End: Complemental strand, 4848887 - 4848849
Alignment:
Q  136 aattctagcccgtgcttggcacgggtttccaagctagtt 174  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  4848887 aattctagctcgtgcttggcacgggtttccaagctagtt 4848849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 173
Target Start/End: Original strand, 33350571 - 33350621
Alignment:
Q  123 ttaaatatcacgaaattctagcccgtgcttggcacgggtttccaagctagt 173  Q
    |||||| | |||||| |||||||||||||||||||||||||||| ||||||    
T  33350571 ttaaatttgacgaaagtctagcccgtgcttggcacgggtttccatgctagt 33350621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 270 - 347
Target Start/End: Original strand, 10070674 - 10070751
Alignment:
Q  270 taactaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgttaggtaaaatctgtgctactaaa 347  Q
    |||||||||||| |||| |||| ||||||||||||| |||||||  || |||||||| ||||| || ||| |||||||    
T  10070674 taactaaatcaacaaaattgttactaattaaatttaataacactcaaataattgttacgtaaagtccgtgttactaaa 10070751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 136 - 173
Target Start/End: Complemental strand, 29964799 - 29964762
Alignment:
Q  136 aattctagcccgtgcttggcacgggtttccaagctagt 173  Q
    |||||||||||||||||||||||||||||||| |||||    
T  29964799 aattctagcccgtgcttggcacgggtttccaaactagt 29964762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 174
Target Start/End: Complemental strand, 15872623 - 15872587
Alignment:
Q  138 ttctagcccgtgcttggcacgggtttccaagctagtt 174  Q
    ||||||||||||||||||| |||||||||||||||||    
T  15872623 ttctagcccgtgcttggcatgggtttccaagctagtt 15872587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 270 - 333
Target Start/End: Original strand, 1942588 - 1942651
Alignment:
Q  270 taactaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgttaggtaaaa 333  Q
    ||||||||||||||||||| || || || ||||||| ||||| |||| |||||| |||||||||    
T  1942588 taactaaatcaagaaaaatattactgataaaatttaataacatttgagcaattgctaggtaaaa 1942651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 136 - 175
Target Start/End: Original strand, 15683412 - 15683451
Alignment:
Q  136 aattctagcccgtgcttggcacgggtttccaagctagttg 175  Q
    ||||||||| |||||||||||||||||||||| |||||||    
T  15683412 aattctagctcgtgcttggcacgggtttccaacctagttg 15683451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 174
Target Start/End: Complemental strand, 28365493 - 28365451
Alignment:
Q  132 acgaaattctagcccgtgcttggcacgggtttccaagctagtt 174  Q
    |||| ||||||||||||||||||||||||| |||| |||||||    
T  28365493 acgacattctagcccgtgcttggcacgggtgtccatgctagtt 28365451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 23410238 - 23410279
Alignment:
Q  11 gctatgataccattgttgggccttacgagggaaccaacactg 52  Q
    |||||||||| ||||||||||||||| ||||| |||||||||    
T  23410238 gctatgatactattgttgggccttacaagggagccaacactg 23410279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 114; Significance: 1e-57; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 13 - 174
Target Start/End: Complemental strand, 29912511 - 29912350
Alignment:
Q  13 tatgataccattgttgggccttacgagggaaccaacactggcatggattgacccattgtacagagaacaaccagacaaatgaaaatgatatcaaatcttt 112  Q
    |||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||| ||||||||||||| ||||||||| |||||||||||||||||    
T  29912511 tatgataccattgttgggccttacaagggagccaacactggcatgaattgacccattgcacagagaacaaccggacaaatgagaatgatatcaaatcttt 29912412  T
Q  113 aattactattttaaatatcacgaaattctagcccgtgcttggcacgggtttccaagctagtt 174  Q
    | ||| |||||||||||||||||||||||||| ||||||||||||  ||||| |||||||||    
T  29912411 acttaatattttaaatatcacgaaattctagctcgtgcttggcacaagtttctaagctagtt 29912350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 227 - 349
Target Start/End: Complemental strand, 26225098 - 26224980
Alignment:
Q  227 actactacaataatgacatttaataatacttgaaaattgtaactaactaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgtta 326  Q
    |||||||||||||||||||||||||| |||||||||||||||||||    ||||||||||||| | |||||||||||||||||||||||||||||| |||    
T  26225098 actactacaataatgacatttaataacacttgaaaattgtaactaa----atcaagaaaaatgatactaattaaatttagtaacacttgaacaattatta 26225003  T
Q  327 ggtaaaatctgtgctactaaaga 349  Q
    ||||||  | ||| |||||||||    
T  26225002 ggtaaagccggtgttactaaaga 26224980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 227 - 349
Target Start/End: Complemental strand, 9242604 - 9242486
Alignment:
Q  227 actactacaataatgacatttaataatacttgaaaattgtaactaactaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgtta 326  Q
    ||||||||||||||||||||||  || |||||||||||||||||||    |||||||||| |||| |||||||||||| |||||||||||||||||||||    
T  9242604 actactacaataatgacatttagcaacacttgaaaattgtaactaa----atcaagaaaattgttactaattaaattttgtaacacttgaacaattgtta 9242509  T
Q  327 ggtaaaatctgtgctactaaaga 349  Q
    | |||| ||  || |||||||||    
T  9242508 gataaagtccatgttactaaaga 9242486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 227 - 332
Target Start/End: Complemental strand, 4685523 - 4685422
Alignment:
Q  227 actactacaataatgacatttaataatacttgaaaattgtaactaactaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgtta 326  Q
    ||||||||||||||| || ||| ||| |||||||||||||||||||    |||||||||||||||  ||||||||||||| |||||||||||||||||||    
T  4685523 actactacaataatggcaattagtaacacttgaaaattgtaactaa----atcaagaaaaatgttagtaattaaatttagcaacacttgaacaattgtta 4685428  T
Q  327 ggtaaa 332  Q
    ||||||    
T  4685427 ggtaaa 4685422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 227 - 332
Target Start/End: Complemental strand, 26205535 - 26205434
Alignment:
Q  227 actactacaataatgacatttaataatacttgaaaattgtaactaactaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgtta 326  Q
    |||||||||||||||||||||| | | |||||||||||     |||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||    
T  26205535 actactacaataatgacatttagtgacacttgaaaatt----ataactaaatcaagaaaaatgttactaattaaatttagtaacacttgaaaaattggta 26205440  T
Q  327 ggtaaa 332  Q
    ||||||    
T  26205439 ggtaaa 26205434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 227 - 335
Target Start/End: Original strand, 16170251 - 16170355
Alignment:
Q  227 actactacaataatgacatttaataatacttgaaaattgtaactaactaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgtta 326  Q
    |||||| |||||||||||||||  || |||||||||||||||| ||    ||||  |||| |||| |||||||||||||||||||||| |||||||||||    
T  16170251 actactgcaataatgacatttagcaacacttgaaaattgtaaccaa----atcacaaaaagtgttactaattaaatttagtaacacttaaacaattgtta 16170346  T
Q  327 ggtaaaatc 335  Q
    |||||||||    
T  16170347 ggtaaaatc 16170355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 235 - 332
Target Start/End: Original strand, 10022112 - 10022205
Alignment:
Q  235 aataatgacatttaataatacttgaaaattgtaactaactaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgttaggtaaa 332  Q
    |||||||||||||| ||| | ||||||||||||||    |||||||  ||||||||| |||||||| ||||||||||| |||||||||||||||||||    
T  10022112 aataatgacatttagtaacaattgaaaattgtaac----taaatcagaaaaaatgttactaattaagtttagtaacacatgaacaattgttaggtaaa 10022205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 275 - 332
Target Start/End: Complemental strand, 26608615 - 26608558
Alignment:
Q  275 aaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgttaggtaaa 332  Q
    ||||||||||||||||| || |||||||||||||||| ||||||||||||||| ||||    
T  26608615 aaatcaagaaaaatgttactgattaaatttagtaacatttgaacaattgttagataaa 26608558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 272 - 328
Target Start/End: Original strand, 30089756 - 30089812
Alignment:
Q  272 actaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgttagg 328  Q
    |||||||||||||||||||| || |||| ||||||||||| ||||||||||||||||    
T  30089756 actaaatcaagaaaaatgttactgattatatttagtaacatttgaacaattgttagg 30089812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 270 - 332
Target Start/End: Complemental strand, 20277441 - 20277379
Alignment:
Q  270 taactaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgttaggtaaa 332  Q
    |||||||||||| |||||| ||  |||||||||||||||||| || |||||||||||||||||    
T  20277441 taactaaatcaaaaaaaatattattaattaaatttagtaacatttaaacaattgttaggtaaa 20277379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 272 - 350
Target Start/End: Complemental strand, 26619182 - 26619105
Alignment:
Q  272 actaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgttaggtaaaatctgtgctactaaagaa 350  Q
    |||||||||||||||||||| || |||||||||| ||||| ||||||||||| ||||||||  || || ||||||||||    
T  26619182 actaaatcaagaaaaatgttactgattaaatttattaacatttgaacaattg-taggtaaatcctatgttactaaagaa 26619105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 136 - 174
Target Start/End: Original strand, 33940474 - 33940512
Alignment:
Q  136 aattctagcccgtgcttggcacgggtttccaagctagtt 174  Q
    |||||||||||||||||||||||||||||||||||||||    
T  33940474 aattctagcccgtgcttggcacgggtttccaagctagtt 33940512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 173
Target Start/End: Original strand, 18294101 - 18294138
Alignment:
Q  136 aattctagcccgtgcttggcacgggtttccaagctagt 173  Q
    ||||||||||||||||||||||||||||||||||||||    
T  18294101 aattctagcccgtgcttggcacgggtttccaagctagt 18294138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 272 - 333
Target Start/End: Complemental strand, 26621170 - 26621109
Alignment:
Q  272 actaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgttaggtaaaa 333  Q
    ||||||| |||||||||||| || ||||||||||| |||| || |||||||||||| |||||    
T  26621170 actaaattaagaaaaatgttactgattaaatttagcaacatttaaacaattgttagataaaa 26621109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 135 - 174
Target Start/End: Original strand, 17475019 - 17475058
Alignment:
Q  135 aaattctagcccgtgcttggcacgggtttccaagctagtt 174  Q
    ||||||||||||||||||||||||||| |||| |||||||    
T  17475019 aaattctagcccgtgcttggcacgggtgtccatgctagtt 17475058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 135 - 174
Target Start/End: Complemental strand, 17578195 - 17578156
Alignment:
Q  135 aaattctagcccgtgcttggcacgggtttccaagctagtt 174  Q
    ||||||||||||||||||||||||||| |||| |||||||    
T  17578195 aaattctagcccgtgcttggcacgggtgtccatgctagtt 17578156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 123 - 166
Target Start/End: Original strand, 29502506 - 29502549
Alignment:
Q  123 ttaaatatcacgaaattctagcccgtgcttggcacgggtttcca 166  Q
    |||| ||| |||||||||||||||||||||||||||||| ||||    
T  29502506 ttaagtatgacgaaattctagcccgtgcttggcacgggtgtcca 29502549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 332
Target Start/End: Original strand, 16086510 - 16086568
Alignment:
Q  274 taaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgttaggtaaa 332  Q
    |||||||  |||| |||| ||||||||||||| ||||| ||||| ||||||||||||||    
T  16086510 taaatcagaaaaactgttactaattaaatttaataacatttgaataattgttaggtaaa 16086568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 324
Target Start/End: Original strand, 3374325 - 3374374
Alignment:
Q  275 aaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgt 324  Q
    |||||||||||||||||  | |||||||| ||||||| ||||||||||||    
T  3374325 aaatcaagaaaaatgttattgattaaattaagtaacatttgaacaattgt 3374374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 9e-43; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 77 - 173
Target Start/End: Original strand, 4774913 - 4775009
Alignment:
Q  77 gaacaaccagacaaatgaaaatgatatcaaatctttaattactattttaaatatcacgaaattctagcccgtgcttggcacgggtttccaagctagt 173  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  4774913 gaacaaccagacaaatgaaaatgatatcaaatctttaattaatattttaaatatcacgaaattctagcccgtgcttggcacgggtttccaagttagt 4775009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 227 - 332
Target Start/End: Original strand, 30266983 - 30267084
Alignment:
Q  227 actactacaataatgacatttaataatacttgaaaattgtaactaactaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgtta 326  Q
    |||||||||||||||||||||| ||| ||||||||||||||||    ||||||||||||||||||  ||||||||||||||||||| |||||||||||||    
T  30266983 actactacaataatgacatttagtaacacttgaaaattgtaac----taaatcaagaaaaatgttagtaattaaatttagtaacacctgaacaattgtta 30267078  T
Q  327 ggtaaa 332  Q
    ||||||    
T  30267079 ggtaaa 30267084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 228 - 332
Target Start/End: Original strand, 44920939 - 44921038
Alignment:
Q  228 ctactacaataatgacatttaataatacttgaaaattgtaactaactaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgttag 327  Q
    ||||||||||||||||||||| ||| |||||||||||||||||||    ||||| ||||||||| |||||||||||||||||||| | ||||||||||||    
T  44920939 ctactacaataatgacatttagtaacacttgaaaattgtaactaa----atcaa-aaaaatgttactaattaaatttagtaacacctaaacaattgttag 44921033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 242 - 349
Target Start/End: Original strand, 7718180 - 7718283
Alignment:
Q  242 acatttaataatacttgaaaattgtaactaactaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgttaggtaaaatctgtgct 341  Q
    ||||||| ||||||||||||||||||||    ||||||||||||||| || |||||||||||||||||||| |||||||||||||| |||| || ||| |    
T  7718180 acatttagtaatacttgaaaattgtaac----taaatcaagaaaaatattactaattaaatttagtaacacatgaacaattgttagataaagtccgtgtt 7718275  T
Q  342 actaaaga 349  Q
    ||||||||    
T  7718276 actaaaga 7718283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 237 - 332
Target Start/End: Complemental strand, 31342826 - 31342735
Alignment:
Q  237 taatgacatttaataatacttgaaaattgtaactaactaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgttaggtaaa 332  Q
    ||||| || ||| ||| |||||||||||||||    ||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||    
T  31342826 taatggcaattagtaacacttgaaaattgtaa----ctaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaa 31342735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 270 - 332
Target Start/End: Original strand, 41573412 - 41573474
Alignment:
Q  270 taactaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgttaggtaaa 332  Q
    |||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||    
T  41573412 taactaaatcaagaaaaatgttactaattaaatttagtaacagttaaacaattgttaggtaaa 41573474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 274 - 332
Target Start/End: Original strand, 15513690 - 15513748
Alignment:
Q  274 taaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgttaggtaaa 332  Q
    |||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||    
T  15513690 taaatcaagaaaaatgttactagttaaattttgtaacacttgaacaattgttaggtaaa 15513748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 272 - 347
Target Start/End: Original strand, 11017478 - 11017553
Alignment:
Q  272 actaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgttaggtaaaatctgtgctactaaa 347  Q
    ||||||| ||||||| |||| ||||||||||||||||||| |||| ||||||||||||||| || ||| |||||||    
T  11017478 actaaataaagaaaattgttactaattaaatttagtaacatttgaccaattgttaggtaaagtccgtgttactaaa 11017553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 272 - 332
Target Start/End: Original strand, 24479173 - 24479233
Alignment:
Q  272 actaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgttaggtaaa 332  Q
    |||||||||||| || |||| ||||||||||||||||||| |||||||||| |||||||||    
T  24479173 actaaatcaagataactgttactaattaaatttagtaacatttgaacaattcttaggtaaa 24479233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 274 - 332
Target Start/End: Original strand, 40016614 - 40016672
Alignment:
Q  274 taaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgttaggtaaa 332  Q
    ||||||||| |||||||| || |||||||||||||||| ||||| ||||||||||||||    
T  40016614 taaatcaagtaaaatgttactgattaaatttagtaacatttgaataattgttaggtaaa 40016672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 119 - 166
Target Start/End: Original strand, 29978111 - 29978158
Alignment:
Q  119 tattttaaatatcacgaaattctagcccgtgcttggcacgggtttcca 166  Q
    |||||||| |||||||||||||||||||||| ||||||||||| ||||    
T  29978111 tattttaagtatcacgaaattctagcccgtgtttggcacgggtgtcca 29978158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 136 - 173
Target Start/End: Complemental strand, 27203064 - 27203027
Alignment:
Q  136 aattctagcccgtgcttggcacgggtttccaagctagt 173  Q
    |||||||||||||||||||||||| |||||||||||||    
T  27203064 aattctagcccgtgcttggcacggatttccaagctagt 27203027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 136 - 173
Target Start/End: Complemental strand, 27858211 - 27858174
Alignment:
Q  136 aattctagcccgtgcttggcacgggtttccaagctagt 173  Q
    |||||||||||||||||||||||| |||||||||||||    
T  27858211 aattctagcccgtgcttggcacggatttccaagctagt 27858174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 132 - 173
Target Start/End: Original strand, 41754759 - 41754800
Alignment:
Q  132 acgaaattctagcccgtgcttggcacgggtttccaagctagt 173  Q
    |||||||||||||||||||||||||||||| |||| ||||||    
T  41754759 acgaaattctagcccgtgcttggcacgggtgtccatgctagt 41754800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 332
Target Start/End: Original strand, 7702450 - 7702510
Alignment:
Q  272 actaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgttaggtaaa 332  Q
    ||||||| || |||||||||  |||||||| ||||||||| ||| ||||||||||||||||    
T  7702450 actaaattaaaaaaaatgttattaattaaaattagtaacatttgtacaattgttaggtaaa 7702510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 324
Target Start/End: Complemental strand, 27151311 - 27151259
Alignment:
Q  272 actaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgt 324  Q
    |||||||||||||||||||  ||||||||| ||||| ||||||| ||||||||    
T  27151311 actaaatcaagaaaaatgtcactaattaaaattagtgacacttgtacaattgt 27151259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 174
Target Start/End: Complemental strand, 45658187 - 45658147
Alignment:
Q  134 gaaattctagcccgtgcttggcacgggtttccaagctagtt 174  Q
    ||||||||||||||||||| ||||||||||||| |||||||    
T  45658187 gaaattctagcccgtgcttagcacgggtttccatgctagtt 45658147  T

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Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 134 - 173
Target Start/End: Original strand, 2593329 - 2593368
Alignment:
Q  134 gaaattctagcccgtgcttggcacgggtttccaagctagt 173  Q
    |||||||||||||||||||||||||||| ||||| |||||    
T  2593329 gaaattctagcccgtgcttggcacgggtgtccaaactagt 2593368  T

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Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 174
Target Start/End: Original strand, 3573036 - 3573074
Alignment:
Q  136 aattctagcccgtgcttggcacgggtttccaagctagtt 174  Q
    ||||| |||||||||||||||||||||||||| ||||||    
T  3573036 aattcaagcccgtgcttggcacgggtttccaaactagtt 3573074  T

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Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 163
Target Start/End: Complemental strand, 24967761 - 24967721
Alignment:
Q  123 ttaaatatcacgaaattctagcccgtgcttggcacgggttt 163  Q
    |||||| | |||||| |||||||||||||||||||||||||    
T  24967761 ttaaatttgacgaaagtctagcccgtgcttggcacgggttt 24967721  T

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Target: scaffold0069 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 227 - 349
Target Start/End: Complemental strand, 40818 - 40700
Alignment:
Q  227 actactacaataatgacatttaataatacttgaaaattgtaactaactaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgtta 326  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||    |||||||||| |||| |||||||||||| | |||||| ||||||||||||    
T  40818 actactacaataatgacatttagcaatacttgaaaattgtaactaa----atcaagaaaattgttactaattaaattttgcaacactcgaacaattgtta 40723  T
Q  327 ggtaaaatctgtgctactaaaga 349  Q
    | |||| ||  || |||||||||    
T  40722 gataaagtccatgttactaaaga 40700  T

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Target: scaffold0576 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 227 - 332
Target Start/End: Original strand, 6679 - 6780
Alignment:
Q  227 actactacaataatgacatttaataatacttgaaaattgtaactaactaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgtta 326  Q
    |||||||||||||||  | ||| ||| |||| |||||||||||    |||||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  6679 actactacaataatggtaattagtaacacttaaaaattgtaac----taaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgtta 6774  T
Q  327 ggtaaa 332  Q
    ||||||    
T  6775 ggtaaa 6780  T

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Target: scaffold0684 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: scaffold0684
Description:

Target: scaffold0684; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 227 - 349
Target Start/End: Complemental strand, 867 - 749
Alignment:
Q  227 actactacaataatgacatttaataatacttgaaaattgtaactaactaaatcaagaaaaatgttgctaattaaatttagtaacacttgaacaattgtta 326  Q
    ||||||||||||||||||||||  || |||||||||||||||||||    |||||||||| |||| |||||||||||| | |||||| ||||||||||||    
T  867 actactacaataatgacatttagcaacacttgaaaattgtaactaa----atcaagaaaattgttactaattaaattttgcaacactcgaacaattgtta 772  T
Q  327 ggtaaaatctgtgctactaaaga 349  Q
    | |||| ||  || |||||||||    
T  771 gataaagtccatgttactaaaga 749  T

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Target: scaffold0284 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0284
Description:

Target: scaffold0284; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 166
Target Start/End: Original strand, 3045 - 3079
Alignment:
Q  132 acgaaattctagcccgtgcttggcacgggtttcca 166  Q
    |||||||||||||||||||||||||||||| ||||    
T  3045 acgaaattctagcccgtgcttggcacgggtgtcca 3079  T

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Target: scaffold0029 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 123 - 173
Target Start/End: Original strand, 15683 - 15733
Alignment:
Q  123 ttaaatatcacgaaattctagcccgtgcttggcacgggtttccaagctagt 173  Q
    |||||| | |||||| |||||||||||||||||| ||||||||| ||||||    
T  15683 ttaaatttgacgaaagtctagcccgtgcttggcatgggtttccatgctagt 15733  T

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Target: scaffold0229 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 169
Target Start/End: Complemental strand, 24649 - 24616
Alignment:
Q  136 aattctagcccgtgcttggcacgggtttccaagc 169  Q
    ||||||||||||||||||||||| ||||||||||    
T  24649 aattctagcccgtgcttggcacgagtttccaagc 24616  T

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Target: scaffold0131 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 125 - 161
Target Start/End: Complemental strand, 17365 - 17329
Alignment:
Q  125 aaatatcacgaaattctagcccgtgcttggcacgggt 161  Q
    |||||| |||||||||||||||||| |||||||||||    
T  17365 aaatatgacgaaattctagcccgtgtttggcacgggt 17329  T

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